Wall clock time and date at job start Tue Mar 31 2020 10:53:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08997 * 109.47301 * 2 1
4 4 C 1.53006 * 109.47040 * 239.99565 * 2 1 3
5 5 C 1.52998 * 109.46959 * 173.33151 * 4 2 1
6 6 H 1.08998 * 109.47106 * 306.47874 * 5 4 2
7 7 C 1.53001 * 109.46921 * 186.47886 * 5 4 2
8 8 N 1.46498 * 109.47456 * 66.47918 * 5 4 2
9 9 C 1.34770 * 120.00195 * 196.81254 * 8 5 4
10 10 O 1.21273 * 120.00310 * 5.66293 * 9 8 5
11 11 C 1.50701 * 120.00001 * 185.66994 * 9 8 5
12 12 C 1.52993 * 109.54701 * 63.17351 * 11 9 8
13 13 F 1.39902 * 109.47315 * 300.00203 * 12 11 9
14 14 C 1.53182 * 109.53988 * 302.99768 * 11 9 8
15 15 C 1.53282 * 109.06568 * 297.02892 * 14 11 9
16 16 O 1.42902 * 109.46027 * 302.45018 * 15 14 11
17 17 C 1.42902 * 114.10157 * 61.15359 * 16 15 14
18 18 C 1.53097 * 109.41396 * 298.84368 * 17 16 15
19 19 N 1.46505 * 109.46950 * 120.00159 * 2 1 3
20 20 C 1.36940 * 119.99635 * 275.82774 * 19 2 1
21 21 H 1.08003 * 119.99846 * 344.16248 * 20 19 2
22 22 C 1.38812 * 119.99975 * 164.16583 * 20 19 2
23 23 N 1.31619 * 119.99522 * 357.01413 * 22 20 19
24 24 Si 1.86799 * 119.99861 * 177.01496 * 22 20 19
25 25 H 1.48495 * 109.47193 * 59.99990 * 24 22 20
26 26 H 1.48501 * 109.46908 * 179.97438 * 24 22 20
27 27 H 1.48500 * 109.46893 * 299.99606 * 24 22 20
28 28 H 1.08999 * 109.46973 * 300.00208 * 1 2 3
29 29 H 1.09000 * 109.47216 * 60.00137 * 1 2 3
30 30 H 1.09008 * 109.47195 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.47090 * 293.33085 * 4 2 1
32 32 H 1.09001 * 109.46600 * 53.33526 * 4 2 1
33 33 H 1.09001 * 109.47048 * 179.97438 * 7 5 4
34 34 H 1.08998 * 109.47220 * 299.99918 * 7 5 4
35 35 H 1.09005 * 109.47209 * 60.00318 * 7 5 4
36 36 H 0.97002 * 119.99896 * 16.80527 * 8 5 4
37 37 H 1.08996 * 109.47252 * 60.00353 * 12 11 9
38 38 H 1.09001 * 109.47541 * 180.02562 * 12 11 9
39 39 H 1.09002 * 109.52411 * 57.02429 * 14 11 9
40 40 H 1.09007 * 109.52437 * 177.20811 * 14 11 9
41 41 H 1.09001 * 109.45714 * 182.44873 * 15 14 11
42 42 H 1.09006 * 109.46360 * 62.45016 * 15 14 11
43 43 H 1.09004 * 109.48166 * 178.86071 * 17 16 15
44 44 H 1.08995 * 109.48605 * 58.83014 * 17 16 15
45 45 H 1.08994 * 109.51820 * 297.70004 * 18 17 16
46 46 H 1.09004 * 109.57090 * 177.54290 * 18 17 16
47 47 H 0.96997 * 120.00384 * 95.83391 * 19 2 1
48 48 H 0.97004 * 119.99189 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7214 -1.2492
5 6 3.5608 -0.5779 -1.3358
6 1 3.8301 0.4766 -1.2776
7 6 4.0529 -1.1575 -2.6635
8 7 4.1837 -1.3030 -0.2257
9 6 5.4648 -1.0516 0.1090
10 8 6.0700 -0.1550 -0.4393
11 6 6.1453 -1.8847 1.1644
12 6 6.2299 -3.3379 0.6937
13 9 4.9401 -3.8318 0.4708
14 6 5.3441 -1.8142 2.4681
15 6 5.3329 -0.3664 2.9713
16 8 6.6766 0.0850 3.1526
17 6 7.4587 0.0843 1.9566
18 6 7.5565 -1.3437 1.4133
19 7 2.0183 -0.6907 1.1962
20 6 2.1330 -0.0117 2.3799
21 1 2.1148 1.0681 2.3870
22 6 2.2726 -0.7114 3.5706
23 7 2.2358 -2.0271 3.5689
24 14 2.5127 0.2143 5.1752
25 1 1.3456 1.1007 5.4147
26 1 2.6344 -0.7558 6.2929
27 1 3.7483 1.0339 5.0937
28 1 -0.3633 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3634 -1.0277 0.0005
31 1 1.7774 -1.7777 -1.1915
32 1 1.5825 -0.2810 -2.1352
33 1 5.1363 -1.0549 -2.7254
34 1 3.7836 -2.2121 -2.7217
35 1 3.5895 -0.6180 -3.4896
36 1 3.6741 -1.9640 0.2686
37 1 6.8029 -3.3871 -0.2323
38 1 6.7218 -3.9395 1.4580
39 1 4.3221 -2.1468 2.2861
40 1 5.8090 -2.4560 3.2166
41 1 4.8012 -0.3164 3.9216
42 1 4.8316 0.2683 2.2405
43 1 8.4585 0.4591 2.1759
44 1 6.9855 0.7248 1.2123
45 1 8.0661 -1.9758 2.1404
46 1 8.1158 -1.3409 0.4777
47 1 2.2605 -1.6288 1.1498
48 1 2.3338 -2.5160 4.4010
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001135476963.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:53:24
Heat of formation + Delta-G solvation = -129.875793 kcal
Electronic energy + Delta-G solvation = -30818.514107 eV
Core-core repulsion = 26822.911987 eV
Total energy + Delta-G solvation = -3995.602120 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.195 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-47.48302 -40.29662 -38.04411 -36.70833 -34.27740 -34.04579 -32.41655 -30.75029
-30.11844 -28.53738 -27.51988 -26.32769 -23.84072 -23.48581 -23.08416 -21.94458
-20.37839 -20.15968 -18.86255 -17.21660 -16.40630 -16.30594 -15.91115 -15.67861
-15.38967 -15.18300 -14.81254 -14.43395 -14.14977 -14.00338 -13.81906 -13.72312
-13.09590 -13.08379 -12.90368 -12.65907 -12.15919 -12.05791 -11.90540 -11.79937
-11.68708 -11.62574 -11.23000 -11.08029 -10.97027 -10.83091 -10.70835 -10.65870
-10.47220 -10.26162 -10.06712 -9.88442 -9.78539 -9.76129 -9.22204 -8.86280
-8.79096 -8.38105 -6.94816 -5.84758 -3.14288 3.09699 3.37573 3.43556
3.47607 3.67828 4.48798 4.51439 4.61259 4.77622 4.82441 5.05833
5.09540 5.29866 5.36879 5.40978 5.46785 5.52534 5.56277 5.67925
5.68938 5.82002 5.88348 5.96360 6.01106 6.03196 6.05429 6.12180
6.14618 6.23424 6.26158 6.34795 6.36086 6.44255 6.54371 6.59262
6.60892 6.84778 6.89478 6.98964 7.08428 7.16057 7.69931 7.84763
8.13699 8.37463 8.77693 9.44548 9.99064 10.38278 11.35511
Molecular weight = 316.19amu
Principal moments of inertia in cm(-1)
A = 0.010016 B = 0.008934 C = 0.005949
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2794.840790 B = 3133.246215 C = 4705.765725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.169 3.831
3 H 0.047 0.953
4 C -0.134 4.134
5 C 0.149 3.851
6 H 0.079 0.921
7 C -0.162 4.162
8 N -0.691 5.691
9 C 0.532 3.468
10 O -0.556 6.556
11 C -0.115 4.115
12 C 0.078 3.922
13 F -0.206 7.206
14 C -0.142 4.142
15 C 0.070 3.930
16 O -0.396 6.396
17 C 0.055 3.945
18 C -0.125 4.125
19 N -0.715 5.715
20 C -0.231 4.231
21 H 0.064 0.936
22 C -0.001 4.001
23 N -0.922 5.922
24 Si 0.879 3.121
25 H -0.287 1.287
26 H -0.289 1.289
27 H -0.278 1.278
28 H 0.053 0.947
29 H 0.033 0.967
30 H 0.045 0.955
31 H 0.065 0.935
32 H 0.074 0.926
33 H 0.056 0.944
34 H 0.054 0.946
35 H 0.060 0.940
36 H 0.410 0.590
37 H 0.073 0.927
38 H 0.082 0.918
39 H 0.124 0.876
40 H 0.065 0.935
41 H 0.097 0.903
42 H 0.065 0.935
43 H 0.083 0.917
44 H 0.071 0.929
45 H 0.073 0.927
46 H 0.076 0.924
47 H 0.374 0.626
48 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.471 -2.255 -8.576 10.978
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.059 3.941
3 H 0.065 0.935
4 C -0.172 4.172
5 C 0.045 3.955
6 H 0.097 0.903
7 C -0.220 4.220
8 N -0.345 5.345
9 C 0.317 3.683
10 O -0.436 6.436
11 C -0.119 4.119
12 C 0.023 3.977
13 F -0.187 7.187
14 C -0.179 4.179
15 C -0.006 4.006
16 O -0.315 6.315
17 C -0.022 4.022
18 C -0.163 4.163
19 N -0.358 5.358
20 C -0.362 4.362
21 H 0.082 0.918
22 C -0.197 4.197
23 N -0.570 5.570
24 Si 0.710 3.290
25 H -0.214 1.214
26 H -0.215 1.215
27 H -0.204 1.204
28 H 0.072 0.928
29 H 0.052 0.948
30 H 0.064 0.936
31 H 0.084 0.916
32 H 0.093 0.907
33 H 0.076 0.924
34 H 0.073 0.927
35 H 0.079 0.921
36 H 0.251 0.749
37 H 0.091 0.909
38 H 0.101 0.899
39 H 0.142 0.858
40 H 0.084 0.916
41 H 0.115 0.885
42 H 0.083 0.917
43 H 0.101 0.899
44 H 0.089 0.911
45 H 0.092 0.908
46 H 0.094 0.906
47 H 0.210 0.790
48 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 6.873 -1.503 -8.660 11.157
hybrid contribution -0.363 -0.347 1.036 1.151
sum 6.510 -1.851 -7.624 10.194
Atomic orbital electron populations
1.22392 0.99205 1.00760 0.99822 1.20327 0.91686 0.95606 0.86446
0.93535 1.22190 0.93713 1.01799 0.99505 1.20821 0.92384 0.96951
0.85389 0.90322 1.22191 1.01730 1.00999 0.97124 1.46226 1.11993
1.42371 1.33943 1.20033 0.82261 0.83742 0.82237 1.90576 1.65571
1.32044 1.55400 1.21601 0.98123 0.94902 0.97278 1.21941 0.80812
0.92929 1.01996 1.92770 1.40919 1.88722 1.96279 1.22384 1.03367
0.99153 0.93038 1.22784 0.81467 0.93337 1.02987 1.87865 1.24638
1.86799 1.32248 1.22628 0.95965 0.95354 0.88243 1.21916 0.93900
0.98677 1.01778 1.42442 1.77216 1.10904 1.05274 1.19067 1.42017
0.90744 0.84404 0.91816 1.24665 1.02999 0.95346 0.96680 1.69620
1.56566 1.04520 1.26273 0.86821 0.78323 0.79289 0.84605 1.21435
1.21508 1.20428 0.92760 0.94839 0.93593 0.91588 0.90740 0.92443
0.92737 0.92136 0.74924 0.90893 0.89936 0.85820 0.91620 0.88465
0.91675 0.89892 0.91051 0.90841 0.90554 0.79049 0.93391
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.80 9.48 37.16 0.35 -2.45 16
2 C 0.17 3.07 2.87 -67.92 -0.20 2.88 16
3 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16
4 C -0.13 -2.00 4.39 -26.73 -0.12 -2.12 16
5 C 0.15 2.35 2.53 -67.93 -0.17 2.18 16
6 H 0.08 1.38 7.75 -51.93 -0.40 0.98 16
7 C -0.16 -2.18 9.35 37.16 0.35 -1.83 16
8 N -0.69 -12.00 3.65 -53.81 -0.20 -12.19 16
9 C 0.53 9.57 4.87 -10.99 -0.05 9.51 16
10 O -0.56 -10.97 13.36 5.56 0.07 -10.90 16
11 C -0.12 -1.87 0.53 -155.48 -0.08 -1.96 16
12 C 0.08 1.07 6.36 37.15 0.24 1.31 16
13 F -0.21 -3.31 15.01 2.25 0.03 -3.27 16
14 C -0.14 -2.68 4.69 -26.49 -0.12 -2.80 16
15 C 0.07 1.48 5.36 37.30 0.20 1.68 16
16 O -0.40 -7.94 10.77 -35.23 -0.38 -8.32 16
17 C 0.05 0.93 6.55 37.21 0.24 1.17 16
18 C -0.12 -1.84 4.56 -26.59 -0.12 -1.96 16
19 N -0.71 -15.39 3.85 -53.42 -0.21 -15.60 16
20 C -0.23 -5.63 8.86 -15.06 -0.13 -5.76 16
21 H 0.06 1.61 7.83 -52.48 -0.41 1.20 16
22 C 0.00 -0.01 3.97 -17.43 -0.07 -0.08 16
23 N -0.92 -23.83 11.95 55.49 0.66 -23.16 16
24 Si 0.88 20.88 27.34 -169.99 -4.65 16.23 16
25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
27 H -0.28 -6.60 6.68 56.52 0.38 -6.22 16
28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16
29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16
30 H 0.04 0.81 8.14 -51.92 -0.42 0.38 16
31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16
32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
33 H 0.06 0.84 7.71 -51.93 -0.40 0.44 16
34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.41 7.57 3.87 -40.82 -0.16 7.41 16
37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
39 H 0.12 2.62 5.53 -51.93 -0.29 2.33 16
40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
41 H 0.10 2.24 4.42 -51.93 -0.23 2.01 16
42 H 0.06 1.50 6.67 -51.93 -0.35 1.15 16
43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
44 H 0.07 1.35 5.93 -51.93 -0.31 1.04 16
45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
46 H 0.08 1.03 7.98 -51.93 -0.41 0.62 16
47 H 0.37 8.42 5.82 -40.82 -0.24 8.18 16
48 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16
LS Contribution 358.81 15.07 5.41 5.41
Total: -1.00 -26.71 358.81 -6.78 -33.49
By element:
Atomic # 1 Polarization: 26.38 SS G_CDS: -7.85 Total: 18.54 kcal
Atomic # 6 Polarization: -0.54 SS G_CDS: 0.31 Total: -0.23 kcal
Atomic # 7 Polarization: -51.21 SS G_CDS: 0.26 Total: -50.95 kcal
Atomic # 8 Polarization: -18.91 SS G_CDS: -0.30 Total: -19.22 kcal
Atomic # 9 Polarization: -3.31 SS G_CDS: 0.03 Total: -3.27 kcal
Atomic # 14 Polarization: 20.88 SS G_CDS: -4.65 Total: 16.23 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -26.71 -6.78 -33.49 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135476963.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.381 kcal
(2) G-P(sol) polarization free energy of solvation -26.710 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.092 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.495 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.876 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds