Wall clock time and date at job start Tue Mar 31 2020 11:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46902 * 203.40406 * 3 2 1 5 5 C 1.52994 * 109.47299 * 323.40678 * 3 2 1 6 6 N 1.46901 * 109.46931 * 83.40893 * 3 2 1 7 7 C 1.46898 * 110.99978 * 56.04680 * 6 3 2 8 8 C 1.38589 * 110.99571 * 180.02562 * 6 3 2 9 9 N 1.31220 * 126.47426 * 339.25242 * 8 6 3 10 10 N 1.28526 * 109.85824 * 180.02562 * 9 8 6 11 11 C 1.30298 * 110.05539 * 359.72214 * 10 9 8 12 12 C 1.50701 * 126.34811 * 180.31204 * 11 10 9 13 13 C 1.53000 * 109.47099 * 272.67834 * 12 11 10 14 14 C 1.52996 * 109.47080 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46977 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00326 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99513 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00515 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99508 * 180.02562 * 17 15 14 20 20 H 1.48489 * 109.47395 * 89.99759 * 19 17 15 21 21 H 1.48500 * 109.46720 * 210.00272 * 19 17 15 22 22 H 1.48501 * 109.46921 * 329.99332 * 19 17 15 23 23 N 1.36455 * 126.47116 * 159.30253 * 8 6 3 24 24 C 1.46502 * 127.13425 * 359.96072 * 23 8 6 25 25 C 1.50700 * 109.46901 * 274.85518 * 24 23 8 26 26 C 1.30998 * 119.99672 * 94.32210 * 25 24 23 27 27 C 1.50699 * 119.99964 * 274.31484 * 25 24 23 28 28 H 4.18735 * 15.04058 * 359.97438 * 4 2 1 29 29 H 1.09007 * 109.47464 * 180.02562 * 5 3 2 30 30 H 1.09005 * 109.47491 * 299.99791 * 5 3 2 31 31 H 1.09002 * 109.47366 * 60.00011 * 5 3 2 32 32 H 1.09000 * 109.46396 * 177.07381 * 7 6 3 33 33 H 1.08996 * 109.46910 * 297.06910 * 7 6 3 34 34 H 1.08994 * 109.47292 * 57.08230 * 7 6 3 35 35 H 1.08997 * 109.47211 * 32.68107 * 12 11 10 36 36 H 1.09004 * 109.46937 * 152.68159 * 12 11 10 37 37 H 1.09006 * 109.46839 * 299.99885 * 13 12 11 38 38 H 1.08995 * 109.47179 * 59.99526 * 13 12 11 39 39 H 1.08997 * 109.47135 * 300.00216 * 14 13 12 40 40 H 1.09007 * 109.47219 * 59.99801 * 14 13 12 41 41 H 0.96997 * 119.99853 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47032 * 154.86071 * 24 23 8 43 43 H 1.08996 * 109.47398 * 34.86058 * 24 23 8 44 44 H 1.08002 * 119.99623 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.00299 * 359.71545 * 26 25 24 46 46 H 1.09004 * 109.47411 * 272.60021 * 27 25 24 47 47 H 1.08998 * 109.47035 * 32.60515 * 27 25 24 48 48 H 1.09004 * 109.46612 * 152.60325 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9440 0.4082 5 6 3.1566 -1.1572 0.8599 6 7 3.1357 -0.1581 -1.3759 7 6 2.5885 0.8854 -2.2531 8 6 4.5211 -0.1623 -1.4125 9 7 5.3271 0.3198 -0.4960 10 7 6.5491 0.1478 -0.8552 11 6 6.5950 -0.4545 -2.0097 12 6 7.8395 -0.8413 -2.7665 13 6 8.2902 0.3312 -3.6401 14 6 9.5532 -0.0617 -4.4089 15 6 9.9968 1.0929 -5.2698 16 1 9.4344 2.0149 -5.2684 17 6 11.1214 0.9725 -6.0585 18 7 11.8066 -0.1500 -6.0599 19 14 11.6716 2.4040 -7.1252 20 1 12.6065 3.2638 -6.3560 21 1 12.3584 1.8844 -8.3349 22 1 10.4871 3.2016 -7.5327 23 7 5.3046 -0.6676 -2.4088 24 6 4.8564 -1.3112 -3.6462 25 6 4.6023 -2.7740 -3.3880 26 6 3.3952 -3.1865 -3.0900 27 6 5.7369 -3.7623 -3.4727 28 1 -1.0500 -0.0007 -0.0008 29 1 4.2466 -1.1565 0.8603 30 1 2.7932 -1.0394 1.8808 31 1 2.7937 -2.1005 0.4517 32 1 3.0075 0.7756 -3.2533 33 1 1.5040 0.7881 -2.3007 34 1 2.8484 1.8668 -1.8562 35 1 8.6305 -1.0934 -2.0604 36 1 7.6273 -1.7042 -3.3978 37 1 7.4990 0.5832 -4.3463 38 1 8.5022 1.1941 -3.0089 39 1 10.3445 -0.3141 -3.7031 40 1 9.3407 -0.9246 -5.0402 41 1 12.5975 -0.2348 -6.6151 42 1 5.6265 -1.2056 -4.4103 43 1 3.9366 -0.8377 -3.9895 44 1 3.2132 -4.2348 -2.9046 45 1 2.5830 -2.4777 -3.0249 46 1 5.8419 -4.1077 -4.5013 47 1 6.6619 -3.2816 -3.1546 48 1 5.5273 -4.6125 -2.8236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122542738.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:06 Heat of formation + Delta-G solvation = 135.936683 kcal Electronic energy + Delta-G solvation = -26761.936236 eV Core-core repulsion = 23240.922586 eV Total energy + Delta-G solvation = -3521.013650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.12545 -39.48323 -37.92357 -36.57448 -34.66747 -34.60769 -33.76783 -31.59652 -31.31009 -29.04142 -28.34632 -27.90563 -26.48534 -25.51759 -25.03369 -22.58686 -21.98209 -21.68928 -19.79170 -18.91199 -18.51061 -18.09234 -17.68568 -17.14421 -16.55975 -16.27772 -16.07129 -15.73562 -15.60447 -15.38375 -14.99632 -14.57578 -14.33175 -14.06787 -13.89458 -13.80783 -13.44840 -13.34223 -13.08650 -12.94631 -12.78919 -12.72634 -12.70683 -12.57684 -12.52719 -12.40829 -12.28624 -11.83456 -11.62687 -11.48895 -11.39325 -11.24105 -11.21080 -11.07326 -10.53390 -10.50684 -10.17051 -9.46396 -8.18634 -6.28500 0.64415 0.82202 1.38213 1.40587 1.41727 1.52104 1.72766 1.88129 1.93749 2.41931 2.74547 3.14949 3.31423 3.35306 3.53392 3.67967 3.74253 3.85732 4.04298 4.14930 4.20623 4.22979 4.33137 4.37889 4.45920 4.48323 4.56355 4.64860 4.69095 4.74071 4.80092 4.83522 4.91098 4.94866 5.01078 5.07041 5.07434 5.11950 5.15526 5.19193 5.46557 5.51850 5.53793 5.59272 5.75140 5.81141 5.86793 6.11665 6.26883 6.64834 6.87184 7.40124 7.68429 8.92751 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018255 B = 0.002959 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.425506 B = 9459.380673 C = 9972.545371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.221 4.221 3 C 0.210 3.790 4 H 0.069 0.931 5 C -0.135 4.135 6 N -0.444 5.444 7 C 0.024 3.976 8 C 0.357 3.643 9 N -0.348 5.348 10 N -0.324 5.324 11 C 0.200 3.800 12 C -0.025 4.025 13 C -0.084 4.084 14 C 0.029 3.971 15 C -0.543 4.543 16 H 0.054 0.946 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.958 3.042 20 H -0.276 1.276 21 H -0.280 1.280 22 H -0.265 1.265 23 N -0.459 5.459 24 C 0.139 3.861 25 C -0.168 4.168 26 C -0.137 4.137 27 C -0.122 4.122 28 H 0.255 0.745 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.035 0.965 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.042 0.958 39 H -0.004 1.004 40 H 0.006 0.994 41 H 0.264 0.736 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.797 -5.757 7.143 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.221 4.221 3 C 0.104 3.896 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.169 5.169 7 C -0.122 4.122 8 C 0.000 4.000 9 N -0.192 5.192 10 N -0.163 5.163 11 C -0.069 4.069 12 C -0.065 4.065 13 C -0.123 4.123 14 C -0.009 4.009 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.783 3.217 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.189 1.189 23 N -0.152 5.152 24 C 0.018 3.982 25 C -0.169 4.169 26 C -0.175 4.175 27 C -0.179 4.179 28 H 0.271 0.729 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.054 0.946 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.014 0.986 40 H 0.024 0.976 41 H 0.073 0.927 42 H 0.123 0.877 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.127 0.873 46 H 0.099 0.901 47 H 0.071 0.929 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.351 -5.611 8.147 27.213 hybrid contribution 0.570 0.774 -1.361 1.666 sum -24.782 -4.837 6.786 26.145 Atomic orbital electron populations 1.25709 0.96325 0.98556 0.96272 1.22412 0.93459 1.02611 1.03658 1.18256 0.85540 1.00049 0.85748 0.91355 1.21757 1.01016 0.96988 0.99505 1.58893 0.98184 1.48056 1.11791 1.22634 1.02473 0.91043 0.96096 1.22416 0.91040 0.98531 0.88040 1.74474 0.96534 1.22573 1.25616 1.73940 1.12974 1.17873 1.11510 1.25009 0.86628 1.01040 0.94208 1.20193 0.89403 0.99500 0.97391 1.21345 0.97998 0.96159 0.96773 1.18969 0.92211 0.95691 0.93986 1.21640 1.10781 1.00474 1.25160 0.92781 1.25875 0.96645 0.98469 0.98424 1.70067 1.18450 1.27166 1.41212 0.85547 0.78575 0.79307 0.78234 1.20150 1.20515 1.18940 1.46395 1.05480 1.44653 1.18630 1.21139 1.03135 0.91192 0.82755 1.21751 0.97156 0.93660 1.04312 1.24008 0.95891 1.02196 0.95376 1.20925 0.96152 0.97672 1.03126 0.72895 0.93076 0.90102 0.91650 0.90344 0.87382 0.94633 0.88916 0.88348 0.92955 0.93956 0.98553 0.97568 0.92739 0.87655 0.86626 0.86797 0.87276 0.90084 0.92942 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 19.25 74.32 1.43 -0.34 16 2 C -0.22 -3.78 11.20 31.12 0.35 -3.43 16 3 C 0.21 4.49 2.20 43.11 0.09 4.58 16 4 H 0.07 1.66 7.91 -2.39 -0.02 1.64 16 5 C -0.14 -2.92 8.97 71.98 0.65 -2.28 16 6 N -0.44 -9.66 4.65 -717.03 -3.33 -12.99 16 7 C 0.02 0.43 9.09 127.69 1.16 1.59 16 8 C 0.36 10.11 6.03 260.11 1.57 11.68 16 9 N -0.35 -12.16 10.02 -58.00 -0.58 -12.74 16 10 N -0.32 -12.44 12.18 -49.54 -0.60 -13.04 16 11 C 0.20 6.71 7.32 137.64 1.01 7.72 16 12 C -0.03 -0.85 5.42 29.85 0.16 -0.69 16 13 C -0.08 -3.42 5.13 30.59 0.16 -3.26 16 14 C 0.03 1.45 4.97 29.85 0.15 1.60 16 15 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 16 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 17 C 0.00 0.23 5.46 84.66 0.46 0.69 16 18 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 19 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 N -0.46 -12.68 2.79 -518.89 -1.45 -14.13 16 24 C 0.14 2.91 6.08 85.63 0.52 3.43 16 25 C -0.17 -3.17 5.63 -16.49 -0.09 -3.26 16 26 C -0.14 -2.17 13.88 67.78 0.94 -1.22 16 27 C -0.12 -2.32 10.04 71.24 0.72 -1.60 16 28 H 0.25 0.80 7.80 -4.42 -0.03 0.77 16 29 H 0.05 1.39 6.24 -2.38 -0.01 1.38 16 30 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.29 6.61 -2.39 -0.02 1.27 16 33 H 0.11 1.45 7.11 -2.39 -0.02 1.44 16 34 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.10 2.91 5.66 -2.39 -0.01 2.90 16 37 H 0.05 2.03 8.14 -2.38 -0.02 2.02 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 41 H 0.26 14.82 8.31 -92.71 -0.77 14.04 16 42 H 0.11 2.26 7.59 -2.39 -0.02 2.25 16 43 H 0.12 1.95 6.47 -2.39 -0.02 1.94 16 44 H 0.11 1.51 8.02 -2.91 -0.02 1.49 16 45 H 0.11 1.65 8.00 -2.91 -0.02 1.62 16 46 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.05 1.16 6.11 -2.39 -0.01 1.15 16 48 H 0.07 1.22 8.02 -2.39 -0.02 1.20 16 Total: -1.00 -70.46 398.44 6.77 -63.69 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.92 Total: 13.45 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 9.50 Total: -15.14 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -5.68 Total: -108.09 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -70.46 6.77 -63.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122542738.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.623 kcal (2) G-P(sol) polarization free energy of solvation -70.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds