Wall clock time and date at job start Tue Mar 31 2020 11:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00268 * 2 1 4 4 N 1.46498 * 109.47489 * 124.99835 * 3 2 1 5 5 C 1.36736 * 127.13588 * 91.25895 * 4 3 2 6 6 C 1.50702 * 126.34726 * 359.76023 * 5 4 3 7 7 C 1.52991 * 109.47088 * 90.00020 * 6 5 4 8 8 C 1.53005 * 109.47228 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47223 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00092 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99954 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99895 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47348 * 89.99525 * 13 11 9 15 15 H 1.48505 * 109.46908 * 209.99384 * 13 11 9 16 16 H 1.48498 * 109.47130 * 329.99307 * 13 11 9 17 17 N 1.30297 * 107.30398 * 180.02562 * 5 4 3 18 18 N 1.28524 * 110.05150 * 359.97438 * 17 5 4 19 19 C 1.31216 * 109.86614 * 0.02562 * 18 17 5 20 20 N 1.38580 * 126.47630 * 179.97438 * 19 18 17 21 21 C 1.46825 * 111.00043 * 62.83397 * 20 19 18 22 22 C 1.53295 * 109.39910 * 170.24656 * 21 20 19 23 23 C 1.51433 * 108.24224 * 53.79370 * 22 21 20 24 24 C 1.31002 * 121.11467 * 130.94794 * 23 22 21 25 25 C 1.51443 * 117.77861 * 310.97132 * 23 22 21 26 26 C 1.46833 * 110.99931 * 298.14707 * 20 19 18 27 27 H 1.08003 * 119.99931 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00002 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99576 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.46975 * 4.99332 * 3 2 1 31 31 H 1.09000 * 109.47141 * 245.00118 * 3 2 1 32 32 H 1.09003 * 109.46776 * 209.99932 * 6 5 4 33 33 H 1.08996 * 109.47050 * 329.99947 * 6 5 4 34 34 H 1.08994 * 109.47449 * 299.99554 * 7 6 5 35 35 H 1.08996 * 109.47234 * 60.00040 * 7 6 5 36 36 H 1.09003 * 109.46707 * 299.99955 * 8 7 6 37 37 H 1.08996 * 109.46979 * 59.99885 * 8 7 6 38 38 H 0.96993 * 119.99532 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.47745 * 290.22748 * 21 20 19 40 40 H 1.08996 * 109.48492 * 50.26802 * 21 20 19 41 41 H 1.08996 * 109.71250 * 294.10811 * 22 21 20 42 42 H 1.09006 * 109.70852 * 173.47847 * 22 21 20 43 43 H 1.08000 * 120.00466 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.99568 * 0.02562 * 24 23 22 45 45 H 1.08995 * 109.70596 * 289.33601 * 25 23 22 46 46 H 1.08999 * 109.70741 * 168.71728 * 25 23 22 47 47 H 1.09000 * 109.48153 * 309.73391 * 26 20 19 48 48 H 1.08993 * 109.48262 * 69.75764 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.2984 0.9225 1.1373 6 6 5.0593 0.3472 -0.0294 7 6 5.7349 1.4793 -0.8057 8 6 6.5080 0.8952 -1.9899 9 6 7.1739 2.0102 -2.7541 10 1 7.0572 3.0332 -2.4282 11 6 7.9315 1.7245 -3.8702 12 7 8.0733 0.4788 -4.2674 13 14 8.7564 3.1067 -4.8180 14 1 10.1133 3.3459 -4.2639 15 1 8.8661 2.7284 -6.2498 16 1 7.9457 4.3447 -4.6938 17 7 4.7601 1.1166 2.3402 18 7 3.8431 1.6174 3.0886 19 6 2.7380 1.7705 2.3980 20 7 1.5377 2.2809 2.8663 21 6 1.6906 3.6774 3.2930 22 6 0.3083 4.2788 3.5717 23 6 -0.4101 3.3798 4.5560 24 6 -0.9905 3.8712 5.6227 25 6 -0.4349 1.8936 4.2663 26 6 0.9946 1.4438 3.9435 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 5.8174 -0.3450 0.3371 33 1 4.3702 -0.1832 -0.6865 34 1 4.9769 2.1714 -1.1721 35 1 6.4240 2.0097 -0.1485 36 1 7.2661 0.2033 -1.6230 37 1 5.8192 0.3645 -2.6471 38 1 8.6065 0.2778 -5.0523 39 1 2.2937 3.7164 4.2001 40 1 2.1825 4.2467 2.5044 41 1 -0.2610 4.3373 2.6441 42 1 0.4204 5.2756 3.9984 43 1 -1.4976 3.2134 6.3131 44 1 -0.9618 4.9341 5.8118 45 1 -1.0840 1.6962 3.4132 46 1 -0.8013 1.3548 5.1401 47 1 0.9844 0.4017 3.6240 48 1 1.6174 1.5455 4.8321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121689186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:39 Heat of formation + Delta-G solvation = 91.765577 kcal Electronic energy + Delta-G solvation = -26406.932150 eV Core-core repulsion = 22884.003097 eV Total energy + Delta-G solvation = -3522.929053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.10359 -40.06454 -37.29927 -36.62959 -35.66613 -34.41490 -33.59708 -32.25218 -31.44637 -29.39692 -28.06383 -27.63931 -25.58256 -24.56671 -23.74488 -22.60066 -21.96252 -21.66820 -20.86784 -19.26268 -18.58571 -18.30249 -17.41751 -17.29290 -16.56667 -16.16902 -15.93649 -15.68313 -15.63162 -15.53297 -15.18845 -14.61910 -14.49757 -14.33553 -14.06198 -13.84183 -13.54846 -13.42269 -13.30655 -12.95174 -12.76703 -12.68862 -12.59520 -12.50506 -12.41537 -12.30058 -11.93430 -11.76063 -11.53318 -11.43636 -11.41354 -11.25873 -11.09926 -10.54343 -10.52486 -10.15177 -10.04808 -9.76396 -8.19360 -6.29387 0.61759 0.90801 1.36310 1.40360 1.41503 1.52000 1.55075 1.68321 2.41484 2.63236 3.14214 3.32574 3.59759 3.67918 3.71891 3.82869 3.91564 4.06621 4.10773 4.20447 4.23229 4.30856 4.34437 4.35331 4.48374 4.51791 4.56904 4.63977 4.65745 4.76577 4.84070 4.93878 5.00035 5.01207 5.03134 5.06683 5.09618 5.13834 5.16969 5.47171 5.51894 5.60409 5.63017 5.69672 5.73754 5.75292 5.85682 5.96250 6.18341 6.25945 6.86308 7.39302 7.62401 8.92110 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019757 B = 0.002670 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.876958 B =10484.857619 C =10834.346944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.200 4.200 3 C 0.135 3.865 4 N -0.454 5.454 5 C 0.201 3.799 6 C -0.024 4.024 7 C -0.084 4.084 8 C 0.028 3.972 9 C -0.543 4.543 10 H 0.054 0.946 11 C 0.003 3.997 12 N -0.929 5.929 13 Si 0.960 3.040 14 H -0.276 1.276 15 H -0.280 1.280 16 H -0.265 1.265 17 N -0.328 5.328 18 N -0.348 5.348 19 C 0.345 3.655 20 N -0.450 5.450 21 C 0.070 3.930 22 C -0.071 4.071 23 C -0.139 4.139 24 C -0.186 4.186 25 C -0.070 4.070 26 C 0.075 3.925 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.041 0.959 36 H -0.004 1.004 37 H 0.006 0.994 38 H 0.264 0.736 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.854 3.499 14.768 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.219 4.219 3 C 0.014 3.986 4 N -0.145 5.145 5 C -0.068 4.068 6 C -0.064 4.064 7 C -0.123 4.123 8 C -0.009 4.009 9 C -0.581 4.581 10 H 0.073 0.927 11 C -0.195 4.195 12 N -0.569 5.569 13 Si 0.785 3.215 14 H -0.201 1.201 15 H -0.205 1.205 16 H -0.189 1.189 17 N -0.168 5.168 18 N -0.192 5.192 19 C -0.012 4.012 20 N -0.177 5.177 21 C -0.057 4.057 22 C -0.109 4.109 23 C -0.139 4.139 24 C -0.222 4.222 25 C -0.108 4.108 26 C -0.052 4.052 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.015 0.985 37 H 0.024 0.976 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.090 0.910 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -24.171 3.427 15.417 28.873 hybrid contribution 0.767 0.323 -1.059 1.347 sum -23.404 3.750 14.358 27.713 Atomic orbital electron populations 1.24132 0.94657 1.03740 0.94487 1.22920 0.97047 0.96814 1.05158 1.21213 0.91690 0.99032 0.86623 1.46540 1.10887 1.46250 1.10864 1.25136 0.82922 1.01312 0.97416 1.20149 0.98139 0.98147 0.89936 1.21342 0.98206 0.96365 0.96368 1.18975 0.94280 0.95316 0.92346 1.21641 1.30944 0.94195 1.11338 0.92739 1.25892 0.97144 0.97992 0.98460 1.70071 1.41091 1.19724 1.26043 0.85528 0.78878 0.79426 0.77714 1.20124 1.20489 1.18917 1.73969 1.23956 1.17805 1.01105 1.74465 0.98512 1.19300 1.26883 1.22507 0.93212 1.01713 0.83764 1.58649 1.17368 1.03748 1.37927 1.22192 0.98814 0.85308 0.99394 1.20868 0.92700 0.97747 0.99567 1.22000 0.99250 0.95739 0.96955 1.23803 1.00051 1.01684 0.96698 1.20868 0.94002 0.92749 1.03155 1.22145 0.96401 0.95999 0.90669 0.86417 0.86589 0.87701 0.86360 0.87734 0.88816 0.88271 0.92854 0.94011 0.98529 0.97565 0.92728 0.94351 0.91173 0.89163 0.88989 0.87394 0.87594 0.89061 0.88840 0.90979 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 14.32 67.78 0.97 -0.73 16 2 C -0.20 -3.62 9.85 25.65 0.25 -3.37 16 3 C 0.14 2.84 6.34 85.63 0.54 3.39 16 4 N -0.45 -12.89 2.79 -518.91 -1.45 -14.34 16 5 C 0.20 6.89 7.32 137.64 1.01 7.90 16 6 C -0.02 -0.82 5.41 29.85 0.16 -0.66 16 7 C -0.08 -3.45 5.13 30.59 0.16 -3.29 16 8 C 0.03 1.43 4.97 29.85 0.15 1.58 16 9 C -0.54 -30.74 9.11 25.60 0.23 -30.51 16 10 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 11 C 0.00 0.18 5.46 84.66 0.46 0.65 16 12 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 13 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 17 N -0.33 -12.96 12.18 -49.54 -0.60 -13.57 16 18 N -0.35 -12.73 12.19 -58.00 -0.71 -13.43 16 19 C 0.35 10.11 6.35 260.11 1.65 11.77 16 20 N -0.45 -9.78 4.59 -705.26 -3.23 -13.02 16 21 C 0.07 1.40 5.43 86.42 0.47 1.87 16 22 C -0.07 -0.95 6.21 30.18 0.19 -0.77 16 23 C -0.14 -1.79 5.41 -16.02 -0.09 -1.88 16 24 C -0.19 -2.00 14.01 67.78 0.95 -1.05 16 25 C -0.07 -0.88 6.21 30.18 0.19 -0.69 16 26 C 0.07 1.42 5.43 86.41 0.47 1.89 16 27 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 28 H 0.12 1.18 7.84 -2.91 -0.02 1.15 16 29 H 0.10 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.12 2.06 7.79 -2.38 -0.02 2.04 16 31 H 0.10 2.27 7.82 -2.39 -0.02 2.25 16 32 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.10 2.94 7.89 -2.39 -0.02 2.92 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.04 0.89 8.10 -2.39 -0.02 0.87 16 40 H 0.07 1.50 8.06 -2.39 -0.02 1.49 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 1.00 7.93 -2.38 -0.02 0.98 16 43 H 0.11 0.95 7.95 -2.91 -0.02 0.92 16 44 H 0.11 0.97 7.95 -2.91 -0.02 0.95 16 45 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.09 0.90 7.93 -2.39 -0.02 0.88 16 47 H 0.07 1.43 8.06 -2.39 -0.02 1.41 16 48 H 0.04 0.83 8.10 -2.39 -0.02 0.81 16 Total: -1.00 -70.70 397.43 4.99 -65.72 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.90 Total: 11.76 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 7.76 Total: -13.91 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -5.71 Total: -109.78 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.70 4.99 -65.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121689186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.481 kcal (2) G-P(sol) polarization free energy of solvation -70.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds