Wall clock time and date at job start Tue Mar 31 2020 11:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99928 * 2 1 4 4 N 1.46899 * 109.47212 * 124.99841 * 3 2 1 5 5 C 1.38589 * 110.99795 * 164.23924 * 4 3 2 6 6 N 1.31220 * 126.47076 * 71.37222 * 5 4 3 7 7 N 1.28527 * 109.85506 * 180.25785 * 6 5 4 8 8 C 1.30298 * 110.05651 * 359.74358 * 7 6 5 9 9 C 1.50700 * 126.34626 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47017 * 270.03848 * 9 8 7 11 11 C 1.50701 * 109.46845 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99967 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99541 * 179.97438 * 11 10 9 14 14 N 1.31506 * 119.99725 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00221 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47421 * 89.99459 * 15 13 11 17 17 H 1.48499 * 109.46954 * 209.99884 * 15 13 11 18 18 H 1.48501 * 109.46756 * 329.99418 * 15 13 11 19 19 N 1.36449 * 126.47140 * 251.19643 * 5 4 3 20 20 C 1.46498 * 127.13627 * 0.02562 * 19 5 4 21 21 C 1.50701 * 109.46994 * 275.11730 * 20 19 5 22 22 C 1.31000 * 120.00069 * 95.00391 * 21 20 19 23 23 C 1.50700 * 119.99900 * 275.00115 * 21 20 19 24 24 C 1.46893 * 110.99998 * 288.19043 * 4 3 2 25 25 C 1.53005 * 117.50340 * 232.65239 * 24 4 3 26 26 C 1.52997 * 59.99868 * 252.51273 * 25 24 4 27 27 H 1.07997 * 119.99619 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00172 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00576 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47025 * 4.99215 * 3 2 1 31 31 H 1.09008 * 109.46805 * 244.99899 * 3 2 1 32 32 H 1.08993 * 109.47149 * 30.04338 * 9 8 7 33 33 H 1.09006 * 109.46609 * 150.04297 * 9 8 7 34 34 H 1.09005 * 109.46925 * 300.00398 * 10 9 8 35 35 H 1.08998 * 109.46791 * 59.99904 * 10 9 8 36 36 H 0.97004 * 120.00386 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.47247 * 155.12072 * 20 19 5 38 38 H 1.08998 * 109.47438 * 35.11772 * 20 19 5 39 39 H 1.07999 * 120.00036 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.99943 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47564 * 359.97438 * 23 21 20 42 42 H 1.09000 * 109.47473 * 120.00210 * 23 21 20 43 43 H 1.09002 * 109.47165 * 239.99771 * 23 21 20 44 44 H 1.09002 * 115.55420 * 18.36321 * 24 4 3 45 45 H 1.08999 * 117.49265 * 0.02562 * 25 24 4 46 46 H 1.08997 * 117.49641 * 145.02226 * 25 24 4 47 47 H 1.09004 * 117.49540 * 252.50444 * 26 25 24 48 48 H 1.09001 * 117.50289 * 107.48877 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3321 1.1345 5 6 3.9417 2.3330 0.9765 6 7 3.7332 3.6250 1.0717 7 7 4.8302 4.2609 0.8618 8 6 5.7968 3.4191 0.6275 9 6 7.2335 3.7677 0.3350 10 6 7.4204 3.9358 -1.1743 11 6 8.8572 4.2838 -1.4668 12 1 9.5661 4.3755 -0.6573 13 6 9.2667 4.4841 -2.7680 14 7 10.5204 4.7882 -3.0233 15 14 8.0405 4.3247 -4.1682 16 1 7.4094 5.6439 -4.4260 17 1 8.7442 3.8649 -5.3924 18 1 6.9934 3.3386 -3.7993 19 7 5.2659 2.1609 0.6957 20 6 5.9711 0.8916 0.5012 21 6 6.3915 0.3404 1.8393 22 6 5.6347 -0.5340 2.4546 23 6 7.6827 0.7951 2.4695 24 6 2.2753 1.4848 2.4052 25 6 2.7182 2.6144 3.3374 26 6 3.0361 1.1606 3.6925 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1316 0.0894 31 1 2.6213 1.4026 -0.9315 32 1 7.4912 4.6992 0.8390 33 1 7.8817 2.9686 0.6946 34 1 7.1626 3.0042 -1.6782 35 1 6.7721 4.7348 -1.5339 36 1 10.8086 4.9295 -3.9387 37 1 6.8534 1.0572 -0.1170 38 1 5.3094 0.1803 0.0070 39 1 4.7091 -0.8596 2.0032 40 1 5.9362 -0.9293 3.4134 41 1 8.1715 1.5175 1.8158 42 1 7.4729 1.2601 3.4328 43 1 8.3379 -0.0637 2.6157 44 1 1.2126 1.2446 2.3747 45 1 3.5442 3.2444 3.0075 46 1 1.9466 3.1176 3.9202 47 1 2.4737 0.7074 4.5089 48 1 4.0715 0.8338 3.5964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122554843.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:02 Heat of formation + Delta-G solvation = 159.715699 kcal Electronic energy + Delta-G solvation = -27542.303444 eV Core-core repulsion = 24022.320929 eV Total energy + Delta-G solvation = -3519.982514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.85827 -38.88324 -36.86930 -35.37319 -34.32561 -33.41532 -32.72952 -31.65688 -28.88941 -27.57764 -26.95944 -25.85180 -25.29745 -22.75936 -22.46052 -21.51645 -20.45181 -20.25703 -19.73681 -18.69391 -17.28192 -17.05218 -16.62443 -16.10227 -15.45712 -15.18869 -14.75923 -14.39481 -14.28663 -14.20155 -13.64509 -13.48626 -13.41224 -13.22140 -12.84318 -12.70022 -12.53940 -12.04386 -12.01562 -11.79553 -11.55062 -11.50864 -11.37974 -11.22445 -11.10930 -11.04833 -10.48939 -10.35086 -10.34125 -9.99476 -9.87844 -9.84467 -9.70658 -9.32432 -9.29326 -8.79096 -8.61302 -8.39897 -6.12211 -4.11792 1.72831 1.80822 2.07758 2.68036 3.11562 3.27223 3.34588 3.37462 3.55487 3.91956 4.38809 4.47566 4.58439 4.60477 4.74603 4.83549 4.86039 4.91754 4.95340 5.08826 5.18838 5.21563 5.32675 5.40006 5.41482 5.46095 5.52452 5.58556 5.61566 5.64822 5.74111 5.76734 5.91563 5.98162 6.15832 6.17910 6.21916 6.25289 6.30353 6.34870 6.40572 6.48935 6.67052 6.71392 6.82589 7.10105 7.23278 7.36314 7.66366 8.41715 8.90868 9.03480 9.49523 11.00641 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.004134 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.526255 B = 6771.336379 C = 7479.811546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.140 4.140 3 C 0.092 3.908 4 N -0.427 5.427 5 C 0.323 3.677 6 N -0.304 5.304 7 N -0.299 5.299 8 C 0.213 3.787 9 C -0.025 4.025 10 C -0.004 4.004 11 C -0.523 4.523 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.877 3.123 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.268 1.268 19 N -0.457 5.457 20 C 0.145 3.855 21 C -0.147 4.147 22 C -0.160 4.160 23 C -0.124 4.124 24 C 0.029 3.971 25 C -0.193 4.193 26 C -0.176 4.176 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.013 0.987 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.177 -14.102 11.141 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.159 4.159 3 C -0.034 4.034 4 N -0.151 5.151 5 C -0.033 4.033 6 N -0.148 5.148 7 N -0.138 5.138 8 C -0.054 4.054 9 C -0.065 4.065 10 C -0.042 4.042 11 C -0.561 4.561 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.704 3.296 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.193 1.193 19 N -0.149 5.149 20 C 0.022 3.978 21 C -0.148 4.148 22 C -0.198 4.198 23 C -0.180 4.180 24 C -0.080 4.080 25 C -0.231 4.231 26 C -0.214 4.214 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.031 0.969 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.508 -13.205 11.168 23.909 hybrid contribution -0.336 -0.714 -1.072 1.332 sum -16.845 -13.920 10.096 24.071 Atomic orbital electron populations 1.23902 0.95789 1.02075 1.00686 1.22809 0.95499 0.98035 0.99558 1.21291 0.93963 0.95781 0.92400 1.58358 1.13623 1.40274 1.02805 1.22073 0.84438 0.90654 1.06104 1.74596 1.19760 1.01137 1.19295 1.74092 0.95130 1.25839 1.18783 1.25624 0.99794 0.79342 1.00655 1.20307 0.82593 1.02659 1.00914 1.19551 0.98455 0.96827 0.89408 1.20995 0.92781 1.48258 0.94061 0.90568 1.24950 0.94974 0.94324 0.98710 1.69892 1.15664 1.47832 1.20290 0.86828 0.81668 0.79117 0.81973 1.20044 1.21270 1.19333 1.46389 1.07675 1.08183 1.52635 1.20894 0.98135 0.82760 0.95972 1.21836 0.97841 0.98799 0.96281 1.23834 0.98694 0.97638 0.99622 1.20936 0.94434 1.01827 1.00844 1.22471 0.96477 1.04705 0.84321 1.23761 1.04800 0.91709 1.02839 1.23269 1.01986 0.98908 0.97273 0.88075 0.88528 0.86662 0.92266 0.89789 0.88683 0.90430 0.96910 0.96087 0.92571 0.87398 0.88346 0.87471 0.88200 0.90973 0.91710 0.91173 0.85932 0.86897 0.88840 0.88648 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 14.32 29.01 0.42 -0.96 16 2 C -0.14 -1.21 9.05 -36.02 -0.33 -1.53 16 3 C 0.09 1.03 5.29 -4.97 -0.03 1.00 16 4 N -0.43 -5.22 4.66 -168.30 -0.78 -6.00 16 5 C 0.32 5.02 5.36 -318.86 -1.71 3.31 16 6 N -0.30 -5.59 9.62 30.32 0.29 -5.29 16 7 N -0.30 -6.05 12.18 32.99 0.40 -5.65 16 8 C 0.21 3.95 7.32 -154.01 -1.13 2.82 16 9 C -0.03 -0.48 5.31 -27.88 -0.15 -0.63 16 10 C 0.00 -0.09 4.02 -27.88 -0.11 -0.20 16 11 C -0.52 -14.23 9.66 -34.44 -0.33 -14.56 16 12 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 15 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 19 N -0.46 -7.18 2.79 -115.36 -0.32 -7.50 16 20 C 0.14 1.86 6.04 -5.19 -0.03 1.83 16 21 C -0.15 -1.64 5.63 -101.07 -0.57 -2.21 16 22 C -0.16 -1.54 11.70 29.01 0.34 -1.20 16 23 C -0.12 -1.36 10.05 36.01 0.36 -1.00 16 24 C 0.03 0.32 5.70 -67.71 -0.39 -0.07 16 25 C -0.19 -2.42 9.18 -26.73 -0.25 -2.67 16 26 C -0.18 -1.86 10.33 -26.73 -0.28 -2.13 16 27 H 0.10 0.61 8.06 -52.49 -0.42 0.18 16 28 H 0.10 0.70 7.84 -52.49 -0.41 0.28 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 30 H 0.06 0.69 7.71 -51.93 -0.40 0.29 16 31 H 0.08 1.03 7.97 -51.92 -0.41 0.62 16 32 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.08 1.35 5.72 -51.93 -0.30 1.05 16 34 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.11 1.45 7.60 -51.93 -0.39 1.06 16 38 H 0.10 1.13 7.99 -51.93 -0.41 0.72 16 39 H 0.11 1.02 7.99 -52.49 -0.42 0.60 16 40 H 0.10 0.84 8.05 -52.49 -0.42 0.42 16 41 H 0.07 0.89 5.95 -51.93 -0.31 0.58 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.12 1.18 7.58 -51.93 -0.39 0.79 16 45 H 0.11 1.82 5.26 -51.93 -0.27 1.55 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.10 1.14 5.72 -51.93 -0.30 0.84 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -31.21 389.15 -10.48 -41.68 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.76 Total: 2.45 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -4.27 Total: -16.25 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.36 Total: -50.62 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.21 -10.48 -41.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122554843.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.400 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds