Wall clock time and date at job start Tue Mar 31 2020 11:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99928 * 2 1 4 4 N 1.46899 * 109.47212 * 124.99841 * 3 2 1 5 5 C 1.38589 * 110.99795 * 164.23924 * 4 3 2 6 6 N 1.31220 * 126.47076 * 71.37222 * 5 4 3 7 7 N 1.28527 * 109.85506 * 180.25785 * 6 5 4 8 8 C 1.30298 * 110.05651 * 359.74358 * 7 6 5 9 9 C 1.50700 * 126.34626 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47017 * 270.03848 * 9 8 7 11 11 C 1.50701 * 109.46845 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99967 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99541 * 179.97438 * 11 10 9 14 14 N 1.31506 * 119.99725 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00221 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47421 * 89.99459 * 15 13 11 17 17 H 1.48499 * 109.46954 * 209.99884 * 15 13 11 18 18 H 1.48501 * 109.46756 * 329.99418 * 15 13 11 19 19 N 1.36449 * 126.47140 * 251.19643 * 5 4 3 20 20 C 1.46498 * 127.13627 * 0.02562 * 19 5 4 21 21 C 1.50701 * 109.46994 * 275.11730 * 20 19 5 22 22 C 1.31000 * 120.00069 * 95.00391 * 21 20 19 23 23 C 1.50700 * 119.99900 * 275.00115 * 21 20 19 24 24 C 1.46893 * 110.99998 * 288.19043 * 4 3 2 25 25 C 1.53005 * 117.50340 * 232.65239 * 24 4 3 26 26 C 1.52997 * 59.99868 * 252.51273 * 25 24 4 27 27 H 1.07997 * 119.99619 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00172 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00576 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47025 * 4.99215 * 3 2 1 31 31 H 1.09008 * 109.46805 * 244.99899 * 3 2 1 32 32 H 1.08993 * 109.47149 * 30.04338 * 9 8 7 33 33 H 1.09006 * 109.46609 * 150.04297 * 9 8 7 34 34 H 1.09005 * 109.46925 * 300.00398 * 10 9 8 35 35 H 1.08998 * 109.46791 * 59.99904 * 10 9 8 36 36 H 0.97004 * 120.00386 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.47247 * 155.12072 * 20 19 5 38 38 H 1.08998 * 109.47438 * 35.11772 * 20 19 5 39 39 H 1.07999 * 120.00036 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.99943 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47564 * 359.97438 * 23 21 20 42 42 H 1.09000 * 109.47473 * 120.00210 * 23 21 20 43 43 H 1.09002 * 109.47165 * 239.99771 * 23 21 20 44 44 H 1.09002 * 115.55420 * 18.36321 * 24 4 3 45 45 H 1.08999 * 117.49265 * 0.02562 * 25 24 4 46 46 H 1.08997 * 117.49641 * 145.02226 * 25 24 4 47 47 H 1.09004 * 117.49540 * 252.50444 * 26 25 24 48 48 H 1.09001 * 117.50289 * 107.48877 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3321 1.1345 5 6 3.9417 2.3330 0.9765 6 7 3.7332 3.6250 1.0717 7 7 4.8302 4.2609 0.8618 8 6 5.7968 3.4191 0.6275 9 6 7.2335 3.7677 0.3350 10 6 7.4204 3.9358 -1.1743 11 6 8.8572 4.2838 -1.4668 12 1 9.5661 4.3755 -0.6573 13 6 9.2667 4.4841 -2.7680 14 7 10.5204 4.7882 -3.0233 15 14 8.0405 4.3247 -4.1682 16 1 7.4094 5.6439 -4.4260 17 1 8.7442 3.8649 -5.3924 18 1 6.9934 3.3386 -3.7993 19 7 5.2659 2.1609 0.6957 20 6 5.9711 0.8916 0.5012 21 6 6.3915 0.3404 1.8393 22 6 5.6347 -0.5340 2.4546 23 6 7.6827 0.7951 2.4695 24 6 2.2753 1.4848 2.4052 25 6 2.7182 2.6144 3.3374 26 6 3.0361 1.1606 3.6925 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1316 0.0894 31 1 2.6213 1.4026 -0.9315 32 1 7.4912 4.6992 0.8390 33 1 7.8817 2.9686 0.6946 34 1 7.1626 3.0042 -1.6782 35 1 6.7721 4.7348 -1.5339 36 1 10.8086 4.9295 -3.9387 37 1 6.8534 1.0572 -0.1170 38 1 5.3094 0.1803 0.0070 39 1 4.7091 -0.8596 2.0032 40 1 5.9362 -0.9293 3.4134 41 1 8.1715 1.5175 1.8158 42 1 7.4729 1.2601 3.4328 43 1 8.3379 -0.0637 2.6157 44 1 1.2126 1.2446 2.3747 45 1 3.5442 3.2444 3.0075 46 1 1.9466 3.1176 3.9202 47 1 2.4737 0.7074 4.5089 48 1 4.0715 0.8338 3.5964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122554843.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:02 Heat of formation + Delta-G solvation = 144.616475 kcal Electronic energy + Delta-G solvation = -27542.958195 eV Core-core repulsion = 24022.320929 eV Total energy + Delta-G solvation = -3520.637266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.16595 -39.86107 -37.88976 -36.19646 -36.09398 -34.49513 -34.18895 -33.15610 -30.40401 -28.54904 -27.93458 -27.37330 -26.40486 -23.83301 -23.63010 -23.04916 -21.73494 -21.31711 -20.63723 -19.67582 -19.00651 -18.31106 -17.84013 -17.23245 -16.62835 -16.22808 -15.97299 -15.73172 -15.45714 -15.11886 -15.06857 -14.89728 -14.71548 -14.43294 -14.11830 -13.80903 -13.54943 -13.35336 -13.09681 -12.97057 -12.95758 -12.64213 -12.51510 -12.42485 -12.28410 -12.07708 -12.00654 -11.88204 -11.82410 -11.45199 -11.40165 -11.31094 -10.99670 -10.79795 -10.39238 -10.15528 -10.00096 -9.58023 -8.31923 -6.35785 0.63424 0.81181 1.26630 1.31505 1.33924 1.43096 1.66078 1.74533 2.31678 2.56062 3.00661 3.03415 3.38495 3.58443 3.61171 3.70219 3.92965 3.94868 3.99872 4.08783 4.13439 4.18199 4.33630 4.40349 4.44670 4.50574 4.58432 4.62775 4.69913 4.72857 4.75179 4.78891 4.80332 4.98392 5.00823 5.03772 5.09556 5.09936 5.23624 5.27001 5.38484 5.46735 5.59001 5.59672 5.61440 5.71071 5.82455 5.91877 6.18689 6.22586 6.70901 7.28773 7.67158 8.84069 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.004134 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.526255 B = 6771.336379 C = 7479.811546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.150 4.150 3 C 0.093 3.907 4 N -0.419 5.419 5 C 0.342 3.658 6 N -0.331 5.331 7 N -0.331 5.331 8 C 0.200 3.800 9 C -0.012 4.012 10 C 0.006 3.994 11 C -0.526 4.526 12 H 0.048 0.952 13 C 0.018 3.982 14 N -0.942 5.942 15 Si 0.938 3.062 16 H -0.274 1.274 17 H -0.278 1.278 18 H -0.255 1.255 19 N -0.452 5.452 20 C 0.140 3.860 21 C -0.168 4.168 22 C -0.135 4.135 23 C -0.121 4.121 24 C 0.030 3.970 25 C -0.212 4.212 26 C -0.157 4.157 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.019 0.981 35 H 0.008 0.992 36 H 0.268 0.732 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.145 0.855 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.124 0.876 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.890 -17.062 11.707 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.033 4.033 4 N -0.143 5.143 5 C -0.014 4.014 6 N -0.174 5.174 7 N -0.171 5.171 8 C -0.069 4.069 9 C -0.052 4.052 10 C -0.033 4.033 11 C -0.564 4.564 12 H 0.066 0.934 13 C -0.181 4.181 14 N -0.582 5.582 15 Si 0.762 3.238 16 H -0.200 1.200 17 H -0.203 1.203 18 H -0.179 1.179 19 N -0.143 5.143 20 C 0.019 3.981 21 C -0.168 4.168 22 C -0.172 4.172 23 C -0.177 4.177 24 C -0.078 4.078 25 C -0.251 4.251 26 C -0.195 4.195 27 H 0.139 0.861 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.037 0.963 35 H 0.026 0.974 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.162 0.838 45 H 0.095 0.905 46 H 0.122 0.878 47 H 0.142 0.858 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.227 -16.185 11.745 27.741 hybrid contribution 0.449 0.162 -1.144 1.240 sum -18.778 -16.022 10.600 26.865 Atomic orbital electron populations 1.24093 0.95339 1.03073 0.98223 1.22650 0.95742 0.96777 1.01716 1.21314 0.93455 0.97321 0.91222 1.58657 1.13570 1.38235 1.03850 1.22418 0.84901 0.90576 1.03490 1.74537 1.19399 1.02603 1.20900 1.73989 0.96067 1.27365 1.19686 1.25207 0.99059 0.80548 1.02045 1.20005 0.83946 1.03006 0.98213 1.19374 0.95427 0.96303 0.92183 1.21274 0.94313 1.47423 0.93398 0.93371 1.25769 0.96633 0.94196 1.01453 1.70018 1.17648 1.49468 1.21086 0.85848 0.79616 0.79339 0.78961 1.19957 1.20341 1.17910 1.46529 1.07796 1.08215 1.51763 1.21127 0.97938 0.81776 0.97289 1.21724 0.98660 1.00374 0.96084 1.24008 0.97926 0.95657 0.99643 1.20894 0.94699 1.01924 1.00202 1.22682 0.97556 1.03790 0.83770 1.23642 1.04363 0.92535 1.04582 1.23328 1.01823 0.96827 0.97492 0.86079 0.88489 0.85696 0.93056 0.91360 0.89563 0.88874 0.96275 0.97365 0.92328 0.88371 0.86676 0.86851 0.86385 0.92994 0.91888 0.89626 0.83772 0.90541 0.87804 0.85815 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 14.32 67.78 0.97 -0.93 16 2 C -0.15 -2.13 9.05 25.65 0.23 -1.89 16 3 C 0.09 1.92 5.29 85.56 0.45 2.37 16 4 N -0.42 -9.47 4.66 -686.38 -3.20 -12.66 16 5 C 0.34 10.45 5.36 260.11 1.40 11.85 16 6 N -0.33 -12.33 9.62 -58.00 -0.56 -12.89 16 7 N -0.33 -13.79 12.18 -49.54 -0.60 -14.39 16 8 C 0.20 7.56 7.32 137.64 1.01 8.56 16 9 C -0.01 -0.48 5.31 29.85 0.16 -0.32 16 10 C 0.01 0.27 4.02 29.85 0.12 0.39 16 11 C -0.53 -29.40 9.66 25.60 0.25 -29.16 16 12 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 13 C 0.02 1.01 5.47 84.66 0.46 1.47 16 14 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 15 Si 0.94 44.57 27.47 68.60 1.88 46.45 16 16 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.26 -11.46 6.54 99.48 0.65 -10.81 16 19 N -0.45 -14.06 2.79 -518.90 -1.45 -15.51 16 20 C 0.14 3.45 6.04 85.63 0.52 3.96 16 21 C -0.17 -3.47 5.63 -16.49 -0.09 -3.57 16 22 C -0.13 -2.17 11.70 67.78 0.79 -1.38 16 23 C -0.12 -2.55 10.05 71.24 0.72 -1.83 16 24 C 0.03 0.59 5.70 44.92 0.26 0.84 16 25 C -0.21 -5.08 9.18 30.60 0.28 -4.80 16 26 C -0.16 -2.83 10.33 30.59 0.32 -2.52 16 27 H 0.12 0.93 8.06 -2.91 -0.02 0.91 16 28 H 0.10 1.10 7.84 -2.91 -0.02 1.07 16 29 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 30 H 0.05 1.13 7.71 -2.39 -0.02 1.11 16 31 H 0.07 1.61 7.97 -2.38 -0.02 1.59 16 32 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.09 3.34 5.72 -2.38 -0.01 3.33 16 34 H 0.02 0.87 7.20 -2.38 -0.02 0.85 16 35 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.10 2.61 7.60 -2.39 -0.02 2.59 16 38 H 0.12 2.41 7.99 -2.39 -0.02 2.40 16 39 H 0.11 1.73 7.99 -2.91 -0.02 1.71 16 40 H 0.12 1.52 8.05 -2.91 -0.02 1.50 16 41 H 0.05 1.29 5.95 -2.39 -0.01 1.28 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.14 2.25 7.58 -2.39 -0.02 2.24 16 45 H 0.08 2.49 5.26 -2.39 -0.01 2.48 16 46 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 48 H 0.09 1.82 5.72 -2.39 -0.01 1.80 16 Total: -1.00 -69.36 389.15 5.08 -64.28 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.88 Total: 19.15 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 7.83 Total: -16.94 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -5.51 Total: -112.94 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -69.36 5.08 -64.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122554843.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.894 kcal (2) G-P(sol) polarization free energy of solvation -69.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds