Wall clock time and date at job start Tue Mar 31 2020 11:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46902 * 203.40406 * 3 2 1 5 5 C 1.52994 * 109.47299 * 323.40678 * 3 2 1 6 6 N 1.46901 * 109.46931 * 83.40893 * 3 2 1 7 7 C 1.46898 * 110.99978 * 56.04680 * 6 3 2 8 8 C 1.38589 * 110.99571 * 180.02562 * 6 3 2 9 9 N 1.31220 * 126.47426 * 339.25242 * 8 6 3 10 10 N 1.28526 * 109.85824 * 180.02562 * 9 8 6 11 11 C 1.30298 * 110.05539 * 359.72214 * 10 9 8 12 12 C 1.50701 * 126.34811 * 180.31204 * 11 10 9 13 13 C 1.53000 * 109.47099 * 272.67834 * 12 11 10 14 14 C 1.52996 * 109.47080 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46977 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00326 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99513 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00515 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99508 * 180.02562 * 17 15 14 20 20 H 1.48489 * 109.47395 * 89.99759 * 19 17 15 21 21 H 1.48500 * 109.46720 * 210.00272 * 19 17 15 22 22 H 1.48501 * 109.46921 * 329.99332 * 19 17 15 23 23 N 1.36455 * 126.47116 * 159.30253 * 8 6 3 24 24 C 1.46502 * 127.13425 * 359.96072 * 23 8 6 25 25 C 1.50700 * 109.46901 * 274.85518 * 24 23 8 26 26 C 1.30998 * 119.99672 * 94.32210 * 25 24 23 27 27 C 1.50699 * 119.99964 * 274.31484 * 25 24 23 28 28 H 4.18735 * 15.04058 * 359.97438 * 4 2 1 29 29 H 1.09007 * 109.47464 * 180.02562 * 5 3 2 30 30 H 1.09005 * 109.47491 * 299.99791 * 5 3 2 31 31 H 1.09002 * 109.47366 * 60.00011 * 5 3 2 32 32 H 1.09000 * 109.46396 * 177.07381 * 7 6 3 33 33 H 1.08996 * 109.46910 * 297.06910 * 7 6 3 34 34 H 1.08994 * 109.47292 * 57.08230 * 7 6 3 35 35 H 1.08997 * 109.47211 * 32.68107 * 12 11 10 36 36 H 1.09004 * 109.46937 * 152.68159 * 12 11 10 37 37 H 1.09006 * 109.46839 * 299.99885 * 13 12 11 38 38 H 1.08995 * 109.47179 * 59.99526 * 13 12 11 39 39 H 1.08997 * 109.47135 * 300.00216 * 14 13 12 40 40 H 1.09007 * 109.47219 * 59.99801 * 14 13 12 41 41 H 0.96997 * 119.99853 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47032 * 154.86071 * 24 23 8 43 43 H 1.08996 * 109.47398 * 34.86058 * 24 23 8 44 44 H 1.08002 * 119.99623 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.00299 * 359.71545 * 26 25 24 46 46 H 1.09004 * 109.47411 * 272.60021 * 27 25 24 47 47 H 1.08998 * 109.47035 * 32.60515 * 27 25 24 48 48 H 1.09004 * 109.46612 * 152.60325 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9440 0.4082 5 6 3.1566 -1.1572 0.8599 6 7 3.1357 -0.1581 -1.3759 7 6 2.5885 0.8854 -2.2531 8 6 4.5211 -0.1623 -1.4125 9 7 5.3271 0.3198 -0.4960 10 7 6.5491 0.1478 -0.8552 11 6 6.5950 -0.4545 -2.0097 12 6 7.8395 -0.8413 -2.7665 13 6 8.2902 0.3312 -3.6401 14 6 9.5532 -0.0617 -4.4089 15 6 9.9968 1.0929 -5.2698 16 1 9.4344 2.0149 -5.2684 17 6 11.1214 0.9725 -6.0585 18 7 11.8066 -0.1500 -6.0599 19 14 11.6716 2.4040 -7.1252 20 1 12.6065 3.2638 -6.3560 21 1 12.3584 1.8844 -8.3349 22 1 10.4871 3.2016 -7.5327 23 7 5.3046 -0.6676 -2.4088 24 6 4.8564 -1.3112 -3.6462 25 6 4.6023 -2.7740 -3.3880 26 6 3.3952 -3.1865 -3.0900 27 6 5.7369 -3.7623 -3.4727 28 1 -1.0500 -0.0007 -0.0008 29 1 4.2466 -1.1565 0.8603 30 1 2.7932 -1.0394 1.8808 31 1 2.7937 -2.1005 0.4517 32 1 3.0075 0.7756 -3.2533 33 1 1.5040 0.7881 -2.3007 34 1 2.8484 1.8668 -1.8562 35 1 8.6305 -1.0934 -2.0604 36 1 7.6273 -1.7042 -3.3978 37 1 7.4990 0.5832 -4.3463 38 1 8.5022 1.1941 -3.0089 39 1 10.3445 -0.3141 -3.7031 40 1 9.3407 -0.9246 -5.0402 41 1 12.5975 -0.2348 -6.6151 42 1 5.6265 -1.2056 -4.4103 43 1 3.9366 -0.8377 -3.9895 44 1 3.2132 -4.2348 -2.9046 45 1 2.5830 -2.4777 -3.0249 46 1 5.8419 -4.1077 -4.5013 47 1 6.6619 -3.2816 -3.1546 48 1 5.5273 -4.6125 -2.8236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122542738.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:07 Heat of formation + Delta-G solvation = 151.163120 kcal Electronic energy + Delta-G solvation = -26761.275969 eV Core-core repulsion = 23240.922586 eV Total energy + Delta-G solvation = -3520.353382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.93758 -38.56858 -36.99495 -34.89975 -33.77100 -33.19406 -32.30612 -30.79435 -29.81242 -27.86107 -27.22581 -26.86773 -25.51044 -24.15759 -23.71117 -21.06438 -20.94074 -20.17279 -18.91634 -18.19185 -17.22379 -16.68289 -16.29066 -16.06755 -15.36833 -15.19607 -14.80405 -14.52146 -14.49808 -14.07058 -13.76018 -13.69983 -13.27502 -13.02642 -12.62573 -12.48618 -12.24162 -12.12560 -12.00646 -11.84663 -11.79378 -11.64850 -11.40332 -11.36652 -11.01949 -10.87577 -10.76677 -10.61424 -10.55084 -10.38702 -10.03259 -9.77245 -9.61801 -9.40542 -9.34128 -9.12302 -8.37162 -8.29660 -6.02455 -4.04620 1.64186 1.86526 2.18074 2.52993 2.77274 2.98719 3.31076 3.37411 3.40436 3.64144 3.99543 4.39731 4.43836 4.48784 4.54633 4.72180 4.87204 4.97248 5.04059 5.05653 5.16620 5.22640 5.33600 5.33818 5.38946 5.45566 5.51944 5.56892 5.65181 5.67113 5.77507 5.82424 5.84612 5.89417 6.00160 6.03345 6.13584 6.33588 6.40175 6.57041 6.60886 6.64252 6.74952 7.01870 7.17948 7.28201 7.63015 7.76104 7.96766 8.39268 8.91710 9.01858 9.59638 11.08774 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018255 B = 0.002959 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.425506 B = 9459.380673 C = 9972.545371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.208 3.792 4 H 0.085 0.915 5 C -0.142 4.142 6 N -0.452 5.452 7 C 0.024 3.976 8 C 0.341 3.659 9 N -0.318 5.318 10 N -0.289 5.289 11 C 0.207 3.793 12 C -0.039 4.039 13 C -0.102 4.102 14 C 0.023 3.977 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.464 5.464 24 C 0.144 3.856 25 C -0.152 4.152 26 C -0.153 4.153 27 C -0.123 4.123 28 H 0.219 0.781 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.017 0.983 41 H 0.261 0.739 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.887 -5.755 7.938 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.102 3.898 4 H 0.103 0.897 5 C -0.199 4.199 6 N -0.177 5.177 7 C -0.123 4.123 8 C -0.015 4.015 9 N -0.163 5.163 10 N -0.128 5.128 11 C -0.060 4.060 12 C -0.078 4.078 13 C -0.141 4.141 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.157 5.157 24 C 0.022 3.978 25 C -0.153 4.153 26 C -0.191 4.191 27 C -0.180 4.180 28 H 0.236 0.764 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.421 -5.609 8.945 24.783 hybrid contribution -0.183 0.815 -1.645 1.845 sum -22.604 -4.794 7.301 24.232 Atomic orbital electron populations 1.24883 0.95720 1.01198 0.98917 1.22588 0.93598 1.00196 1.01218 1.18398 0.84101 1.01001 0.86307 0.89687 1.21836 1.02906 0.96694 0.98484 1.58693 1.00214 1.47699 1.11050 1.22550 1.01232 0.92100 0.96418 1.22127 0.90020 1.00388 0.88970 1.74545 0.96674 1.20891 1.24171 1.74030 1.11729 1.16761 1.10265 1.25277 0.85800 1.00553 0.94353 1.20436 0.89190 1.00415 0.97782 1.21655 0.99985 0.95486 0.96975 1.19096 0.90872 0.96827 0.94597 1.21213 1.10385 0.99680 1.24580 0.92763 1.25005 0.96553 0.95756 0.97039 1.69953 1.17953 1.25195 1.40309 0.86613 0.78829 0.82659 0.80029 1.20602 1.21227 1.19943 1.46270 1.06434 1.45056 1.17975 1.20875 1.02442 0.90393 0.84074 1.21791 0.96586 0.94317 1.02556 1.23856 0.96395 1.01344 0.97489 1.20936 0.96950 0.97575 1.02495 0.76373 0.90338 0.91373 0.91933 0.90944 0.89556 0.93725 0.88443 0.90255 0.93662 0.92377 0.96158 0.96502 0.92976 0.87444 0.88534 0.88146 0.87731 0.90854 0.91243 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 19.25 29.55 0.57 -0.89 16 2 C -0.18 -1.70 11.20 -37.12 -0.42 -2.11 16 3 C 0.21 2.29 2.20 -70.50 -0.16 2.14 16 4 H 0.09 1.01 7.91 -51.93 -0.41 0.60 16 5 C -0.14 -1.55 8.97 37.15 0.33 -1.22 16 6 N -0.45 -5.17 4.65 -177.99 -0.83 -5.99 16 7 C 0.02 0.24 9.09 60.06 0.55 0.78 16 8 C 0.34 4.86 6.03 -318.86 -1.92 2.94 16 9 N -0.32 -5.41 10.02 30.32 0.30 -5.11 16 10 N -0.29 -5.37 12.18 32.99 0.40 -4.97 16 11 C 0.21 3.42 7.32 -154.01 -1.13 2.30 16 12 C -0.04 -0.64 5.42 -27.88 -0.15 -0.79 16 13 C -0.10 -2.04 5.13 -26.73 -0.14 -2.17 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 N -0.46 -6.50 2.79 -115.36 -0.32 -6.82 16 24 C 0.14 1.61 6.08 -5.19 -0.03 1.58 16 25 C -0.15 -1.55 5.63 -101.07 -0.57 -2.12 16 26 C -0.15 -1.40 13.88 29.02 0.40 -1.00 16 27 C -0.12 -1.23 10.04 36.01 0.36 -0.87 16 28 H 0.22 0.90 7.80 -54.09 -0.42 0.48 16 29 H 0.08 1.04 6.24 -51.92 -0.32 0.72 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.67 6.61 -51.93 -0.34 0.33 16 33 H 0.09 0.70 7.11 -51.93 -0.37 0.33 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.08 1.16 5.66 -51.93 -0.29 0.87 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.11 1.21 7.59 -51.93 -0.39 0.81 16 43 H 0.10 0.92 6.47 -51.93 -0.34 0.59 16 44 H 0.10 0.81 8.02 -52.49 -0.42 0.39 16 45 H 0.10 0.95 8.00 -52.49 -0.42 0.53 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.78 6.11 -51.93 -0.32 0.46 16 48 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -32.14 398.44 -9.38 -41.52 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.81 Total: -1.22 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -2.85 Total: -14.24 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.29 Total: -48.53 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.14 -9.38 -41.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122542738.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.688 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds