Wall clock time and date at job start Tue Mar 31 2020 11:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00023 * 2 1 4 4 N 1.46499 * 109.47406 * 124.99631 * 3 2 1 5 5 C 1.36735 * 127.13480 * 89.97574 * 4 3 2 6 6 C 1.50699 * 126.34764 * 359.97438 * 5 4 3 7 7 C 1.53007 * 109.46826 * 269.99428 * 6 5 4 8 8 C 1.50699 * 109.46826 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00378 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99735 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00231 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99998 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47068 * 89.99699 * 12 10 8 14 14 H 1.48497 * 109.46928 * 209.99669 * 12 10 8 15 15 H 1.48501 * 109.46861 * 329.99900 * 12 10 8 16 16 N 1.30294 * 107.30568 * 179.97438 * 5 4 3 17 17 N 1.28530 * 110.05622 * 0.02562 * 16 5 4 18 18 C 1.31221 * 109.85675 * 359.97438 * 17 16 5 19 19 N 1.38582 * 126.47333 * 179.97438 * 18 17 16 20 20 C 1.48525 * 110.99930 * 0.02562 * 19 18 17 21 21 C 1.54320 * 104.67344 * 200.80627 * 20 19 18 22 22 H 1.09000 * 111.82367 * 261.50791 * 21 20 19 23 23 C 1.54162 * 108.86625 * 137.48726 * 21 20 19 24 24 C 1.54850 * 104.32467 * 223.67691 * 23 21 20 25 25 C 1.54843 * 102.73315 * 38.18026 * 24 23 21 26 26 C 1.54167 * 104.32792 * 321.81950 * 25 24 23 27 27 H 1.08997 * 111.79225 * 261.29091 * 26 25 24 28 28 C 1.48527 * 111.00171 * 244.59486 * 19 18 17 29 29 H 1.08000 * 119.99908 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00258 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00457 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46843 * 4.99481 * 3 2 1 33 33 H 1.09003 * 109.46890 * 244.99972 * 3 2 1 34 34 H 1.08995 * 109.47753 * 29.99689 * 6 5 4 35 35 H 1.09006 * 109.47027 * 150.00207 * 6 5 4 36 36 H 1.08997 * 109.47278 * 300.00090 * 7 6 5 37 37 H 1.09006 * 109.46681 * 60.00567 * 7 6 5 38 38 H 0.96997 * 120.00308 * 180.02562 * 11 10 8 39 39 H 1.09008 * 110.39475 * 319.59941 * 20 19 18 40 40 H 1.08998 * 110.40118 * 81.88907 * 20 19 18 41 41 H 1.09004 * 110.46442 * 342.38583 * 23 21 20 42 42 H 1.09001 * 110.46344 * 104.83590 * 23 21 20 43 43 H 1.08995 * 110.75880 * 156.49191 * 24 23 21 44 44 H 1.09004 * 110.75494 * 279.68597 * 24 23 21 45 45 H 1.09002 * 110.46161 * 80.53048 * 25 24 23 46 46 H 1.09002 * 110.46465 * 203.10317 * 25 24 23 47 47 H 1.08998 * 110.39817 * 277.99203 * 28 19 18 48 48 H 1.09000 * 110.39867 * 40.39583 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2910 0.9002 1.1439 6 6 5.0436 0.2995 -0.0153 7 6 4.8568 -1.2191 -0.0125 8 6 5.6100 -1.8199 -1.1714 9 1 6.1665 -1.1825 -1.8424 10 6 5.5885 -3.1834 -1.3749 11 7 4.9112 -3.9598 -0.5574 12 14 6.5226 -3.9283 -2.8110 13 1 7.9040 -4.2642 -2.3820 14 1 5.8313 -5.1617 -3.2647 15 1 6.5750 -2.9508 -3.9277 16 7 4.7560 1.1044 2.3438 17 7 3.8475 1.6313 3.0848 18 6 2.7453 1.7933 2.3914 19 7 1.5537 2.3305 2.8519 20 6 1.6633 2.7219 4.2805 21 6 0.2054 2.7796 4.7830 22 1 -0.1807 3.7989 4.7903 23 6 0.1333 2.1302 6.1793 24 6 -1.1380 1.2476 6.1261 25 6 -1.0984 0.6784 4.6866 26 6 -0.5832 1.8500 3.8272 27 1 -1.3981 2.3757 3.3295 28 6 0.4698 1.3152 2.8337 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.6611 0.7109 -0.9493 35 1 6.1037 0.5353 0.0784 36 1 5.2395 -1.6306 0.9214 37 1 3.7967 -1.4549 -0.1063 38 1 4.8964 -4.9190 -0.7004 39 1 2.2276 1.9736 4.8372 40 1 2.1373 3.6993 4.3714 41 1 1.0158 1.5166 6.3602 42 1 0.0369 2.8944 6.9505 43 1 -1.0816 0.4444 6.8608 44 1 -2.0331 1.8497 6.2820 45 1 -0.4120 -0.1665 4.6297 46 1 -2.0971 0.3814 4.3666 47 1 0.0426 1.2336 1.8342 48 1 0.8489 0.3488 3.1658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121626436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:34 Heat of formation + Delta-G solvation = 94.950745 kcal Electronic energy + Delta-G solvation = -27302.421712 eV Core-core repulsion = 23779.630779 eV Total energy + Delta-G solvation = -3522.790934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.62151 -40.11725 -36.23771 -35.77939 -33.98068 -32.61576 -31.76886 -30.80223 -29.84037 -27.76997 -26.62013 -25.99747 -25.09764 -22.88695 -21.89697 -21.24568 -20.71330 -20.23583 -19.62457 -19.00644 -17.19340 -16.81709 -16.39885 -15.90184 -15.72378 -15.03317 -14.81502 -14.73089 -14.48401 -14.04103 -13.75279 -13.41814 -13.03352 -12.83042 -12.67683 -12.38814 -12.31293 -12.16863 -11.52989 -11.42031 -11.37396 -11.32055 -11.11438 -10.99563 -10.99294 -10.93030 -10.89686 -10.76379 -10.67211 -10.25061 -10.02929 -9.88873 -9.76190 -9.49904 -9.31623 -9.19376 -8.42154 -7.94663 -6.07206 -4.10959 1.89414 2.19439 2.76828 3.28514 3.28795 3.35372 3.37937 3.85235 4.11627 4.22487 4.39890 4.45643 4.69675 4.78197 4.92747 4.95249 4.99315 5.09766 5.15022 5.19123 5.21451 5.25712 5.29088 5.39718 5.42078 5.45189 5.48341 5.59113 5.67076 5.72563 5.78131 5.80779 5.84999 5.89530 5.95347 6.11157 6.13499 6.19944 6.35182 6.43967 6.53507 6.56730 6.61235 6.70222 6.95763 7.46009 7.55370 7.68175 7.90522 8.28289 8.94945 9.23376 9.53610 11.03790 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.003269 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.316009 B = 8563.042716 C = 8925.642297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.170 4.170 3 C 0.139 3.861 4 N -0.474 5.474 5 C 0.213 3.787 6 C -0.031 4.031 7 C 0.033 3.967 8 C -0.523 4.523 9 H 0.059 0.941 10 C 0.060 3.940 11 N -0.892 5.892 12 Si 0.894 3.106 13 H -0.279 1.279 14 H -0.287 1.287 15 H -0.273 1.273 16 N -0.296 5.296 17 N -0.323 5.323 18 C 0.328 3.672 19 N -0.431 5.431 20 C 0.056 3.944 21 C -0.094 4.094 22 H 0.089 0.911 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.089 4.089 27 H 0.090 0.910 28 C 0.033 3.967 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.094 0.906 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.208 12.797 7.629 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.188 4.188 3 C 0.016 3.984 4 N -0.168 5.168 5 C -0.055 4.055 6 C -0.071 4.071 7 C -0.006 4.006 8 C -0.562 4.562 9 H 0.077 0.923 10 C -0.142 4.142 11 N -0.531 5.531 12 Si 0.721 3.279 13 H -0.205 1.205 14 H -0.213 1.213 15 H -0.198 1.198 16 N -0.134 5.134 17 N -0.167 5.167 18 C -0.028 4.028 19 N -0.154 5.154 20 C -0.071 4.071 21 C -0.113 4.113 22 H 0.108 0.892 23 C -0.159 4.159 24 C -0.161 4.161 25 C -0.159 4.159 26 C -0.109 4.109 27 H 0.108 0.892 28 C -0.094 4.094 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.148 0.852 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.043 0.957 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.385 13.121 8.479 21.926 hybrid contribution -0.235 -1.188 -1.522 1.945 sum -15.621 11.933 6.957 20.852 Atomic orbital electron populations 1.23869 0.95484 1.02126 0.99883 1.23415 0.96408 0.98991 1.00035 1.20932 0.91912 0.97073 0.88460 1.46190 1.12130 1.48451 1.10012 1.25564 0.81914 0.99398 0.98606 1.20439 0.98205 0.99350 0.89106 1.19094 0.97280 0.86118 0.98062 1.21144 1.31170 0.92163 1.11680 0.92317 1.25000 0.95444 0.97276 0.96474 1.69966 1.41381 1.04551 1.37208 0.86569 0.80033 0.78695 0.82573 1.20528 1.21255 1.19802 1.73993 1.22948 1.16194 1.00282 1.74481 0.98014 1.19335 1.24848 1.22650 0.95151 1.01202 0.83828 1.62164 1.00287 1.32041 1.20948 1.23229 0.96429 1.02482 0.84914 1.22574 0.94425 0.99628 0.94659 0.89223 1.22522 0.98559 0.98860 0.95963 1.22492 0.97905 0.99014 0.96651 1.22518 1.01325 0.97277 0.94801 1.22503 0.96997 0.96007 0.95354 0.89208 1.23712 0.90809 0.93337 1.01566 0.87577 0.88354 0.85228 0.88553 0.87506 0.91305 0.89326 0.95737 0.96606 0.92900 0.90951 0.89537 0.91066 0.91405 0.91494 0.91440 0.91245 0.91393 0.88812 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 12.21 29.02 0.35 -1.52 16 2 C -0.17 -2.32 9.20 -36.03 -0.33 -2.65 16 3 C 0.14 1.88 5.76 -5.20 -0.03 1.85 16 4 N -0.47 -8.17 2.79 -115.37 -0.32 -8.49 16 5 C 0.21 4.31 7.32 -154.02 -1.13 3.19 16 6 C -0.03 -0.64 5.53 -27.88 -0.15 -0.79 16 7 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 8 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 9 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 12 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 16 N -0.30 -6.59 12.18 32.99 0.40 -6.19 16 17 N -0.32 -6.61 10.98 30.32 0.33 -6.28 16 18 C 0.33 5.74 6.99 -318.87 -2.23 3.51 16 19 N -0.43 -5.94 5.42 -170.21 -0.92 -6.86 16 20 C 0.06 0.69 5.63 -2.23 -0.01 0.68 16 21 C -0.09 -0.85 3.93 -88.32 -0.35 -1.20 16 22 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 23 C -0.12 -1.00 6.36 -25.15 -0.16 -1.16 16 24 C -0.12 -0.92 6.90 -24.78 -0.17 -1.09 16 25 C -0.12 -1.02 6.36 -25.15 -0.16 -1.18 16 26 C -0.09 -0.81 3.93 -88.31 -0.35 -1.15 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 C 0.03 0.38 5.21 -2.22 -0.01 0.37 16 29 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.10 0.84 7.21 -52.49 -0.38 0.46 16 31 H 0.13 2.23 6.62 -52.49 -0.35 1.88 16 32 H 0.10 1.10 7.71 -51.93 -0.40 0.69 16 33 H 0.11 1.37 7.25 -51.93 -0.38 0.99 16 34 H 0.07 1.26 7.27 -51.93 -0.38 0.88 16 35 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.41 6.70 -51.93 -0.35 0.06 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.07 1.02 6.47 -51.92 -0.34 0.68 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.68 7.18 -51.93 -0.37 0.31 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.68 7.18 -51.93 -0.37 0.31 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 1.02 4.05 -51.93 -0.21 0.81 16 48 H 0.06 0.79 7.01 -51.93 -0.36 0.43 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -31.99 372.42 -12.11 -44.11 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.65 Total: 0.89 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -5.28 Total: -13.41 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.23 Total: -53.28 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.99 -12.11 -44.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121626436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.057 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds