Wall clock time and date at job start Tue Mar 31 2020 11:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00023 * 2 1 4 4 N 1.46499 * 109.47406 * 124.99631 * 3 2 1 5 5 C 1.36735 * 127.13480 * 89.97574 * 4 3 2 6 6 C 1.50699 * 126.34764 * 359.97438 * 5 4 3 7 7 C 1.53007 * 109.46826 * 269.99428 * 6 5 4 8 8 C 1.50699 * 109.46826 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00378 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99735 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00231 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99998 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47068 * 89.99699 * 12 10 8 14 14 H 1.48497 * 109.46928 * 209.99669 * 12 10 8 15 15 H 1.48501 * 109.46861 * 329.99900 * 12 10 8 16 16 N 1.30294 * 107.30568 * 179.97438 * 5 4 3 17 17 N 1.28530 * 110.05622 * 0.02562 * 16 5 4 18 18 C 1.31221 * 109.85675 * 359.97438 * 17 16 5 19 19 N 1.38582 * 126.47333 * 179.97438 * 18 17 16 20 20 C 1.48525 * 110.99930 * 0.02562 * 19 18 17 21 21 C 1.54320 * 104.67344 * 200.80627 * 20 19 18 22 22 H 1.09000 * 111.82367 * 261.50791 * 21 20 19 23 23 C 1.54162 * 108.86625 * 137.48726 * 21 20 19 24 24 C 1.54850 * 104.32467 * 223.67691 * 23 21 20 25 25 C 1.54843 * 102.73315 * 38.18026 * 24 23 21 26 26 C 1.54167 * 104.32792 * 321.81950 * 25 24 23 27 27 H 1.08997 * 111.79225 * 261.29091 * 26 25 24 28 28 C 1.48527 * 111.00171 * 244.59486 * 19 18 17 29 29 H 1.08000 * 119.99908 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00258 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00457 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46843 * 4.99481 * 3 2 1 33 33 H 1.09003 * 109.46890 * 244.99972 * 3 2 1 34 34 H 1.08995 * 109.47753 * 29.99689 * 6 5 4 35 35 H 1.09006 * 109.47027 * 150.00207 * 6 5 4 36 36 H 1.08997 * 109.47278 * 300.00090 * 7 6 5 37 37 H 1.09006 * 109.46681 * 60.00567 * 7 6 5 38 38 H 0.96997 * 120.00308 * 180.02562 * 11 10 8 39 39 H 1.09008 * 110.39475 * 319.59941 * 20 19 18 40 40 H 1.08998 * 110.40118 * 81.88907 * 20 19 18 41 41 H 1.09004 * 110.46442 * 342.38583 * 23 21 20 42 42 H 1.09001 * 110.46344 * 104.83590 * 23 21 20 43 43 H 1.08995 * 110.75880 * 156.49191 * 24 23 21 44 44 H 1.09004 * 110.75494 * 279.68597 * 24 23 21 45 45 H 1.09002 * 110.46161 * 80.53048 * 25 24 23 46 46 H 1.09002 * 110.46465 * 203.10317 * 25 24 23 47 47 H 1.08998 * 110.39817 * 277.99203 * 28 19 18 48 48 H 1.09000 * 110.39867 * 40.39583 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2910 0.9002 1.1439 6 6 5.0436 0.2995 -0.0153 7 6 4.8568 -1.2191 -0.0125 8 6 5.6100 -1.8199 -1.1714 9 1 6.1665 -1.1825 -1.8424 10 6 5.5885 -3.1834 -1.3749 11 7 4.9112 -3.9598 -0.5574 12 14 6.5226 -3.9283 -2.8110 13 1 7.9040 -4.2642 -2.3820 14 1 5.8313 -5.1617 -3.2647 15 1 6.5750 -2.9508 -3.9277 16 7 4.7560 1.1044 2.3438 17 7 3.8475 1.6313 3.0848 18 6 2.7453 1.7933 2.3914 19 7 1.5537 2.3305 2.8519 20 6 1.6633 2.7219 4.2805 21 6 0.2054 2.7796 4.7830 22 1 -0.1807 3.7989 4.7903 23 6 0.1333 2.1302 6.1793 24 6 -1.1380 1.2476 6.1261 25 6 -1.0984 0.6784 4.6866 26 6 -0.5832 1.8500 3.8272 27 1 -1.3981 2.3757 3.3295 28 6 0.4698 1.3152 2.8337 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.6611 0.7109 -0.9493 35 1 6.1037 0.5353 0.0784 36 1 5.2395 -1.6306 0.9214 37 1 3.7967 -1.4549 -0.1063 38 1 4.8964 -4.9190 -0.7004 39 1 2.2276 1.9736 4.8372 40 1 2.1373 3.6993 4.3714 41 1 1.0158 1.5166 6.3602 42 1 0.0369 2.8944 6.9505 43 1 -1.0816 0.4444 6.8608 44 1 -2.0331 1.8497 6.2820 45 1 -0.4120 -0.1665 4.6297 46 1 -2.0971 0.3814 4.3666 47 1 0.0426 1.2336 1.8342 48 1 0.8489 0.3488 3.1658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121626436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:33 Heat of formation + Delta-G solvation = 78.729951 kcal Electronic energy + Delta-G solvation = -27303.125099 eV Core-core repulsion = 23779.630779 eV Total energy + Delta-G solvation = -3523.494320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -44.07549 -41.02027 -37.42531 -36.87358 -35.81567 -33.98535 -33.49670 -31.63603 -31.09325 -29.15335 -27.75248 -27.26372 -26.57951 -23.97362 -23.76367 -22.11717 -22.01961 -21.32289 -20.79789 -19.95204 -18.72311 -18.18390 -17.74719 -17.21502 -16.91078 -16.51248 -16.10579 -15.78307 -15.59179 -15.15080 -14.95496 -14.85261 -14.54734 -14.25854 -13.76955 -13.61679 -13.47781 -13.22271 -13.19085 -12.89191 -12.65512 -12.55672 -12.48574 -12.15832 -12.05094 -11.97359 -11.85220 -11.78081 -11.70834 -11.56587 -11.51360 -11.43353 -11.31008 -11.16796 -10.68155 -10.58166 -10.49787 -9.39272 -8.21539 -6.33665 0.64482 0.93372 1.41540 1.43371 1.53760 1.54788 1.74671 2.40710 2.69614 3.12648 3.28904 3.38738 3.51000 3.60485 3.71562 3.76747 3.95405 4.05773 4.09646 4.19515 4.29868 4.32563 4.39841 4.43310 4.46617 4.52732 4.61294 4.64512 4.76289 4.80587 4.84375 4.85783 4.89725 4.91691 4.93393 5.00328 5.10892 5.21307 5.21954 5.35757 5.40051 5.45401 5.48721 5.49541 5.54197 5.60520 5.64883 5.78017 6.11901 6.16647 6.81705 7.36077 7.70703 8.90380 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.003269 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.316009 B = 8563.042716 C = 8925.642297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.205 4.205 3 C 0.137 3.863 4 N -0.469 5.469 5 C 0.198 3.802 6 C -0.015 4.015 7 C 0.045 3.955 8 C -0.539 4.539 9 H 0.071 0.929 10 C 0.002 3.998 11 N -0.933 5.933 12 Si 0.967 3.033 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.256 1.256 16 N -0.334 5.334 17 N -0.359 5.359 18 C 0.343 3.657 19 N -0.423 5.423 20 C 0.052 3.948 21 C -0.084 4.084 22 H 0.114 0.886 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.081 4.081 27 H 0.119 0.881 28 C 0.034 3.966 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.087 0.913 36 H -0.022 1.022 37 H 0.000 1.000 38 H 0.263 0.737 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.108 0.892 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.049 14.669 6.435 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.224 4.224 3 C 0.016 3.984 4 N -0.163 5.163 5 C -0.071 4.071 6 C -0.055 4.055 7 C 0.007 3.993 8 C -0.577 4.577 9 H 0.090 0.910 10 C -0.196 4.196 11 N -0.573 5.573 12 Si 0.791 3.209 13 H -0.202 1.202 14 H -0.209 1.209 15 H -0.180 1.180 16 N -0.172 5.172 17 N -0.203 5.203 18 C -0.014 4.014 19 N -0.147 5.147 20 C -0.075 4.075 21 C -0.103 4.103 22 H 0.132 0.868 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.160 4.160 26 C -0.100 4.100 27 H 0.137 0.863 28 C -0.093 4.093 29 H 0.131 0.869 30 H 0.152 0.848 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.113 0.887 35 H 0.105 0.895 36 H -0.004 1.004 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.126 0.874 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -18.240 15.008 7.276 24.716 hybrid contribution 0.526 -1.771 -1.076 2.138 sum -17.715 13.237 6.200 22.967 Atomic orbital electron populations 1.24166 0.94175 1.04120 0.94954 1.23062 0.97406 0.97230 1.04664 1.21249 0.91863 0.97972 0.87330 1.46359 1.11564 1.47450 1.10905 1.25333 0.83422 1.00339 0.98016 1.20151 0.98545 0.96132 0.90662 1.18846 0.95793 0.89260 0.95408 1.21583 1.31157 0.92797 1.12123 0.91044 1.25973 0.96327 0.97892 0.99389 1.70121 1.43030 1.04864 1.39310 0.85418 0.78283 0.77956 0.79226 1.20223 1.20929 1.18012 1.73876 1.24666 1.17337 1.01327 1.74382 0.99116 1.21174 1.25604 1.23078 0.95610 0.99092 0.83640 1.62345 0.98900 1.31774 1.21683 1.23336 0.98791 1.01522 0.83840 1.22621 0.91803 1.01072 0.94795 0.86817 1.22522 0.98232 0.99177 0.96082 1.22493 0.98102 0.99027 0.95924 1.22518 1.01635 0.96335 0.95520 1.22587 0.96637 0.96189 0.94617 0.86329 1.23798 0.90662 0.91598 1.03214 0.86867 0.84788 0.89896 0.85423 0.86907 0.88657 0.89465 1.00353 0.98139 0.92843 0.93593 0.89459 0.93347 0.89714 0.91561 0.89333 0.93681 0.89527 0.87449 0.95566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 12.21 67.78 0.83 -1.74 16 2 C -0.20 -5.56 9.20 25.65 0.24 -5.33 16 3 C 0.14 3.56 5.76 85.63 0.49 4.05 16 4 N -0.47 -16.49 2.79 -518.91 -1.45 -17.93 16 5 C 0.20 8.41 7.32 137.64 1.01 9.42 16 6 C -0.02 -0.65 5.53 29.85 0.16 -0.48 16 7 C 0.05 2.40 4.96 29.85 0.15 2.55 16 8 C -0.54 -29.89 9.11 25.60 0.23 -29.66 16 9 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 10 C 0.00 0.13 5.46 84.66 0.46 0.59 16 11 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 12 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 16 N -0.33 -15.75 12.18 -49.54 -0.60 -16.35 16 17 N -0.36 -15.48 10.98 -58.00 -0.64 -16.12 16 18 C 0.34 12.25 6.99 260.11 1.82 14.07 16 19 N -0.42 -11.29 5.42 -692.43 -3.75 -15.04 16 20 C 0.05 1.25 5.63 86.44 0.49 1.74 16 21 C -0.08 -1.32 3.93 -9.30 -0.04 -1.36 16 22 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 23 C -0.12 -1.82 6.36 31.62 0.20 -1.62 16 24 C -0.12 -1.47 6.90 31.86 0.22 -1.25 16 25 C -0.12 -1.79 6.36 31.62 0.20 -1.58 16 26 C -0.08 -1.22 3.93 -9.30 -0.04 -1.26 16 27 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 28 C 0.03 0.74 5.21 86.44 0.45 1.19 16 29 H 0.11 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.13 1.61 7.21 -2.91 -0.02 1.59 16 31 H 0.08 3.07 6.62 -2.91 -0.02 3.06 16 32 H 0.13 2.50 7.71 -2.39 -0.02 2.48 16 33 H 0.11 2.77 7.25 -2.39 -0.02 2.75 16 34 H 0.10 3.50 7.27 -2.39 -0.02 3.48 16 35 H 0.09 3.70 8.14 -2.38 -0.02 3.68 16 36 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 37 H 0.00 0.02 6.70 -2.38 -0.02 0.00 16 38 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.05 1.37 6.47 -2.38 -0.02 1.35 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 0.94 7.18 -2.38 -0.02 0.93 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.04 0.88 7.18 -2.39 -0.02 0.86 16 46 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.11 2.02 4.05 -2.39 -0.01 2.01 16 48 H 0.03 0.75 7.01 -2.39 -0.02 0.73 16 Total: -1.00 -74.62 372.42 3.69 -70.93 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.94 Total: 16.09 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 6.88 Total: -10.67 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -6.16 Total: -121.94 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -74.62 3.69 -70.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121626436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.660 kcal (2) G-P(sol) polarization free energy of solvation -74.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds