Wall clock time and date at job start Tue Mar 31 2020 11:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99872 * 2 1 4 4 N 1.46908 * 109.47200 * 127.97597 * 3 2 1 5 5 C 1.38573 * 111.00124 * 157.87708 * 4 3 2 6 6 N 1.31218 * 126.47135 * 105.24185 * 5 4 3 7 7 N 1.28534 * 109.85814 * 179.82382 * 6 5 4 8 8 C 1.30292 * 110.05399 * 0.44780 * 7 6 5 9 9 C 1.50701 * 126.34892 * 179.76339 * 8 7 6 10 10 C 1.53006 * 109.47084 * 269.96315 * 9 8 7 11 11 C 1.50695 * 109.47030 * 179.97438 * 10 9 8 12 12 H 1.08010 * 119.99855 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00381 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00316 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99377 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47188 * 90.00097 * 15 13 11 17 17 H 1.48508 * 109.46759 * 209.99960 * 15 13 11 18 18 H 1.48503 * 109.47194 * 329.99533 * 15 13 11 19 19 N 1.36454 * 126.47284 * 285.55100 * 5 4 3 20 20 C 1.46500 * 127.13767 * 0.02562 * 19 5 4 21 21 C 1.53004 * 109.46978 * 95.95308 * 20 19 5 22 22 C 1.52998 * 117.49908 * 240.07301 * 21 20 19 23 23 C 1.52996 * 60.00400 * 252.51621 * 22 21 20 24 24 C 1.46897 * 110.99616 * 281.83474 * 4 3 2 25 25 C 1.52998 * 117.50453 * 69.15488 * 24 4 3 26 26 C 1.53001 * 60.00105 * 252.51165 * 25 24 4 27 27 H 1.07995 * 120.00171 * 185.66034 * 1 2 3 28 28 H 1.07998 * 119.99858 * 5.66019 * 1 2 3 29 29 H 1.08006 * 119.99973 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47363 * 7.97441 * 3 2 1 31 31 H 1.09001 * 109.47035 * 247.96959 * 3 2 1 32 32 H 1.09006 * 109.46811 * 29.95757 * 9 8 7 33 33 H 1.08991 * 109.47329 * 149.96191 * 9 8 7 34 34 H 1.08992 * 109.46861 * 299.99672 * 10 9 8 35 35 H 1.08999 * 109.46802 * 59.99698 * 10 9 8 36 36 H 0.97002 * 119.99877 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.46943 * 215.95424 * 20 19 5 38 38 H 1.08994 * 109.46935 * 335.95576 * 20 19 5 39 39 H 1.08992 * 115.55092 * 25.78785 * 21 20 19 40 40 H 1.08999 * 117.49576 * 0.02562 * 22 21 20 41 41 H 1.08999 * 117.50047 * 145.02071 * 22 21 20 42 42 H 1.09001 * 117.50152 * 252.51422 * 23 22 21 43 43 H 1.08997 * 117.50278 * 107.48792 * 23 22 21 44 44 H 1.08999 * 115.55867 * 214.84489 * 24 4 3 45 45 H 1.08998 * 117.49961 * 145.01493 * 25 24 4 46 46 H 1.09000 * 117.49438 * 0.02562 * 25 24 4 47 47 H 1.08995 * 117.50208 * 107.49027 * 26 25 24 48 48 H 1.09001 * 117.49441 * 252.50993 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0464 1.3031 1.0918 5 6 4.0633 2.2118 0.8462 6 7 4.2252 3.3772 1.4272 7 7 5.2741 3.9556 0.9611 8 6 5.8336 3.2040 0.0557 9 6 7.0786 3.5280 -0.7293 10 6 6.6942 4.2644 -2.0142 11 6 7.9391 4.5889 -2.7988 12 1 8.9078 4.2993 -2.4188 13 6 7.8418 5.2555 -4.0018 14 7 8.9282 5.5383 -4.6868 15 14 6.1664 5.7570 -4.6586 16 1 5.8263 7.1147 -4.1624 17 1 6.1995 5.7664 -6.1433 18 1 5.1418 4.7884 -4.1925 19 7 5.0822 2.0664 -0.0498 20 6 5.3212 0.9280 -0.9403 21 6 4.7243 1.2239 -2.3177 22 6 3.6399 0.2771 -2.8359 23 6 5.0408 0.2446 -3.4499 24 6 2.3996 1.5729 2.3828 25 6 1.4738 0.4941 2.9484 26 6 0.8848 1.7880 2.3828 27 1 -0.5400 -0.9307 0.0922 28 1 -0.5400 0.9307 -0.0922 29 1 1.8501 -0.9354 0.0004 30 1 1.3638 2.1286 0.1426 31 1 2.5790 1.4270 -0.9526 32 1 7.7319 4.1615 -0.1291 33 1 7.5996 2.6046 -0.9817 34 1 6.0409 3.6311 -2.6143 35 1 6.1732 5.1879 -1.7617 36 1 8.8596 6.0076 -5.5329 37 1 6.3940 0.7615 -1.0373 38 1 4.8513 0.0367 -0.5246 39 1 4.6364 2.2793 -2.5750 40 1 3.3514 -0.5563 -2.1953 41 1 2.8380 0.7097 -3.4341 42 1 5.1608 0.6558 -4.4522 43 1 5.6743 -0.6103 -3.2135 44 1 2.9902 2.1520 3.0927 45 1 1.4553 0.3634 4.0304 46 1 1.3450 -0.4161 2.3627 47 1 0.3681 1.7292 1.4249 48 1 0.4788 2.5086 3.0928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123696672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:45 Heat of formation + Delta-G solvation = 169.370053 kcal Electronic energy + Delta-G solvation = -27555.322722 eV Core-core repulsion = 24035.758851 eV Total energy + Delta-G solvation = -3519.563870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.75377 -39.48890 -37.83281 -34.64409 -34.54400 -34.06640 -33.24806 -31.67118 -28.81865 -27.61321 -26.32420 -25.16162 -22.81404 -22.63624 -22.41767 -21.62694 -21.24467 -20.49594 -19.62597 -19.46368 -17.78503 -16.91713 -16.83866 -16.30015 -15.69564 -14.99601 -14.67948 -14.56979 -14.47785 -14.32647 -13.87727 -13.60152 -13.36174 -13.12455 -12.79987 -12.68318 -12.28849 -12.04342 -11.78889 -11.62016 -11.59730 -11.55690 -11.31386 -11.13477 -11.02438 -10.63790 -10.57513 -10.42535 -10.37304 -10.07986 -10.00556 -9.87162 -9.82823 -9.57903 -9.29937 -9.23422 -8.60254 -8.07272 -6.11379 -4.10176 1.72610 2.08785 2.41497 3.15482 3.25863 3.33383 3.35393 3.43693 3.63324 3.84457 4.38510 4.47124 4.51819 4.61842 4.63641 4.69102 4.79581 4.81192 4.92663 4.95410 4.98918 5.07215 5.21364 5.22846 5.28082 5.37390 5.40602 5.45143 5.48997 5.52206 5.59808 5.74677 5.80263 5.88395 5.94381 6.01138 6.08064 6.19512 6.21736 6.24710 6.30941 6.32498 6.49792 6.63299 6.84560 7.13696 7.26347 7.35175 7.68081 8.43298 8.92306 9.09114 9.50504 11.01683 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.004109 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.646052 B = 6812.350471 C = 7532.385948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.138 4.138 3 C 0.067 3.933 4 N -0.418 5.418 5 C 0.335 3.665 6 N -0.318 5.318 7 N -0.295 5.295 8 C 0.210 3.790 9 C -0.022 4.022 10 C -0.004 4.004 11 C -0.520 4.520 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.899 5.899 15 Si 0.876 3.124 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.269 1.269 19 N -0.469 5.469 20 C 0.144 3.856 21 C -0.179 4.179 22 C -0.180 4.180 23 C -0.159 4.159 24 C 0.036 3.964 25 C -0.166 4.166 26 C -0.211 4.211 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.016 0.984 35 H 0.019 0.981 36 H 0.264 0.736 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.131 0.869 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.317 -15.890 8.613 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.157 4.157 3 C -0.059 4.059 4 N -0.140 5.140 5 C -0.022 4.022 6 N -0.162 5.162 7 N -0.133 5.133 8 C -0.058 4.058 9 C -0.061 4.061 10 C -0.042 4.042 11 C -0.558 4.558 12 H 0.094 0.906 13 C -0.129 4.129 14 N -0.538 5.538 15 Si 0.704 3.296 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.194 1.194 19 N -0.163 5.163 20 C 0.021 3.979 21 C -0.198 4.198 22 C -0.217 4.217 23 C -0.196 4.196 24 C -0.073 4.073 25 C -0.204 4.204 26 C -0.249 4.249 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.034 0.966 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.149 0.851 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.126 0.874 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.263 -15.103 9.388 24.098 hybrid contribution -0.964 -0.101 -1.425 1.723 sum -17.227 -15.204 7.963 24.317 Atomic orbital electron populations 1.23839 0.95709 1.02190 1.00769 1.22755 0.95488 0.97930 0.99520 1.21680 0.93981 0.96240 0.94042 1.58313 1.09161 1.43350 1.03140 1.22224 0.92414 0.92752 0.94774 1.74547 1.13807 1.02462 1.25358 1.74033 1.04525 1.24273 1.10495 1.25593 0.98364 0.83377 0.98417 1.20223 0.88118 1.01655 0.96152 1.19578 0.98055 0.95299 0.91294 1.21004 0.92956 1.37470 1.04388 0.90606 1.24939 0.96221 0.95188 0.96596 1.69895 1.27786 1.41126 1.14974 0.86840 0.85159 0.79671 0.77929 1.20094 1.21328 1.19438 1.46209 1.20961 1.17726 1.31432 1.21411 1.02825 0.86539 0.87126 1.22754 1.04120 0.98796 0.94129 1.23120 0.92741 1.01719 1.04122 1.22942 0.98005 1.00829 0.97863 1.22499 0.90958 1.02815 0.90992 1.23185 1.02679 0.93806 1.00721 1.23668 0.96737 1.00548 1.03993 0.87858 0.88493 0.86621 0.91785 0.88794 0.88749 0.90625 0.96560 0.96288 0.92617 0.88023 0.88372 0.86483 0.88530 0.88777 0.88032 0.88318 0.85141 0.88421 0.88117 0.87428 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 12.61 29.01 0.37 -0.94 16 2 C -0.14 -1.13 7.13 -36.03 -0.26 -1.39 16 3 C 0.07 0.73 5.02 -4.97 -0.02 0.71 16 4 N -0.42 -5.28 4.60 -168.31 -0.77 -6.05 16 5 C 0.33 5.40 6.76 -318.88 -2.15 3.25 16 6 N -0.32 -6.08 11.07 30.31 0.34 -5.74 16 7 N -0.29 -6.13 12.18 32.99 0.40 -5.73 16 8 C 0.21 3.97 7.32 -154.01 -1.13 2.84 16 9 C -0.02 -0.42 5.53 -27.88 -0.15 -0.58 16 10 C 0.00 -0.09 4.02 -27.88 -0.11 -0.20 16 11 C -0.52 -14.18 9.66 -34.44 -0.33 -14.52 16 12 H 0.08 2.19 7.99 -52.48 -0.42 1.77 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 15 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 19 N -0.47 -7.48 2.81 -114.09 -0.32 -7.80 16 20 C 0.14 1.80 5.96 -4.04 -0.02 1.78 16 21 C -0.18 -2.29 5.04 -90.62 -0.46 -2.75 16 22 C -0.18 -1.79 8.63 -26.73 -0.23 -2.02 16 23 C -0.16 -1.73 10.25 -26.73 -0.27 -2.00 16 24 C 0.04 0.42 5.78 -67.71 -0.39 0.03 16 25 C -0.17 -1.47 9.81 -26.73 -0.26 -1.73 16 26 C -0.21 -2.02 9.04 -26.73 -0.24 -2.26 16 27 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 28 H 0.10 0.67 7.14 -52.49 -0.37 0.29 16 29 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.06 0.74 5.81 -51.93 -0.30 0.44 16 31 H 0.09 1.11 4.76 -51.93 -0.25 0.87 16 32 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 33 H 0.08 1.34 7.40 -51.93 -0.38 0.95 16 34 H 0.02 0.37 5.46 -51.93 -0.28 0.09 16 35 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.10 1.21 7.44 -51.93 -0.39 0.82 16 38 H 0.10 1.04 7.82 -51.93 -0.41 0.63 16 39 H 0.12 1.92 6.48 -51.93 -0.34 1.58 16 40 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.13 1.75 7.39 -51.93 -0.38 1.37 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.10 0.85 6.35 -51.93 -0.33 0.52 16 47 H 0.11 0.98 3.31 -51.93 -0.17 0.81 16 48 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -31.74 377.11 -11.73 -43.47 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.38 Total: 3.39 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -5.78 Total: -17.82 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.42 Total: -51.56 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.74 -11.73 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123696672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.843 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds