Wall clock time and date at job start Tue Mar 31 2020 12:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46904 * 109.46699 * 215.21008 * 3 2 1 5 5 C 1.46902 * 110.99847 * 70.74748 * 4 3 2 6 6 C 1.53002 * 109.46950 * 199.52760 * 5 4 3 7 7 C 1.38577 * 110.99820 * 194.69570 * 4 3 2 8 8 N 1.31218 * 126.47620 * 236.08589 * 7 4 3 9 9 N 1.28530 * 109.86016 * 179.69835 * 8 7 4 10 10 C 1.30287 * 110.05262 * 0.45428 * 9 8 7 11 11 C 1.50703 * 126.34712 * 179.82502 * 10 9 8 12 12 C 1.52997 * 109.46934 * 0.88383 * 11 10 9 13 13 C 1.53004 * 109.46866 * 240.88750 * 11 10 9 14 14 C 1.50699 * 109.47420 * 120.88572 * 11 10 9 15 15 H 1.07998 * 119.99867 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99925 * 180.27105 * 14 11 10 17 17 N 1.31514 * 120.00295 * 359.73263 * 16 14 11 18 18 Si 1.86800 * 120.00182 * 179.72491 * 16 14 11 19 19 H 1.48498 * 109.46995 * 90.00371 * 18 16 14 20 20 H 1.48498 * 109.47263 * 210.00718 * 18 16 14 21 21 H 1.48511 * 109.46796 * 330.00602 * 18 16 14 22 22 N 1.36453 * 126.46896 * 56.05388 * 7 4 3 23 23 C 1.46499 * 127.13881 * 0.04776 * 22 7 4 24 24 C 1.53002 * 109.46972 * 266.72221 * 23 22 7 25 25 C 1.52998 * 117.49411 * 241.30967 * 24 23 22 26 26 C 1.52998 * 60.00051 * 252.51228 * 25 24 23 27 27 H 4.40889 * 5.52221 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.47163 * 95.21824 * 3 2 1 29 29 H 1.08996 * 109.47372 * 335.20713 * 3 2 1 30 30 H 1.09005 * 109.47051 * 319.52168 * 5 4 3 31 31 H 1.08996 * 109.47206 * 79.52485 * 5 4 3 32 32 H 1.09009 * 109.46932 * 184.97247 * 6 5 4 33 33 H 1.09004 * 109.46958 * 304.96684 * 6 5 4 34 34 H 1.08999 * 109.47660 * 64.96699 * 6 5 4 35 35 H 1.09005 * 109.47032 * 175.20501 * 12 11 10 36 36 H 1.09003 * 109.47366 * 295.20543 * 12 11 10 37 37 H 1.09005 * 109.46986 * 55.20468 * 12 11 10 38 38 H 1.08995 * 109.47072 * 304.64449 * 13 11 10 39 39 H 1.09003 * 109.47052 * 64.64679 * 13 11 10 40 40 H 1.09003 * 109.46881 * 184.64422 * 13 11 10 41 41 H 0.97001 * 120.00462 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.46822 * 26.72189 * 23 22 7 43 43 H 1.09004 * 109.46853 * 146.72000 * 23 22 7 44 44 H 1.08992 * 115.54990 * 27.01620 * 24 23 22 45 45 H 1.09005 * 117.50485 * 0.02562 * 25 24 23 46 46 H 1.09003 * 117.49607 * 145.02146 * 25 24 23 47 47 H 1.09002 * 117.50240 * 252.50916 * 26 25 24 48 48 H 1.09000 * 117.49691 * 107.49296 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.1325 0.7986 5 6 2.8843 0.9145 2.2295 6 6 2.9418 2.2538 2.9672 7 6 4.4804 1.3641 0.5599 8 7 5.4379 1.3939 1.4566 9 7 6.5647 1.6285 0.8846 10 6 6.3930 1.7709 -0.3991 11 6 7.4659 2.0596 -1.4172 12 6 8.8238 2.1432 -0.7173 13 6 7.1665 3.3905 -2.1101 14 6 7.4962 0.9552 -2.4421 15 1 6.8071 0.1273 -2.3644 16 6 8.4070 0.9993 -3.4763 17 7 9.2458 2.0077 -3.5713 18 14 8.4497 -0.3734 -4.7424 19 1 7.5349 -0.0410 -5.8640 20 1 9.8330 -0.5262 -5.2605 21 1 8.0150 -1.6445 -4.1092 22 7 5.0596 1.6038 -0.6521 23 6 4.3914 1.6689 -1.9543 24 6 4.4419 0.2936 -2.6227 25 6 5.1759 0.1851 -3.9608 26 6 3.6485 0.1080 -3.9177 27 1 -1.0502 -0.0002 -0.0004 28 1 3.0093 0.0943 -1.0234 29 1 3.0098 -0.9321 0.4309 30 1 1.8983 0.4690 2.3618 31 1 3.6430 0.2443 2.6334 32 1 2.8438 2.0826 4.0393 33 1 3.8955 2.7405 2.7627 34 1 2.1274 2.8923 2.6252 35 1 9.6097 2.2670 -1.4624 36 1 8.8303 2.9951 -0.0373 37 1 8.9989 1.2269 -0.1534 38 1 6.1648 3.3598 -2.5385 39 1 7.2261 4.2002 -1.3828 40 1 7.8956 3.5595 -2.9026 41 1 9.8869 2.0385 -4.2986 42 1 3.3524 1.9673 -1.8149 43 1 4.8975 2.3989 -2.5861 44 1 4.5036 -0.5570 -1.9440 45 1 5.6232 1.0933 -4.3647 46 1 5.7208 -0.7372 -4.1625 47 1 3.1884 -0.8648 -4.0911 48 1 3.0905 0.9657 -4.2934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123587380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:42 Heat of formation + Delta-G solvation = 172.085240 kcal Electronic energy + Delta-G solvation = -28593.000232 eV Core-core repulsion = 25073.554101 eV Total energy + Delta-G solvation = -3519.446131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.91538 -39.31608 -38.87572 -37.15754 -35.17673 -34.21866 -33.25725 -31.67714 -30.00708 -28.77914 -27.63273 -27.26481 -26.75027 -24.29613 -23.76831 -23.15091 -22.18695 -21.15598 -20.60773 -19.16244 -18.59956 -17.99215 -17.10500 -17.07052 -16.81890 -16.22238 -15.97142 -15.67753 -15.26491 -15.11096 -14.82949 -14.57660 -14.42579 -13.94363 -13.47032 -13.28215 -13.05193 -12.96436 -12.88988 -12.81640 -12.75008 -12.46434 -12.39283 -12.24575 -12.20551 -12.07762 -11.86870 -11.66885 -11.60542 -11.36821 -11.28371 -11.18662 -11.06402 -10.77977 -10.63876 -10.46271 -10.31276 -9.11462 -7.97517 -6.09847 0.89190 1.37164 1.43220 1.49563 1.53237 1.77499 1.88735 2.07831 2.48271 2.79847 2.90380 3.28199 3.37156 3.64369 3.77905 3.90062 3.92261 4.05363 4.08735 4.13953 4.20690 4.25810 4.32694 4.44001 4.54974 4.57382 4.63664 4.74186 4.84501 4.90979 4.92561 5.00858 5.02144 5.07256 5.09252 5.17038 5.21588 5.28437 5.34199 5.35926 5.41669 5.57431 5.59079 5.67570 5.80159 6.02577 6.15515 6.33442 6.38515 6.67312 6.89447 7.55091 7.97888 9.03269 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.005604 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.586973 B = 4994.866800 C = 6339.448950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.224 4.224 3 C 0.148 3.852 4 N -0.442 5.442 5 C 0.067 3.933 6 C -0.137 4.137 7 C 0.336 3.664 8 N -0.351 5.351 9 N -0.345 5.345 10 C 0.234 3.766 11 C 0.142 3.858 12 C -0.108 4.108 13 C -0.123 4.123 14 C -0.497 4.497 15 H 0.067 0.933 16 C 0.042 3.958 17 N -0.902 5.902 18 Si 0.929 3.071 19 H -0.260 1.260 20 H -0.301 1.301 21 H -0.279 1.279 22 N -0.469 5.469 23 C 0.142 3.858 24 C -0.176 4.176 25 C -0.158 4.158 26 C -0.147 4.147 27 H 0.256 0.744 28 H 0.113 0.887 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.016 0.984 37 H 0.018 0.982 38 H 0.041 0.959 39 H 0.013 0.987 40 H 0.082 0.918 41 H 0.260 0.740 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.111 0.889 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.046 -2.738 0.894 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.224 4.224 3 C 0.023 3.977 4 N -0.167 5.167 5 C -0.059 4.059 6 C -0.194 4.194 7 C -0.021 4.021 8 N -0.195 5.195 9 N -0.183 5.183 10 C -0.036 4.036 11 C 0.139 3.861 12 C -0.166 4.166 13 C -0.181 4.181 14 C -0.536 4.536 15 H 0.085 0.915 16 C -0.158 4.158 17 N -0.542 5.542 18 Si 0.757 3.243 19 H -0.184 1.184 20 H -0.229 1.229 21 H -0.204 1.204 22 N -0.163 5.163 23 C 0.020 3.980 24 C -0.195 4.195 25 C -0.195 4.195 26 C -0.184 4.184 27 H 0.272 0.728 28 H 0.131 0.869 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.060 0.940 39 H 0.032 0.968 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.093 0.907 47 H 0.130 0.870 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.489 -2.328 2.010 17.757 hybrid contribution 0.520 -1.224 -1.404 1.934 sum -16.968 -3.552 0.606 17.347 Atomic orbital electron populations 1.25715 0.96360 0.97112 0.97709 1.22410 0.93594 1.03234 1.03184 1.19377 0.87263 0.91139 0.99942 1.58798 1.06511 1.40150 1.11204 1.22167 1.01834 0.99311 0.82596 1.21649 1.01476 0.96073 1.00231 1.22664 0.91577 1.04516 0.83341 1.74345 0.94742 1.24110 1.26272 1.73901 1.17509 1.21662 1.05206 1.25782 0.84184 0.99279 0.94310 1.16864 0.86062 0.95330 0.87874 1.21496 0.99652 0.97242 0.98209 1.21821 1.00973 0.94904 1.00424 1.21175 1.18325 1.06247 1.07808 0.91543 1.25227 0.94984 0.96776 0.98827 1.69882 1.20903 1.31079 1.32295 0.86085 0.76705 0.80682 0.80804 1.18450 1.22853 1.20448 1.46172 1.07719 1.54392 1.07982 1.21711 0.97982 0.97940 0.80349 1.22343 1.08958 0.96503 0.91677 1.22935 0.94627 1.02859 0.99109 1.23240 0.93744 1.04634 0.96788 0.72759 0.86886 0.91730 0.87853 0.93663 0.90080 0.94552 0.91811 0.90479 0.96508 0.96308 0.94016 0.96752 0.89913 0.92986 0.87390 0.87974 0.89219 0.88683 0.90727 0.87030 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 19.25 74.32 1.43 -0.92 16 2 C -0.22 -4.75 12.50 31.13 0.39 -4.36 16 3 C 0.15 3.77 5.17 84.50 0.44 4.21 16 4 N -0.44 -13.13 4.44 -716.55 -3.18 -16.31 16 5 C 0.07 1.77 5.24 86.30 0.45 2.22 16 6 C -0.14 -3.51 10.00 71.98 0.72 -2.79 16 7 C 0.34 12.68 6.74 260.11 1.75 14.43 16 8 N -0.35 -15.44 10.01 -58.01 -0.58 -16.02 16 9 N -0.35 -16.87 11.47 -49.53 -0.57 -17.44 16 10 C 0.23 10.69 6.28 137.64 0.86 11.56 16 11 C 0.14 6.69 0.53 -53.67 -0.03 6.66 16 12 C -0.11 -5.38 7.83 71.98 0.56 -4.81 16 13 C -0.12 -5.48 8.24 71.98 0.59 -4.88 16 14 C -0.50 -23.63 5.52 25.60 0.14 -23.48 16 15 H 0.07 3.15 4.81 -2.91 -0.01 3.14 16 16 C 0.04 2.01 5.13 84.65 0.43 2.44 16 17 N -0.90 -45.72 9.30 21.45 0.20 -45.52 16 18 Si 0.93 39.41 26.35 68.60 1.81 41.21 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 20 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 22 N -0.47 -18.05 2.80 -514.85 -1.44 -19.49 16 23 C 0.14 4.42 4.82 86.38 0.42 4.84 16 24 C -0.18 -5.13 2.90 -10.79 -0.03 -5.16 16 25 C -0.16 -4.93 6.08 30.59 0.19 -4.74 16 26 C -0.15 -3.25 10.25 30.59 0.31 -2.94 16 27 H 0.26 1.65 7.80 -4.41 -0.03 1.61 16 28 H 0.11 2.91 3.10 -2.39 -0.01 2.90 16 29 H 0.06 1.66 8.07 -2.39 -0.02 1.64 16 30 H 0.10 2.19 7.07 -2.38 -0.02 2.17 16 31 H 0.04 1.34 7.52 -2.39 -0.02 1.33 16 32 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.04 1.18 6.81 -2.39 -0.02 1.17 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 35 H 0.08 4.03 5.94 -2.38 -0.01 4.02 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.02 0.93 8.11 -2.38 -0.02 0.91 16 38 H 0.04 1.68 5.14 -2.39 -0.01 1.67 16 39 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 3.98 5.97 -2.39 -0.01 3.96 16 41 H 0.26 12.85 8.31 -92.71 -0.77 12.07 16 42 H 0.11 2.85 7.61 -2.39 -0.02 2.84 16 43 H 0.10 3.39 4.87 -2.38 -0.01 3.38 16 44 H 0.09 2.84 7.36 -2.39 -0.02 2.82 16 45 H 0.09 3.28 7.56 -2.38 -0.02 3.26 16 46 H 0.07 2.51 6.32 -2.39 -0.02 2.49 16 47 H 0.11 2.06 8.14 -2.39 -0.02 2.05 16 48 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -60.45 363.39 5.84 -54.61 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.97 Total: 26.69 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 8.64 Total: -7.73 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -5.57 Total: -114.78 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.81 Total: 41.21 kcal Total: -60.45 5.84 -54.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123587380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.697 kcal (2) G-P(sol) polarization free energy of solvation -60.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds