Wall clock time and date at job start Tue Mar 31 2020 11:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50696 * 120.00081 * 2 1 4 4 N 1.46503 * 109.46848 * 234.78613 * 3 2 1 5 5 C 1.36736 * 127.13753 * 89.29914 * 4 3 2 6 6 C 1.50699 * 126.34899 * 359.95888 * 5 4 3 7 7 H 1.09001 * 109.46891 * 0.02562 * 6 5 4 8 8 C 1.52993 * 109.47528 * 240.00348 * 6 5 4 9 9 C 1.53008 * 109.46778 * 120.00164 * 6 5 4 10 10 C 1.50698 * 109.46675 * 185.00345 * 9 6 5 11 11 H 1.08001 * 120.00622 * 359.97438 * 10 9 6 12 12 C 1.37880 * 119.99938 * 180.02562 * 10 9 6 13 13 N 1.31526 * 119.99797 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00397 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46978 * 89.99689 * 14 12 10 16 16 H 1.48497 * 109.47459 * 209.99520 * 14 12 10 17 17 H 1.48499 * 109.47098 * 329.99988 * 14 12 10 18 18 N 1.30304 * 107.30365 * 179.83309 * 5 4 3 19 19 N 1.28523 * 110.05297 * 0.44423 * 18 5 4 20 20 C 1.31216 * 109.86185 * 359.71638 * 19 18 5 21 21 N 1.38584 * 126.47717 * 179.97438 * 20 19 18 22 22 C 1.47246 * 110.99628 * 350.31818 * 21 20 19 23 23 C 1.53084 * 108.47175 * 54.58265 * 22 21 20 24 24 C 1.50306 * 109.72142 * 48.96157 * 23 22 21 25 25 C 1.29825 * 122.89106 * 343.48206 * 24 23 22 26 26 C 1.50699 * 118.35635 * 180.36865 * 25 24 23 27 27 C 1.46844 * 110.99930 * 113.24457 * 21 20 19 28 28 H 1.08003 * 119.99461 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00274 * 179.72681 * 1 2 3 30 30 H 1.08001 * 119.99792 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47241 * 354.77946 * 3 2 1 32 32 H 1.08996 * 109.47338 * 114.78611 * 3 2 1 33 33 H 1.09002 * 109.47301 * 180.02562 * 8 6 5 34 34 H 1.08998 * 109.47042 * 300.00248 * 8 6 5 35 35 H 1.08998 * 109.47404 * 59.99626 * 8 6 5 36 36 H 1.08993 * 109.47275 * 305.00004 * 9 6 5 37 37 H 1.09000 * 109.46879 * 65.00654 * 9 6 5 38 38 H 0.96996 * 119.99843 * 180.02562 * 13 12 10 39 39 H 1.08997 * 109.63640 * 174.27510 * 22 21 20 40 40 H 1.08994 * 109.63320 * 294.68090 * 22 21 20 41 41 H 1.09004 * 109.43079 * 169.04157 * 23 22 21 42 42 H 1.09004 * 109.43082 * 288.88554 * 23 22 21 43 43 H 1.08001 * 118.55290 * 163.49983 * 24 23 22 44 44 H 1.08997 * 109.47358 * 0.02562 * 26 25 24 45 45 H 1.09004 * 109.46788 * 120.00492 * 26 25 24 46 46 H 1.09001 * 109.47289 * 239.99849 * 26 25 24 47 47 H 1.08996 * 109.33977 * 47.78912 * 27 21 20 48 48 H 1.08999 * 109.33866 * 167.29423 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9975 1.3297 -1.1285 5 6 2.7485 1.7766 -2.3965 6 6 1.4475 2.3427 -2.9047 7 1 0.7136 2.3466 -2.0988 8 6 0.9330 1.4812 -4.0596 9 6 1.6718 3.7741 -3.3966 10 6 0.3505 4.3827 -3.7900 11 1 -0.5582 3.8062 -3.6989 12 6 0.3019 5.6753 -4.2675 13 7 1.4086 6.3772 -4.3791 14 14 -1.3357 6.4296 -4.7559 15 1 -1.9399 7.1053 -3.5796 16 1 -1.1203 7.4215 -5.8398 17 1 -2.2489 5.3617 -5.2364 18 7 3.8453 1.6249 -3.0834 19 7 4.7604 1.1078 -2.3437 20 6 4.2945 0.9058 -1.1338 21 7 4.9884 0.3638 -0.0636 22 6 6.2831 -0.1865 -0.4985 23 6 7.0544 0.9121 -1.2345 24 6 7.0458 2.1730 -0.4164 25 6 6.2188 2.3714 0.5645 26 6 6.2946 3.6780 1.3114 27 6 5.1914 1.3637 0.9926 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9353 0.0004 31 1 1.3590 2.1314 -0.0935 32 1 2.6183 1.4043 0.9329 33 1 -0.0078 1.8910 -4.4274 34 1 1.6670 1.4777 -4.8653 35 1 0.7733 0.4615 -3.7092 36 1 2.1214 4.3660 -2.5994 37 1 2.3375 3.7615 -4.2596 38 1 1.3743 7.2866 -4.7146 39 1 6.8526 -0.5140 0.3712 40 1 6.1161 -1.0314 -1.1664 41 1 8.0835 0.5892 -1.3922 42 1 6.5831 1.1023 -2.1988 43 1 7.7589 2.9482 -0.6553 44 1 7.0843 4.2957 0.8838 45 1 5.3409 4.1995 1.2289 46 1 6.5129 3.4841 2.3616 47 1 4.2488 1.8727 1.1936 48 1 5.5306 0.8655 1.9008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121600908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:09 Heat of formation + Delta-G solvation = 109.183645 kcal Electronic energy + Delta-G solvation = -27695.612500 eV Core-core repulsion = 24173.438751 eV Total energy + Delta-G solvation = -3522.173749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.07588 -40.57386 -37.38214 -36.85262 -35.16797 -34.21927 -33.76405 -32.41226 -30.33635 -28.89212 -28.01837 -27.72870 -26.01547 -25.72943 -23.98662 -23.55660 -22.17401 -20.95780 -20.56750 -19.35112 -18.62334 -17.78560 -17.40792 -17.14206 -16.52508 -16.09462 -15.82663 -15.67120 -15.42520 -15.29855 -14.94742 -14.64749 -14.56641 -14.30029 -13.77679 -13.65609 -13.57452 -13.40255 -13.10395 -13.00715 -12.87550 -12.81513 -12.79742 -12.55046 -12.44772 -12.26744 -12.10829 -11.89169 -11.64680 -11.56388 -11.28279 -11.17104 -11.01682 -10.55608 -10.53728 -10.43266 -9.64773 -9.25397 -8.15851 -6.27692 0.79974 0.94429 1.18615 1.43661 1.45670 1.56434 1.63027 1.88068 2.44125 2.71677 3.18269 3.46465 3.63269 3.72757 3.75173 3.80879 3.88206 3.95161 4.07637 4.18604 4.32946 4.42044 4.44241 4.48924 4.52031 4.54805 4.60682 4.66790 4.70455 4.75670 4.82739 4.89939 4.98684 5.03332 5.06206 5.10273 5.18622 5.27810 5.37501 5.45781 5.56409 5.59604 5.61268 5.67228 5.69678 5.74143 5.84034 5.95758 6.20780 6.27649 6.88150 7.41674 7.84182 8.96653 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013741 B = 0.004129 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.166365 B = 6779.589969 C = 7553.544007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.188 4.188 3 C 0.128 3.872 4 N -0.470 5.470 5 C 0.202 3.798 6 C 0.012 3.988 7 H 0.090 0.910 8 C -0.115 4.115 9 C 0.053 3.947 10 C -0.527 4.527 11 H 0.077 0.923 12 C -0.001 4.001 13 N -0.938 5.938 14 Si 0.966 3.034 15 H -0.271 1.271 16 H -0.290 1.290 17 H -0.256 1.256 18 N -0.332 5.332 19 N -0.342 5.342 20 C 0.353 3.647 21 N -0.438 5.438 22 C 0.073 3.927 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.186 4.186 26 C -0.111 4.111 27 C 0.089 3.911 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.059 0.941 36 H -0.023 1.023 37 H -0.012 1.012 38 H 0.261 0.739 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.316 -14.284 16.658 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.207 4.207 3 C 0.008 3.992 4 N -0.164 5.164 5 C -0.067 4.067 6 C -0.009 4.009 7 H 0.108 0.892 8 C -0.173 4.173 9 C 0.014 3.986 10 C -0.565 4.565 11 H 0.095 0.905 12 C -0.198 4.198 13 N -0.578 5.578 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.216 1.216 17 H -0.180 1.180 18 N -0.169 5.169 19 N -0.186 5.186 20 C -0.004 4.004 21 N -0.160 5.160 22 C -0.053 4.053 23 C -0.188 4.188 24 C -0.167 4.167 25 C -0.188 4.188 26 C -0.168 4.168 27 C -0.038 4.038 28 H 0.125 0.875 29 H 0.141 0.859 30 H 0.133 0.867 31 H 0.118 0.882 32 H 0.138 0.862 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.078 0.922 36 H -0.005 1.005 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.059 -14.510 15.676 21.952 hybrid contribution -0.558 1.617 0.069 1.712 sum 4.501 -12.894 15.745 20.843 Atomic orbital electron populations 1.24201 0.95122 1.03734 0.95373 1.22901 0.96520 0.96944 1.04321 1.21311 0.91874 0.98679 0.87377 1.46375 1.10431 1.48259 1.11326 1.25200 0.99298 1.00596 0.81619 1.19675 0.87081 0.95620 0.98479 0.89162 1.21552 1.01388 0.97833 0.96564 1.18827 0.96243 0.89472 0.94011 1.21569 0.93877 0.98449 1.42588 0.90542 1.26005 1.00152 0.98004 0.95689 1.70162 1.29484 1.10622 1.47551 0.85437 0.79309 0.78366 0.77894 1.19678 1.21583 1.17960 1.73919 0.98395 1.17454 1.27173 1.74372 1.22248 1.20400 1.01542 1.22818 0.84150 0.99321 0.94078 1.59727 1.20689 1.30107 1.05509 1.22276 0.85451 0.96469 1.01149 1.21582 1.02219 0.93516 1.01496 1.22231 0.99330 0.99124 0.96055 1.21729 0.98871 0.98543 0.99649 1.20827 1.01635 0.93334 1.01013 1.21337 0.97914 0.90305 0.94222 0.87467 0.85925 0.86738 0.88194 0.86212 0.90783 0.94222 0.92192 1.00508 0.99373 0.93023 0.86463 0.89903 0.89097 0.88104 0.88136 0.92516 0.92936 0.89185 0.89838 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 14.32 67.77 0.97 -1.51 16 2 C -0.19 -3.78 9.85 25.64 0.25 -3.52 16 3 C 0.13 3.04 6.11 85.63 0.52 3.56 16 4 N -0.47 -15.46 2.79 -518.90 -1.45 -16.90 16 5 C 0.20 8.30 6.58 137.64 0.91 9.20 16 6 C 0.01 0.52 2.70 -11.54 -0.03 0.49 16 7 H 0.09 3.35 6.96 -2.39 -0.02 3.34 16 8 C -0.12 -4.43 8.99 71.98 0.65 -3.78 16 9 C 0.05 2.84 4.43 29.85 0.13 2.97 16 10 C -0.53 -28.84 8.41 25.60 0.22 -28.63 16 11 H 0.08 3.83 7.06 -2.91 -0.02 3.81 16 12 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 13 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 14 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 16 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 17 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 18 N -0.33 -15.29 12.18 -49.53 -0.60 -15.89 16 19 N -0.34 -13.79 8.35 -58.00 -0.48 -14.27 16 20 C 0.35 11.62 6.20 260.11 1.61 13.23 16 21 N -0.44 -10.59 5.07 -710.48 -3.60 -14.19 16 22 C 0.07 1.57 5.86 86.26 0.51 2.08 16 23 C -0.15 -3.85 5.53 29.75 0.16 -3.68 16 24 C -0.15 -3.91 9.32 26.73 0.25 -3.66 16 25 C -0.19 -4.38 5.57 -15.45 -0.09 -4.47 16 26 C -0.11 -2.28 10.01 71.24 0.71 -1.56 16 27 C 0.09 1.77 5.45 85.39 0.47 2.23 16 28 H 0.11 1.76 7.84 -2.91 -0.02 1.74 16 29 H 0.12 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.11 2.34 8.06 -2.91 -0.02 2.31 16 31 H 0.10 2.40 6.91 -2.39 -0.02 2.38 16 32 H 0.12 2.26 5.66 -2.39 -0.01 2.24 16 33 H 0.07 2.80 6.95 -2.39 -0.02 2.79 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.12 1.75 8.08 -2.39 -0.02 1.73 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.10 3.46 5.10 -2.39 -0.01 3.45 16 43 H 0.10 2.64 7.63 -2.91 -0.02 2.62 16 44 H 0.06 1.20 7.61 -2.39 -0.02 1.18 16 45 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.08 1.66 5.50 -2.39 -0.01 1.65 16 48 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -73.89 380.31 4.82 -69.07 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.94 Total: 21.31 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 7.70 Total: -16.65 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -5.85 Total: -119.13 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -73.89 4.82 -69.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121600908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.254 kcal (2) G-P(sol) polarization free energy of solvation -73.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds