Wall clock time and date at job start Tue Mar 31 2020 11:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99872 * 2 1 4 4 N 1.46908 * 109.47200 * 127.97597 * 3 2 1 5 5 C 1.38573 * 111.00124 * 157.87708 * 4 3 2 6 6 N 1.31218 * 126.47135 * 105.24185 * 5 4 3 7 7 N 1.28534 * 109.85814 * 179.82382 * 6 5 4 8 8 C 1.30292 * 110.05399 * 0.44780 * 7 6 5 9 9 C 1.50701 * 126.34892 * 179.76339 * 8 7 6 10 10 C 1.53006 * 109.47084 * 269.96315 * 9 8 7 11 11 C 1.50695 * 109.47030 * 179.97438 * 10 9 8 12 12 H 1.08010 * 119.99855 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00381 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00316 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99377 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47188 * 90.00097 * 15 13 11 17 17 H 1.48508 * 109.46759 * 209.99960 * 15 13 11 18 18 H 1.48503 * 109.47194 * 329.99533 * 15 13 11 19 19 N 1.36454 * 126.47284 * 285.55100 * 5 4 3 20 20 C 1.46500 * 127.13767 * 0.02562 * 19 5 4 21 21 C 1.53004 * 109.46978 * 95.95308 * 20 19 5 22 22 C 1.52998 * 117.49908 * 240.07301 * 21 20 19 23 23 C 1.52996 * 60.00400 * 252.51621 * 22 21 20 24 24 C 1.46897 * 110.99616 * 281.83474 * 4 3 2 25 25 C 1.52998 * 117.50453 * 69.15488 * 24 4 3 26 26 C 1.53001 * 60.00105 * 252.51165 * 25 24 4 27 27 H 1.07995 * 120.00171 * 185.66034 * 1 2 3 28 28 H 1.07998 * 119.99858 * 5.66019 * 1 2 3 29 29 H 1.08006 * 119.99973 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47363 * 7.97441 * 3 2 1 31 31 H 1.09001 * 109.47035 * 247.96959 * 3 2 1 32 32 H 1.09006 * 109.46811 * 29.95757 * 9 8 7 33 33 H 1.08991 * 109.47329 * 149.96191 * 9 8 7 34 34 H 1.08992 * 109.46861 * 299.99672 * 10 9 8 35 35 H 1.08999 * 109.46802 * 59.99698 * 10 9 8 36 36 H 0.97002 * 119.99877 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.46943 * 215.95424 * 20 19 5 38 38 H 1.08994 * 109.46935 * 335.95576 * 20 19 5 39 39 H 1.08992 * 115.55092 * 25.78785 * 21 20 19 40 40 H 1.08999 * 117.49576 * 0.02562 * 22 21 20 41 41 H 1.08999 * 117.50047 * 145.02071 * 22 21 20 42 42 H 1.09001 * 117.50152 * 252.51422 * 23 22 21 43 43 H 1.08997 * 117.50278 * 107.48792 * 23 22 21 44 44 H 1.08999 * 115.55867 * 214.84489 * 24 4 3 45 45 H 1.08998 * 117.49961 * 145.01493 * 25 24 4 46 46 H 1.09000 * 117.49438 * 0.02562 * 25 24 4 47 47 H 1.08995 * 117.50208 * 107.49027 * 26 25 24 48 48 H 1.09001 * 117.49441 * 252.50993 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0464 1.3031 1.0918 5 6 4.0633 2.2118 0.8462 6 7 4.2252 3.3772 1.4272 7 7 5.2741 3.9556 0.9611 8 6 5.8336 3.2040 0.0557 9 6 7.0786 3.5280 -0.7293 10 6 6.6942 4.2644 -2.0142 11 6 7.9391 4.5889 -2.7988 12 1 8.9078 4.2993 -2.4188 13 6 7.8418 5.2555 -4.0018 14 7 8.9282 5.5383 -4.6868 15 14 6.1664 5.7570 -4.6586 16 1 5.8263 7.1147 -4.1624 17 1 6.1995 5.7664 -6.1433 18 1 5.1418 4.7884 -4.1925 19 7 5.0822 2.0664 -0.0498 20 6 5.3212 0.9280 -0.9403 21 6 4.7243 1.2239 -2.3177 22 6 3.6399 0.2771 -2.8359 23 6 5.0408 0.2446 -3.4499 24 6 2.3996 1.5729 2.3828 25 6 1.4738 0.4941 2.9484 26 6 0.8848 1.7880 2.3828 27 1 -0.5400 -0.9307 0.0922 28 1 -0.5400 0.9307 -0.0922 29 1 1.8501 -0.9354 0.0004 30 1 1.3638 2.1286 0.1426 31 1 2.5790 1.4270 -0.9526 32 1 7.7319 4.1615 -0.1291 33 1 7.5996 2.6046 -0.9817 34 1 6.0409 3.6311 -2.6143 35 1 6.1732 5.1879 -1.7617 36 1 8.8596 6.0076 -5.5329 37 1 6.3940 0.7615 -1.0373 38 1 4.8513 0.0367 -0.5246 39 1 4.6364 2.2793 -2.5750 40 1 3.3514 -0.5563 -2.1953 41 1 2.8380 0.7097 -3.4341 42 1 5.1608 0.6558 -4.4522 43 1 5.6743 -0.6103 -3.2135 44 1 2.9902 2.1520 3.0927 45 1 1.4553 0.3634 4.0304 46 1 1.3450 -0.4161 2.3627 47 1 0.3681 1.7292 1.4249 48 1 0.4788 2.5086 3.0928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123696672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:45 Heat of formation + Delta-G solvation = 154.046565 kcal Electronic energy + Delta-G solvation = -27555.987198 eV Core-core repulsion = 24035.758851 eV Total energy + Delta-G solvation = -3520.228347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.08808 -40.37900 -38.78562 -36.24906 -35.60439 -34.98732 -34.59709 -33.43254 -30.32613 -28.70222 -27.63975 -26.51324 -23.80837 -23.52966 -23.29798 -23.12361 -22.55330 -21.42522 -20.86549 -20.29941 -19.17091 -18.62551 -17.85135 -17.52741 -16.71497 -16.34441 -16.12466 -15.52060 -15.43586 -15.37137 -15.00344 -14.95354 -14.85035 -14.57599 -14.14826 -13.72980 -13.50520 -13.08630 -13.00852 -12.97550 -12.72482 -12.55367 -12.38691 -12.30913 -12.24068 -12.06419 -11.84545 -11.79227 -11.60907 -11.41997 -11.40250 -11.34387 -11.06590 -10.94473 -10.79098 -10.46802 -10.18833 -9.28814 -8.31994 -6.34901 0.64487 1.08437 1.28737 1.31812 1.40348 1.40728 1.75749 2.30452 2.48995 2.76853 3.00667 3.03470 3.36797 3.53002 3.71459 3.77289 3.80103 3.88254 3.93481 3.96035 4.04345 4.11782 4.18654 4.21719 4.26555 4.41285 4.49168 4.53701 4.61794 4.66888 4.74822 4.77982 4.79644 4.92435 4.97415 4.98186 5.07521 5.09035 5.13210 5.22556 5.26178 5.28953 5.41236 5.46510 5.55179 5.63184 5.69257 5.88265 6.16083 6.23216 6.71496 7.29102 7.69796 8.84188 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.004109 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.646052 B = 6812.350471 C = 7532.385948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.148 4.148 3 C 0.068 3.932 4 N -0.407 5.407 5 C 0.352 3.648 6 N -0.352 5.352 7 N -0.329 5.329 8 C 0.198 3.802 9 C -0.010 4.010 10 C 0.007 3.993 11 C -0.523 4.523 12 H 0.048 0.952 13 C 0.019 3.981 14 N -0.942 5.942 15 Si 0.936 3.064 16 H -0.276 1.276 17 H -0.278 1.278 18 H -0.256 1.256 19 N -0.464 5.464 20 C 0.142 3.858 21 C -0.201 4.201 22 C -0.154 4.154 23 C -0.157 4.157 24 C 0.003 3.997 25 C -0.138 4.138 26 C -0.205 4.205 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.024 0.976 35 H 0.003 0.997 36 H 0.267 0.733 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.359 -18.892 8.741 28.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.058 4.058 4 N -0.130 5.130 5 C -0.006 4.006 6 N -0.196 5.196 7 N -0.168 5.168 8 C -0.071 4.071 9 C -0.049 4.049 10 C -0.032 4.032 11 C -0.561 4.561 12 H 0.066 0.934 13 C -0.179 4.179 14 N -0.583 5.583 15 Si 0.761 3.239 16 H -0.202 1.202 17 H -0.203 1.203 18 H -0.180 1.180 19 N -0.157 5.157 20 C 0.021 3.979 21 C -0.220 4.220 22 C -0.191 4.191 23 C -0.194 4.194 24 C -0.106 4.106 25 C -0.176 4.176 26 C -0.243 4.243 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.147 0.853 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.042 0.958 35 H 0.021 0.979 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.138 0.862 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.319 -18.128 9.520 28.151 hybrid contribution -0.059 0.787 -1.407 1.613 sum -19.379 -17.342 8.113 27.241 Atomic orbital electron populations 1.24037 0.95275 1.03162 0.98284 1.22605 0.95705 0.96652 1.01697 1.21724 0.93364 0.97883 0.92805 1.58616 1.09013 1.41208 1.04132 1.22655 0.92694 0.92160 0.93048 1.74468 1.13974 1.04175 1.27013 1.73925 1.05551 1.25732 1.11580 1.25211 0.98557 0.84648 0.98701 1.19942 0.88664 1.01898 0.94434 1.19391 0.96033 0.95114 0.92621 1.21278 0.93404 1.36761 1.04645 0.93392 1.25731 0.99756 0.95383 0.97050 1.70019 1.30052 1.42496 1.15713 0.85874 0.80996 0.79331 0.77676 1.20157 1.20325 1.18029 1.46303 1.20183 1.17659 1.31537 1.21697 1.03569 0.86042 0.86592 1.22550 1.07375 0.97273 0.94846 1.23196 0.91978 1.00806 1.03116 1.23040 0.99324 1.00524 0.96530 1.22521 0.91912 1.05626 0.90498 1.23269 0.99241 0.93421 1.01642 1.23729 0.94782 1.01294 1.04503 0.85737 0.88597 0.85330 0.92755 0.89810 0.89546 0.88859 0.95761 0.97870 0.92376 0.87513 0.85781 0.90432 0.86055 0.88694 0.89171 0.86248 0.87571 0.87032 0.86874 0.86818 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 12.61 67.78 0.85 -0.79 16 2 C -0.15 -1.86 7.13 25.64 0.18 -1.67 16 3 C 0.07 1.34 5.02 85.55 0.43 1.77 16 4 N -0.41 -9.65 4.60 -686.40 -3.16 -12.81 16 5 C 0.35 11.24 6.76 260.11 1.76 13.00 16 6 N -0.35 -13.80 11.07 -58.01 -0.64 -14.44 16 7 N -0.33 -14.13 12.18 -49.53 -0.60 -14.74 16 8 C 0.20 7.61 7.32 137.64 1.01 8.62 16 9 C -0.01 -0.38 5.53 29.85 0.16 -0.22 16 10 C 0.01 0.33 4.02 29.85 0.12 0.45 16 11 C -0.52 -29.29 9.66 25.60 0.25 -29.04 16 12 H 0.05 2.89 7.99 -2.91 -0.02 2.86 16 13 C 0.02 1.08 5.47 84.66 0.46 1.54 16 14 N -0.94 -57.89 13.96 21.45 0.30 -57.59 16 15 Si 0.94 44.77 27.47 68.60 1.88 46.65 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 18 H -0.26 -11.58 6.54 99.48 0.65 -10.93 16 19 N -0.46 -14.58 2.81 -514.86 -1.45 -16.02 16 20 C 0.14 3.32 5.96 86.38 0.52 3.84 16 21 C -0.20 -4.87 5.04 -10.79 -0.05 -4.92 16 22 C -0.15 -2.61 8.63 30.59 0.26 -2.35 16 23 C -0.16 -3.07 10.25 30.60 0.31 -2.75 16 24 C 0.00 0.06 5.78 44.92 0.26 0.32 16 25 C -0.14 -2.01 9.81 30.59 0.30 -1.71 16 26 C -0.20 -3.47 9.04 30.60 0.28 -3.19 16 27 H 0.12 0.75 8.06 -2.91 -0.02 0.73 16 28 H 0.10 0.98 7.14 -2.91 -0.02 0.96 16 29 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.05 1.17 5.81 -2.39 -0.01 1.16 16 31 H 0.08 1.82 4.76 -2.39 -0.01 1.81 16 32 H 0.09 3.54 8.14 -2.38 -0.02 3.52 16 33 H 0.09 3.32 7.40 -2.39 -0.02 3.30 16 34 H 0.02 1.11 5.46 -2.39 -0.01 1.10 16 35 H 0.00 0.15 7.57 -2.39 -0.02 0.13 16 36 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.11 2.37 7.44 -2.39 -0.02 2.35 16 38 H 0.12 2.23 7.82 -2.39 -0.02 2.21 16 39 H 0.08 2.54 6.48 -2.39 -0.02 2.52 16 40 H 0.12 1.48 8.03 -2.39 -0.02 1.46 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.11 2.89 7.39 -2.39 -0.02 2.87 16 45 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.11 1.41 6.35 -2.39 -0.02 1.40 16 47 H 0.11 1.78 3.31 -2.39 -0.01 1.77 16 48 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -71.51 377.11 4.34 -67.17 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.90 Total: 18.89 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 7.10 Total: -17.11 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -5.55 Total: -115.60 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -71.51 4.34 -67.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123696672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.221 kcal (2) G-P(sol) polarization free energy of solvation -71.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds