Wall clock time and date at job start Tue Mar 31 2020 12:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46904 * 109.46699 * 215.21008 * 3 2 1 5 5 C 1.46902 * 110.99847 * 70.74748 * 4 3 2 6 6 C 1.53002 * 109.46950 * 199.52760 * 5 4 3 7 7 C 1.38577 * 110.99820 * 194.69570 * 4 3 2 8 8 N 1.31218 * 126.47620 * 236.08589 * 7 4 3 9 9 N 1.28530 * 109.86016 * 179.69835 * 8 7 4 10 10 C 1.30287 * 110.05262 * 0.45428 * 9 8 7 11 11 C 1.50703 * 126.34712 * 179.82502 * 10 9 8 12 12 C 1.52997 * 109.46934 * 0.88383 * 11 10 9 13 13 C 1.53004 * 109.46866 * 240.88750 * 11 10 9 14 14 C 1.50699 * 109.47420 * 120.88572 * 11 10 9 15 15 H 1.07998 * 119.99867 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99925 * 180.27105 * 14 11 10 17 17 N 1.31514 * 120.00295 * 359.73263 * 16 14 11 18 18 Si 1.86800 * 120.00182 * 179.72491 * 16 14 11 19 19 H 1.48498 * 109.46995 * 90.00371 * 18 16 14 20 20 H 1.48498 * 109.47263 * 210.00718 * 18 16 14 21 21 H 1.48511 * 109.46796 * 330.00602 * 18 16 14 22 22 N 1.36453 * 126.46896 * 56.05388 * 7 4 3 23 23 C 1.46499 * 127.13881 * 0.04776 * 22 7 4 24 24 C 1.53002 * 109.46972 * 266.72221 * 23 22 7 25 25 C 1.52998 * 117.49411 * 241.30967 * 24 23 22 26 26 C 1.52998 * 60.00051 * 252.51228 * 25 24 23 27 27 H 4.40889 * 5.52221 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.47163 * 95.21824 * 3 2 1 29 29 H 1.08996 * 109.47372 * 335.20713 * 3 2 1 30 30 H 1.09005 * 109.47051 * 319.52168 * 5 4 3 31 31 H 1.08996 * 109.47206 * 79.52485 * 5 4 3 32 32 H 1.09009 * 109.46932 * 184.97247 * 6 5 4 33 33 H 1.09004 * 109.46958 * 304.96684 * 6 5 4 34 34 H 1.08999 * 109.47660 * 64.96699 * 6 5 4 35 35 H 1.09005 * 109.47032 * 175.20501 * 12 11 10 36 36 H 1.09003 * 109.47366 * 295.20543 * 12 11 10 37 37 H 1.09005 * 109.46986 * 55.20468 * 12 11 10 38 38 H 1.08995 * 109.47072 * 304.64449 * 13 11 10 39 39 H 1.09003 * 109.47052 * 64.64679 * 13 11 10 40 40 H 1.09003 * 109.46881 * 184.64422 * 13 11 10 41 41 H 0.97001 * 120.00462 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.46822 * 26.72189 * 23 22 7 43 43 H 1.09004 * 109.46853 * 146.72000 * 23 22 7 44 44 H 1.08992 * 115.54990 * 27.01620 * 24 23 22 45 45 H 1.09005 * 117.50485 * 0.02562 * 25 24 23 46 46 H 1.09003 * 117.49607 * 145.02146 * 25 24 23 47 47 H 1.09002 * 117.50240 * 252.50916 * 26 25 24 48 48 H 1.09000 * 117.49691 * 107.49296 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.1325 0.7986 5 6 2.8843 0.9145 2.2295 6 6 2.9418 2.2538 2.9672 7 6 4.4804 1.3641 0.5599 8 7 5.4379 1.3939 1.4566 9 7 6.5647 1.6285 0.8846 10 6 6.3930 1.7709 -0.3991 11 6 7.4659 2.0596 -1.4172 12 6 8.8238 2.1432 -0.7173 13 6 7.1665 3.3905 -2.1101 14 6 7.4962 0.9552 -2.4421 15 1 6.8071 0.1273 -2.3644 16 6 8.4070 0.9993 -3.4763 17 7 9.2458 2.0077 -3.5713 18 14 8.4497 -0.3734 -4.7424 19 1 7.5349 -0.0410 -5.8640 20 1 9.8330 -0.5262 -5.2605 21 1 8.0150 -1.6445 -4.1092 22 7 5.0596 1.6038 -0.6521 23 6 4.3914 1.6689 -1.9543 24 6 4.4419 0.2936 -2.6227 25 6 5.1759 0.1851 -3.9608 26 6 3.6485 0.1080 -3.9177 27 1 -1.0502 -0.0002 -0.0004 28 1 3.0093 0.0943 -1.0234 29 1 3.0098 -0.9321 0.4309 30 1 1.8983 0.4690 2.3618 31 1 3.6430 0.2443 2.6334 32 1 2.8438 2.0826 4.0393 33 1 3.8955 2.7405 2.7627 34 1 2.1274 2.8923 2.6252 35 1 9.6097 2.2670 -1.4624 36 1 8.8303 2.9951 -0.0373 37 1 8.9989 1.2269 -0.1534 38 1 6.1648 3.3598 -2.5385 39 1 7.2261 4.2002 -1.3828 40 1 7.8956 3.5595 -2.9026 41 1 9.8869 2.0385 -4.2986 42 1 3.3524 1.9673 -1.8149 43 1 4.8975 2.3989 -2.5861 44 1 4.5036 -0.5570 -1.9440 45 1 5.6232 1.0933 -4.3647 46 1 5.7208 -0.7372 -4.1625 47 1 3.1884 -0.8648 -4.0911 48 1 3.0905 0.9657 -4.2934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123587380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:43 Heat of formation + Delta-G solvation = 183.683007 kcal Electronic energy + Delta-G solvation = -28592.497315 eV Core-core repulsion = 25073.554101 eV Total energy + Delta-G solvation = -3518.943214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.34085 -38.06893 -37.57687 -35.43218 -33.71180 -33.27457 -31.46905 -30.52361 -28.51154 -27.38371 -25.80294 -25.54866 -25.40434 -23.02051 -22.16664 -21.93978 -20.84959 -19.75806 -18.96877 -18.26929 -17.17713 -16.30744 -15.76266 -15.66027 -15.26813 -14.85119 -14.67792 -14.41912 -13.87865 -13.75835 -13.43733 -13.30896 -12.87640 -12.52002 -12.01692 -11.87171 -11.69299 -11.51800 -11.43688 -11.21726 -11.12668 -11.04049 -10.94084 -10.74001 -10.69875 -10.51357 -10.37539 -10.25717 -10.16852 -9.99156 -9.87661 -9.78996 -9.62656 -9.25863 -9.18485 -8.82451 -8.45101 -7.57836 -6.11434 -4.20612 2.24210 2.70978 2.75025 2.98312 3.16175 3.26546 3.28051 3.67195 3.97708 4.08778 4.26447 4.28689 4.91621 4.98931 5.04715 5.13897 5.16340 5.24627 5.31979 5.38053 5.44344 5.48805 5.59908 5.64050 5.77441 5.79077 5.83007 5.86716 5.95707 6.07338 6.22878 6.30886 6.36902 6.42304 6.52091 6.61731 6.64762 6.79876 6.87622 6.92355 7.08828 7.25005 7.31880 7.47828 7.50996 7.59995 7.80611 7.92844 8.07467 8.25627 8.76972 9.42828 9.61252 10.89835 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.005604 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.586973 B = 4994.866800 C = 6339.448950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C 0.144 3.856 4 N -0.446 5.446 5 C 0.067 3.933 6 C -0.142 4.142 7 C 0.317 3.683 8 N -0.323 5.323 9 N -0.313 5.313 10 C 0.251 3.749 11 C 0.145 3.855 12 C -0.118 4.118 13 C -0.134 4.134 14 C -0.503 4.503 15 H 0.068 0.932 16 C 0.072 3.928 17 N -0.881 5.881 18 Si 0.884 3.116 19 H -0.276 1.276 20 H -0.290 1.290 21 H -0.275 1.275 22 N -0.471 5.471 23 C 0.141 3.859 24 C -0.169 4.169 25 C -0.134 4.134 26 C -0.189 4.189 27 H 0.219 0.781 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.017 0.983 37 H 0.033 0.967 38 H 0.025 0.975 39 H 0.015 0.985 40 H 0.099 0.901 41 H 0.262 0.738 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.159 -2.028 1.573 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.174 4.174 3 C 0.018 3.982 4 N -0.169 5.169 5 C -0.059 4.059 6 C -0.200 4.200 7 C -0.039 4.039 8 N -0.167 5.167 9 N -0.150 5.150 10 C -0.016 4.016 11 C 0.142 3.858 12 C -0.177 4.177 13 C -0.193 4.193 14 C -0.542 4.542 15 H 0.086 0.914 16 C -0.130 4.130 17 N -0.520 5.520 18 Si 0.713 3.287 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.201 1.201 22 N -0.165 5.165 23 C 0.018 3.982 24 C -0.188 4.188 25 C -0.171 4.171 26 C -0.227 4.227 27 H 0.236 0.764 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.036 0.964 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.034 0.966 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.130 0.870 44 H 0.118 0.882 45 H 0.130 0.870 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.573 -1.612 2.698 13.932 hybrid contribution -0.542 -1.431 -1.681 2.273 sum -14.115 -3.043 1.016 14.475 Atomic orbital electron populations 1.24830 0.95705 1.00029 1.00619 1.22570 0.93695 1.00593 1.00528 1.19487 0.85740 0.92299 1.00632 1.58630 1.09214 1.39101 1.09983 1.22069 1.00999 0.99249 0.83614 1.21692 1.03081 0.96463 0.98780 1.22316 0.90602 1.07013 0.84007 1.74426 0.94648 1.22184 1.25465 1.74000 1.15954 1.20742 1.04342 1.26070 0.82948 0.97915 0.94712 1.16925 0.86343 0.94817 0.87739 1.21630 0.98981 0.98176 0.98870 1.21977 1.00570 0.95536 1.01178 1.21127 1.18636 1.06377 1.08011 0.91410 1.24778 0.95129 0.95467 0.97585 1.69780 1.20393 1.29919 1.31880 0.86796 0.77326 0.82698 0.81906 1.20177 1.21605 1.20062 1.46093 1.08634 1.54945 1.06838 1.21543 0.97366 0.97452 0.81804 1.22454 1.07359 0.97521 0.91505 1.23066 0.91858 1.04227 0.97924 1.23138 0.96266 1.02645 1.00612 0.76442 0.86569 0.91395 0.90514 0.92149 0.92191 0.91184 0.92824 0.89134 0.96434 0.94750 0.95598 0.96568 0.88280 0.92732 0.89652 0.87038 0.88166 0.87023 0.89392 0.89136 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 19.25 29.55 0.57 -1.41 16 2 C -0.17 -2.14 12.50 -37.12 -0.46 -2.60 16 3 C 0.14 1.98 5.17 -6.61 -0.03 1.94 16 4 N -0.45 -6.93 4.44 -177.84 -0.79 -7.72 16 5 C 0.07 0.94 5.24 -3.82 -0.02 0.92 16 6 C -0.14 -1.92 10.00 37.16 0.37 -1.55 16 7 C 0.32 6.01 6.74 -318.88 -2.15 3.86 16 8 N -0.32 -6.96 10.01 30.31 0.30 -6.66 16 9 N -0.31 -7.42 11.47 32.99 0.38 -7.04 16 10 C 0.25 5.63 6.28 -154.01 -0.97 4.66 16 11 C 0.14 3.33 0.53 -156.81 -0.08 3.25 16 12 C -0.12 -2.84 7.83 37.16 0.29 -2.55 16 13 C -0.13 -2.94 8.24 37.16 0.31 -2.64 16 14 C -0.50 -11.77 5.52 -34.44 -0.19 -11.96 16 15 H 0.07 1.59 4.81 -52.49 -0.25 1.34 16 16 C 0.07 1.72 5.13 -17.82 -0.09 1.63 16 17 N -0.88 -21.88 9.30 55.43 0.52 -21.36 16 18 Si 0.88 19.07 26.35 -169.99 -4.48 14.59 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 N -0.47 -9.10 2.80 -114.08 -0.32 -9.42 16 23 C 0.14 2.30 4.82 -4.04 -0.02 2.28 16 24 C -0.17 -2.60 2.90 -90.62 -0.26 -2.87 16 25 C -0.13 -2.17 6.08 -26.73 -0.16 -2.34 16 26 C -0.19 -2.41 10.25 -26.73 -0.27 -2.69 16 27 H 0.22 1.38 7.80 -54.08 -0.42 0.96 16 28 H 0.12 1.61 3.10 -51.93 -0.16 1.45 16 29 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.08 0.92 7.07 -51.93 -0.37 0.55 16 31 H 0.06 0.91 7.52 -51.93 -0.39 0.52 16 32 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.07 1.15 6.81 -51.93 -0.35 0.80 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 2.28 5.94 -51.93 -0.31 1.97 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.03 0.52 5.14 -51.93 -0.27 0.25 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 2.33 5.97 -51.93 -0.31 2.02 16 41 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 42 H 0.09 1.24 7.61 -51.93 -0.39 0.84 16 43 H 0.11 1.91 4.87 -51.93 -0.25 1.65 16 44 H 0.10 1.63 7.36 -51.93 -0.38 1.25 16 45 H 0.11 1.96 7.56 -51.93 -0.39 1.57 16 46 H 0.09 1.52 6.32 -51.93 -0.33 1.19 16 47 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -27.05 363.39 -9.19 -36.23 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.09 Total: 7.95 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -3.18 Total: -12.06 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.09 Total: -52.20 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.48 Total: 14.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.05 -9.19 -36.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123587380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.918 kcal (2) G-P(sol) polarization free energy of solvation -27.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds