Wall clock time and date at job start Tue Mar 31 2020 11:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50696 * 120.00081 * 2 1 4 4 N 1.46503 * 109.46848 * 234.78613 * 3 2 1 5 5 C 1.36736 * 127.13753 * 89.29914 * 4 3 2 6 6 C 1.50699 * 126.34899 * 359.95888 * 5 4 3 7 7 H 1.09001 * 109.46891 * 0.02562 * 6 5 4 8 8 C 1.52993 * 109.47528 * 240.00348 * 6 5 4 9 9 C 1.53008 * 109.46778 * 120.00164 * 6 5 4 10 10 C 1.50698 * 109.46675 * 185.00345 * 9 6 5 11 11 H 1.08001 * 120.00622 * 359.97438 * 10 9 6 12 12 C 1.37880 * 119.99938 * 180.02562 * 10 9 6 13 13 N 1.31526 * 119.99797 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00397 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46978 * 89.99689 * 14 12 10 16 16 H 1.48497 * 109.47459 * 209.99520 * 14 12 10 17 17 H 1.48499 * 109.47098 * 329.99988 * 14 12 10 18 18 N 1.30304 * 107.30365 * 179.83309 * 5 4 3 19 19 N 1.28523 * 110.05297 * 0.44423 * 18 5 4 20 20 C 1.31216 * 109.86185 * 359.71638 * 19 18 5 21 21 N 1.38584 * 126.47717 * 179.97438 * 20 19 18 22 22 C 1.47246 * 110.99628 * 350.31818 * 21 20 19 23 23 C 1.53084 * 108.47175 * 54.58265 * 22 21 20 24 24 C 1.50306 * 109.72142 * 48.96157 * 23 22 21 25 25 C 1.29825 * 122.89106 * 343.48206 * 24 23 22 26 26 C 1.50699 * 118.35635 * 180.36865 * 25 24 23 27 27 C 1.46844 * 110.99930 * 113.24457 * 21 20 19 28 28 H 1.08003 * 119.99461 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00274 * 179.72681 * 1 2 3 30 30 H 1.08001 * 119.99792 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47241 * 354.77946 * 3 2 1 32 32 H 1.08996 * 109.47338 * 114.78611 * 3 2 1 33 33 H 1.09002 * 109.47301 * 180.02562 * 8 6 5 34 34 H 1.08998 * 109.47042 * 300.00248 * 8 6 5 35 35 H 1.08998 * 109.47404 * 59.99626 * 8 6 5 36 36 H 1.08993 * 109.47275 * 305.00004 * 9 6 5 37 37 H 1.09000 * 109.46879 * 65.00654 * 9 6 5 38 38 H 0.96996 * 119.99843 * 180.02562 * 13 12 10 39 39 H 1.08997 * 109.63640 * 174.27510 * 22 21 20 40 40 H 1.08994 * 109.63320 * 294.68090 * 22 21 20 41 41 H 1.09004 * 109.43079 * 169.04157 * 23 22 21 42 42 H 1.09004 * 109.43082 * 288.88554 * 23 22 21 43 43 H 1.08001 * 118.55290 * 163.49983 * 24 23 22 44 44 H 1.08997 * 109.47358 * 0.02562 * 26 25 24 45 45 H 1.09004 * 109.46788 * 120.00492 * 26 25 24 46 46 H 1.09001 * 109.47289 * 239.99849 * 26 25 24 47 47 H 1.08996 * 109.33977 * 47.78912 * 27 21 20 48 48 H 1.08999 * 109.33866 * 167.29423 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9975 1.3297 -1.1285 5 6 2.7485 1.7766 -2.3965 6 6 1.4475 2.3427 -2.9047 7 1 0.7136 2.3466 -2.0988 8 6 0.9330 1.4812 -4.0596 9 6 1.6718 3.7741 -3.3966 10 6 0.3505 4.3827 -3.7900 11 1 -0.5582 3.8062 -3.6989 12 6 0.3019 5.6753 -4.2675 13 7 1.4086 6.3772 -4.3791 14 14 -1.3357 6.4296 -4.7559 15 1 -1.9399 7.1053 -3.5796 16 1 -1.1203 7.4215 -5.8398 17 1 -2.2489 5.3617 -5.2364 18 7 3.8453 1.6249 -3.0834 19 7 4.7604 1.1078 -2.3437 20 6 4.2945 0.9058 -1.1338 21 7 4.9884 0.3638 -0.0636 22 6 6.2831 -0.1865 -0.4985 23 6 7.0544 0.9121 -1.2345 24 6 7.0458 2.1730 -0.4164 25 6 6.2188 2.3714 0.5645 26 6 6.2946 3.6780 1.3114 27 6 5.1914 1.3637 0.9926 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9353 0.0004 31 1 1.3590 2.1314 -0.0935 32 1 2.6183 1.4043 0.9329 33 1 -0.0078 1.8910 -4.4274 34 1 1.6670 1.4777 -4.8653 35 1 0.7733 0.4615 -3.7092 36 1 2.1214 4.3660 -2.5994 37 1 2.3375 3.7615 -4.2596 38 1 1.3743 7.2866 -4.7146 39 1 6.8526 -0.5140 0.3712 40 1 6.1161 -1.0314 -1.1664 41 1 8.0835 0.5892 -1.3922 42 1 6.5831 1.1023 -2.1988 43 1 7.7589 2.9482 -0.6553 44 1 7.0843 4.2957 0.8838 45 1 5.3409 4.1995 1.2289 46 1 6.5129 3.4841 2.3616 47 1 4.2488 1.8727 1.1936 48 1 5.5306 0.8655 1.9008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121600908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:10 Heat of formation + Delta-G solvation = 125.496004 kcal Electronic energy + Delta-G solvation = -27694.905143 eV Core-core repulsion = 24173.438751 eV Total energy + Delta-G solvation = -3521.466392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.70934 -39.51358 -36.17732 -35.20407 -34.05650 -32.76348 -32.18264 -31.37405 -28.85478 -27.13498 -26.84711 -26.73551 -24.83351 -24.02750 -22.87562 -21.87724 -21.02951 -19.97841 -19.05257 -18.27269 -16.83466 -16.46008 -16.06622 -15.98984 -15.00040 -14.83904 -14.66840 -14.42907 -14.31565 -13.92135 -13.71675 -13.56016 -13.18729 -12.72494 -12.69626 -12.50443 -12.30688 -12.10634 -11.94831 -11.85589 -11.69944 -11.59258 -11.16234 -10.98747 -10.93779 -10.75792 -10.51154 -10.45567 -10.15099 -9.98329 -9.82829 -9.69961 -9.51155 -9.17609 -9.09834 -8.63015 -8.36344 -7.90815 -6.00129 -4.03702 1.88473 2.11919 2.21715 2.73551 3.30601 3.33476 3.38000 3.40502 3.82257 4.43901 4.58408 4.67560 4.70760 4.74587 4.81202 4.95511 5.07337 5.12249 5.26809 5.31816 5.35323 5.40224 5.42791 5.47954 5.55430 5.59064 5.69899 5.74518 5.76267 5.87153 5.93351 6.08494 6.12967 6.24254 6.27750 6.38054 6.41150 6.52044 6.61320 6.66818 6.74491 6.86502 6.91682 7.00364 7.13560 7.49843 7.63156 7.80102 7.99639 8.35667 9.02046 9.27837 9.59823 11.10925 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013741 B = 0.004129 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.166365 B = 6779.589969 C = 7553.544007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.175 4.175 3 C 0.136 3.864 4 N -0.475 5.475 5 C 0.219 3.781 6 C 0.000 4.000 7 H 0.070 0.930 8 C -0.124 4.124 9 C 0.039 3.961 10 C -0.520 4.520 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.891 3.109 15 H -0.282 1.282 16 H -0.286 1.286 17 H -0.273 1.273 18 N -0.289 5.289 19 N -0.317 5.317 20 C 0.338 3.662 21 N -0.446 5.446 22 C 0.073 3.927 23 C -0.152 4.152 24 C -0.125 4.125 25 C -0.186 4.186 26 C -0.111 4.111 27 C 0.091 3.909 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.012 0.988 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.138 0.862 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.002 -12.739 14.197 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.194 4.194 3 C 0.014 3.986 4 N -0.169 5.169 5 C -0.049 4.049 6 C -0.021 4.021 7 H 0.088 0.912 8 C -0.182 4.182 9 C 0.001 3.999 10 C -0.558 4.558 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.719 3.281 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.126 5.126 19 N -0.160 5.160 20 C -0.018 4.018 21 N -0.168 5.168 22 C -0.054 4.054 23 C -0.190 4.190 24 C -0.144 4.144 25 C -0.188 4.188 26 C -0.169 4.169 27 C -0.036 4.036 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.030 0.970 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.155 0.845 43 H 0.124 0.876 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.759 -12.941 13.187 19.673 hybrid contribution -1.170 1.158 0.742 1.806 sum 5.588 -11.783 13.929 19.081 Atomic orbital electron populations 1.23983 0.95550 1.02647 0.97743 1.23032 0.96169 0.97932 1.02231 1.20972 0.92005 0.97668 0.87997 1.46233 1.09912 1.49135 1.11623 1.25520 0.99922 0.99346 0.80073 1.19949 0.85959 0.98721 0.97467 0.91221 1.21652 1.02330 0.96552 0.97693 1.19099 0.97615 0.86308 0.96887 1.21144 0.93055 0.98162 1.43436 0.92364 1.24999 0.96227 0.97268 0.95724 1.69988 1.26620 1.10199 1.46137 0.86619 0.84128 0.79174 0.78226 1.20780 1.21225 1.19772 1.74009 0.97215 1.16185 1.25143 1.74319 1.22442 1.19023 1.00226 1.22384 0.84091 1.01421 0.93913 1.59553 1.20259 1.30321 1.06661 1.22140 0.86085 0.97296 0.99871 1.21702 1.01245 0.92943 1.03152 1.22140 0.98266 0.98769 0.95199 1.21433 0.99466 0.97829 1.00050 1.20805 1.02347 0.94226 0.99491 1.21126 0.98044 0.90555 0.93854 0.87789 0.87800 0.86705 0.87998 0.88363 0.90778 0.92142 0.94966 0.96960 0.95006 0.92955 0.89912 0.89561 0.90890 0.84486 0.87645 0.92081 0.91904 0.91965 0.90036 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 14.32 29.01 0.42 -1.20 16 2 C -0.17 -1.97 9.85 -36.03 -0.35 -2.33 16 3 C 0.14 1.73 6.11 -5.19 -0.03 1.70 16 4 N -0.47 -7.90 2.79 -115.36 -0.32 -8.23 16 5 C 0.22 4.39 6.58 -154.01 -1.01 3.38 16 6 C 0.00 0.00 2.70 -91.77 -0.25 -0.24 16 7 H 0.07 1.33 6.96 -51.93 -0.36 0.97 16 8 C -0.12 -2.39 8.99 37.15 0.33 -2.06 16 9 C 0.04 1.00 4.43 -27.88 -0.12 0.88 16 10 C -0.52 -14.08 8.41 -34.44 -0.29 -14.37 16 11 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 12 C 0.06 1.67 5.46 -17.81 -0.10 1.58 16 13 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 14 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 N -0.29 -6.33 12.18 32.99 0.40 -5.93 16 19 N -0.32 -6.16 8.35 30.32 0.25 -5.91 16 20 C 0.34 5.61 6.20 -318.86 -1.98 3.64 16 21 N -0.45 -5.83 5.07 -175.92 -0.89 -6.72 16 22 C 0.07 0.85 5.86 -3.59 -0.02 0.83 16 23 C -0.15 -1.97 5.53 -28.03 -0.16 -2.12 16 24 C -0.13 -1.66 9.32 -35.89 -0.33 -1.99 16 25 C -0.19 -2.32 5.57 -101.00 -0.56 -2.88 16 26 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 27 C 0.09 1.04 5.45 -5.27 -0.03 1.01 16 28 H 0.10 1.01 7.84 -52.48 -0.41 0.60 16 29 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.10 1.30 6.91 -51.93 -0.36 0.94 16 32 H 0.10 1.05 5.66 -51.93 -0.29 0.75 16 33 H 0.07 1.44 6.95 -51.93 -0.36 1.07 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 39 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.14 2.24 5.10 -51.93 -0.26 1.98 16 43 H 0.11 1.34 7.63 -52.49 -0.40 0.94 16 44 H 0.06 0.66 7.61 -51.93 -0.40 0.26 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.92 5.50 -51.93 -0.29 0.64 16 48 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -32.26 380.31 -10.95 -43.21 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.71 Total: 2.70 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -4.13 Total: -15.04 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.18 Total: -52.75 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.26 -10.95 -43.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121600908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.703 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds