Wall clock time and date at job start Tue Mar 31 2020 11:13:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31007 * 1
3 3 C 1.50696 * 120.00081 * 2 1
4 4 N 1.46503 * 109.46848 * 234.78613 * 3 2 1
5 5 C 1.36736 * 127.13753 * 89.29914 * 4 3 2
6 6 C 1.50699 * 126.34899 * 359.95888 * 5 4 3
7 7 H 1.09001 * 109.46891 * 0.02562 * 6 5 4
8 8 C 1.52993 * 109.47528 * 240.00348 * 6 5 4
9 9 C 1.53008 * 109.46778 * 120.00164 * 6 5 4
10 10 C 1.50698 * 109.46675 * 185.00345 * 9 6 5
11 11 H 1.08001 * 120.00622 * 359.97438 * 10 9 6
12 12 C 1.37880 * 119.99938 * 180.02562 * 10 9 6
13 13 N 1.31526 * 119.99797 * 359.97438 * 12 10 9
14 14 Si 1.86794 * 120.00397 * 179.97438 * 12 10 9
15 15 H 1.48508 * 109.46978 * 89.99689 * 14 12 10
16 16 H 1.48497 * 109.47459 * 209.99520 * 14 12 10
17 17 H 1.48499 * 109.47098 * 329.99988 * 14 12 10
18 18 N 1.30304 * 107.30365 * 179.83309 * 5 4 3
19 19 N 1.28523 * 110.05297 * 0.44423 * 18 5 4
20 20 C 1.31216 * 109.86185 * 359.71638 * 19 18 5
21 21 N 1.38584 * 126.47717 * 179.97438 * 20 19 18
22 22 C 1.47246 * 110.99628 * 350.31818 * 21 20 19
23 23 C 1.53084 * 108.47175 * 54.58265 * 22 21 20
24 24 C 1.50306 * 109.72142 * 48.96157 * 23 22 21
25 25 C 1.29825 * 122.89106 * 343.48206 * 24 23 22
26 26 C 1.50699 * 118.35635 * 180.36865 * 25 24 23
27 27 C 1.46844 * 110.99930 * 113.24457 * 21 20 19
28 28 H 1.08003 * 119.99461 * 359.97438 * 1 2 3
29 29 H 1.07998 * 120.00274 * 179.72681 * 1 2 3
30 30 H 1.08001 * 119.99792 * 179.97438 * 2 1 3
31 31 H 1.09002 * 109.47241 * 354.77946 * 3 2 1
32 32 H 1.08996 * 109.47338 * 114.78611 * 3 2 1
33 33 H 1.09002 * 109.47301 * 180.02562 * 8 6 5
34 34 H 1.08998 * 109.47042 * 300.00248 * 8 6 5
35 35 H 1.08998 * 109.47404 * 59.99626 * 8 6 5
36 36 H 1.08993 * 109.47275 * 305.00004 * 9 6 5
37 37 H 1.09000 * 109.46879 * 65.00654 * 9 6 5
38 38 H 0.96996 * 119.99843 * 180.02562 * 13 12 10
39 39 H 1.08997 * 109.63640 * 174.27510 * 22 21 20
40 40 H 1.08994 * 109.63320 * 294.68090 * 22 21 20
41 41 H 1.09004 * 109.43079 * 169.04157 * 23 22 21
42 42 H 1.09004 * 109.43082 * 288.88554 * 23 22 21
43 43 H 1.08001 * 118.55290 * 163.49983 * 24 23 22
44 44 H 1.08997 * 109.47358 * 0.02562 * 26 25 24
45 45 H 1.09004 * 109.46788 * 120.00492 * 26 25 24
46 46 H 1.09001 * 109.47289 * 239.99849 * 26 25 24
47 47 H 1.08996 * 109.33977 * 47.78912 * 27 21 20
48 48 H 1.08999 * 109.33866 * 167.29423 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3101 0.0000 0.0000
3 6 2.0636 1.3051 0.0000
4 7 2.9975 1.3297 -1.1285
5 6 2.7485 1.7766 -2.3965
6 6 1.4475 2.3427 -2.9047
7 1 0.7136 2.3466 -2.0988
8 6 0.9330 1.4812 -4.0596
9 6 1.6718 3.7741 -3.3966
10 6 0.3505 4.3827 -3.7900
11 1 -0.5582 3.8062 -3.6989
12 6 0.3019 5.6753 -4.2675
13 7 1.4086 6.3772 -4.3791
14 14 -1.3357 6.4296 -4.7559
15 1 -1.9399 7.1053 -3.5796
16 1 -1.1203 7.4215 -5.8398
17 1 -2.2489 5.3617 -5.2364
18 7 3.8453 1.6249 -3.0834
19 7 4.7604 1.1078 -2.3437
20 6 4.2945 0.9058 -1.1338
21 7 4.9884 0.3638 -0.0636
22 6 6.2831 -0.1865 -0.4985
23 6 7.0544 0.9121 -1.2345
24 6 7.0458 2.1730 -0.4164
25 6 6.2188 2.3714 0.5645
26 6 6.2946 3.6780 1.3114
27 6 5.1914 1.3637 0.9926
28 1 -0.5399 0.9354 0.0004
29 1 -0.5400 -0.9353 -0.0045
30 1 1.8500 -0.9353 0.0004
31 1 1.3590 2.1314 -0.0935
32 1 2.6183 1.4043 0.9329
33 1 -0.0078 1.8910 -4.4274
34 1 1.6670 1.4777 -4.8653
35 1 0.7733 0.4615 -3.7092
36 1 2.1214 4.3660 -2.5994
37 1 2.3375 3.7615 -4.2596
38 1 1.3743 7.2866 -4.7146
39 1 6.8526 -0.5140 0.3712
40 1 6.1161 -1.0314 -1.1664
41 1 8.0835 0.5892 -1.3922
42 1 6.5831 1.1023 -2.1988
43 1 7.7589 2.9482 -0.6553
44 1 7.0843 4.2957 0.8838
45 1 5.3409 4.1995 1.2289
46 1 6.5129 3.4841 2.3616
47 1 4.2488 1.8727 1.1936
48 1 5.5306 0.8655 1.9008
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001121600908.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:13:10
Heat of formation + Delta-G solvation = 125.496004 kcal
Electronic energy + Delta-G solvation = -27694.905143 eV
Core-core repulsion = 24173.438751 eV
Total energy + Delta-G solvation = -3521.466392 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 316.196 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.70934 -39.51358 -36.17732 -35.20407 -34.05650 -32.76348 -32.18264 -31.37405
-28.85478 -27.13498 -26.84711 -26.73551 -24.83351 -24.02750 -22.87562 -21.87724
-21.02951 -19.97841 -19.05257 -18.27269 -16.83466 -16.46008 -16.06622 -15.98984
-15.00040 -14.83904 -14.66840 -14.42907 -14.31565 -13.92135 -13.71675 -13.56016
-13.18729 -12.72494 -12.69626 -12.50443 -12.30688 -12.10634 -11.94831 -11.85589
-11.69944 -11.59258 -11.16234 -10.98747 -10.93779 -10.75792 -10.51154 -10.45567
-10.15099 -9.98329 -9.82829 -9.69961 -9.51155 -9.17609 -9.09834 -8.63015
-8.36344 -7.90815 -6.00129 -4.03702 1.88473 2.11919 2.21715 2.73551
3.30601 3.33476 3.38000 3.40502 3.82257 4.43901 4.58408 4.67560
4.70760 4.74587 4.81202 4.95511 5.07337 5.12249 5.26809 5.31816
5.35323 5.40224 5.42791 5.47954 5.55430 5.59064 5.69899 5.74518
5.76267 5.87153 5.93351 6.08494 6.12967 6.24254 6.27750 6.38054
6.41150 6.52044 6.61320 6.66818 6.74491 6.86502 6.91682 7.00364
7.13560 7.49843 7.63156 7.80102 7.99639 8.35667 9.02046 9.27837
9.59823 11.10925
Molecular weight = 316.20amu
Principal moments of inertia in cm(-1)
A = 0.013741 B = 0.004129 C = 0.003706
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2037.166365 B = 6779.589969 C = 7553.544007
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.175 4.175
3 C 0.136 3.864
4 N -0.475 5.475
5 C 0.219 3.781
6 C 0.000 4.000
7 H 0.070 0.930
8 C -0.124 4.124
9 C 0.039 3.961
10 C -0.520 4.520
11 H 0.058 0.942
12 C 0.060 3.940
13 N -0.891 5.891
14 Si 0.891 3.109
15 H -0.282 1.282
16 H -0.286 1.286
17 H -0.273 1.273
18 N -0.289 5.289
19 N -0.317 5.317
20 C 0.338 3.662
21 N -0.446 5.446
22 C 0.073 3.927
23 C -0.152 4.152
24 C -0.125 4.125
25 C -0.186 4.186
26 C -0.111 4.111
27 C 0.091 3.909
28 H 0.104 0.896
29 H 0.104 0.896
30 H 0.115 0.885
31 H 0.102 0.898
32 H 0.098 0.902
33 H 0.073 0.927
34 H 0.059 0.941
35 H 0.031 0.969
36 H 0.012 0.988
37 H 0.032 0.968
38 H 0.261 0.739
39 H 0.082 0.918
40 H 0.086 0.914
41 H 0.073 0.927
42 H 0.138 0.862
43 H 0.106 0.894
44 H 0.060 0.940
45 H 0.062 0.938
46 H 0.062 0.938
47 H 0.082 0.918
48 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.002 -12.739 14.197 19.997
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.194 4.194
3 C 0.014 3.986
4 N -0.169 5.169
5 C -0.049 4.049
6 C -0.021 4.021
7 H 0.088 0.912
8 C -0.182 4.182
9 C 0.001 3.999
10 C -0.558 4.558
11 H 0.076 0.924
12 C -0.142 4.142
13 N -0.529 5.529
14 Si 0.719 3.281
15 H -0.208 1.208
16 H -0.212 1.212
17 H -0.198 1.198
18 N -0.126 5.126
19 N -0.160 5.160
20 C -0.018 4.018
21 N -0.168 5.168
22 C -0.054 4.054
23 C -0.190 4.190
24 C -0.144 4.144
25 C -0.188 4.188
26 C -0.169 4.169
27 C -0.036 4.036
28 H 0.122 0.878
29 H 0.122 0.878
30 H 0.133 0.867
31 H 0.120 0.880
32 H 0.116 0.884
33 H 0.092 0.908
34 H 0.079 0.921
35 H 0.050 0.950
36 H 0.030 0.970
37 H 0.050 0.950
38 H 0.070 0.930
39 H 0.101 0.899
40 H 0.104 0.896
41 H 0.091 0.909
42 H 0.155 0.845
43 H 0.124 0.876
44 H 0.079 0.921
45 H 0.081 0.919
46 H 0.080 0.920
47 H 0.100 0.900
48 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 6.759 -12.941 13.187 19.673
hybrid contribution -1.170 1.158 0.742 1.806
sum 5.588 -11.783 13.929 19.081
Atomic orbital electron populations
1.23983 0.95550 1.02647 0.97743 1.23032 0.96169 0.97932 1.02231
1.20972 0.92005 0.97668 0.87997 1.46233 1.09912 1.49135 1.11623
1.25520 0.99922 0.99346 0.80073 1.19949 0.85959 0.98721 0.97467
0.91221 1.21652 1.02330 0.96552 0.97693 1.19099 0.97615 0.86308
0.96887 1.21144 0.93055 0.98162 1.43436 0.92364 1.24999 0.96227
0.97268 0.95724 1.69988 1.26620 1.10199 1.46137 0.86619 0.84128
0.79174 0.78226 1.20780 1.21225 1.19772 1.74009 0.97215 1.16185
1.25143 1.74319 1.22442 1.19023 1.00226 1.22384 0.84091 1.01421
0.93913 1.59553 1.20259 1.30321 1.06661 1.22140 0.86085 0.97296
0.99871 1.21702 1.01245 0.92943 1.03152 1.22140 0.98266 0.98769
0.95199 1.21433 0.99466 0.97829 1.00050 1.20805 1.02347 0.94226
0.99491 1.21126 0.98044 0.90555 0.93854 0.87789 0.87800 0.86705
0.87998 0.88363 0.90778 0.92142 0.94966 0.96960 0.95006 0.92955
0.89912 0.89561 0.90890 0.84486 0.87645 0.92081 0.91904 0.91965
0.90036 0.88467
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.61 14.32 29.01 0.42 -1.20 16
2 C -0.17 -1.97 9.85 -36.03 -0.35 -2.33 16
3 C 0.14 1.73 6.11 -5.19 -0.03 1.70 16
4 N -0.47 -7.90 2.79 -115.36 -0.32 -8.23 16
5 C 0.22 4.39 6.58 -154.01 -1.01 3.38 16
6 C 0.00 0.00 2.70 -91.77 -0.25 -0.24 16
7 H 0.07 1.33 6.96 -51.93 -0.36 0.97 16
8 C -0.12 -2.39 8.99 37.15 0.33 -2.06 16
9 C 0.04 1.00 4.43 -27.88 -0.12 0.88 16
10 C -0.52 -14.08 8.41 -34.44 -0.29 -14.37 16
11 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16
12 C 0.06 1.67 5.46 -17.81 -0.10 1.58 16
13 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16
14 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16
15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
18 N -0.29 -6.33 12.18 32.99 0.40 -5.93 16
19 N -0.32 -6.16 8.35 30.32 0.25 -5.91 16
20 C 0.34 5.61 6.20 -318.86 -1.98 3.64 16
21 N -0.45 -5.83 5.07 -175.92 -0.89 -6.72 16
22 C 0.07 0.85 5.86 -3.59 -0.02 0.83 16
23 C -0.15 -1.97 5.53 -28.03 -0.16 -2.12 16
24 C -0.13 -1.66 9.32 -35.89 -0.33 -1.99 16
25 C -0.19 -2.32 5.57 -101.00 -0.56 -2.88 16
26 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16
27 C 0.09 1.04 5.45 -5.27 -0.03 1.01 16
28 H 0.10 1.01 7.84 -52.48 -0.41 0.60 16
29 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16
30 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16
31 H 0.10 1.30 6.91 -51.93 -0.36 0.94 16
32 H 0.10 1.05 5.66 -51.93 -0.29 0.75 16
33 H 0.07 1.44 6.95 -51.93 -0.36 1.07 16
34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16
39 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16
40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16
41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
42 H 0.14 2.24 5.10 -51.93 -0.26 1.98 16
43 H 0.11 1.34 7.63 -52.49 -0.40 0.94 16
44 H 0.06 0.66 7.61 -51.93 -0.40 0.26 16
45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
47 H 0.08 0.92 5.50 -51.93 -0.29 0.64 16
48 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16
LS Contribution 380.31 15.07 5.73 5.73
Total: -1.00 -32.26 380.31 -10.95 -43.21
By element:
Atomic # 1 Polarization: 10.41 SS G_CDS: -7.71 Total: 2.70 kcal
Atomic # 6 Polarization: -10.91 SS G_CDS: -4.13 Total: -15.04 kcal
Atomic # 7 Polarization: -52.93 SS G_CDS: 0.18 Total: -52.75 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -32.26 -10.95 -43.21 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001121600908.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 168.703 kcal
(2) G-P(sol) polarization free energy of solvation -32.260 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.443 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal
(6) G-S(sol) free energy of system = (1) + (5) 125.496 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds