Wall clock time and date at job start Tue Mar 31 2020 10:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47301 * 2 1 4 4 C 1.53006 * 109.47040 * 239.99565 * 2 1 3 5 5 C 1.52998 * 109.46959 * 173.33151 * 4 2 1 6 6 H 1.08998 * 109.47106 * 306.47874 * 5 4 2 7 7 C 1.53001 * 109.46921 * 186.47886 * 5 4 2 8 8 N 1.46498 * 109.47456 * 66.47918 * 5 4 2 9 9 C 1.34770 * 120.00195 * 196.81254 * 8 5 4 10 10 O 1.21273 * 120.00310 * 5.66293 * 9 8 5 11 11 C 1.50701 * 120.00001 * 185.66994 * 9 8 5 12 12 C 1.52993 * 109.54701 * 63.17351 * 11 9 8 13 13 F 1.39902 * 109.47315 * 300.00203 * 12 11 9 14 14 C 1.53182 * 109.53988 * 302.99768 * 11 9 8 15 15 C 1.53282 * 109.06568 * 297.02892 * 14 11 9 16 16 O 1.42902 * 109.46027 * 302.45018 * 15 14 11 17 17 C 1.42902 * 114.10157 * 61.15359 * 16 15 14 18 18 C 1.53097 * 109.41396 * 298.84368 * 17 16 15 19 19 N 1.46505 * 109.46950 * 120.00159 * 2 1 3 20 20 C 1.36940 * 119.99635 * 275.82774 * 19 2 1 21 21 H 1.08003 * 119.99846 * 344.16248 * 20 19 2 22 22 C 1.38812 * 119.99975 * 164.16583 * 20 19 2 23 23 N 1.31619 * 119.99522 * 357.01413 * 22 20 19 24 24 Si 1.86799 * 119.99861 * 177.01496 * 22 20 19 25 25 H 1.48495 * 109.47193 * 59.99990 * 24 22 20 26 26 H 1.48501 * 109.46908 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46893 * 299.99606 * 24 22 20 28 28 H 1.08999 * 109.46973 * 300.00208 * 1 2 3 29 29 H 1.09000 * 109.47216 * 60.00137 * 1 2 3 30 30 H 1.09008 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47090 * 293.33085 * 4 2 1 32 32 H 1.09001 * 109.46600 * 53.33526 * 4 2 1 33 33 H 1.09001 * 109.47048 * 179.97438 * 7 5 4 34 34 H 1.08998 * 109.47220 * 299.99918 * 7 5 4 35 35 H 1.09005 * 109.47209 * 60.00318 * 7 5 4 36 36 H 0.97002 * 119.99896 * 16.80527 * 8 5 4 37 37 H 1.08996 * 109.47252 * 60.00353 * 12 11 9 38 38 H 1.09001 * 109.47541 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.52411 * 57.02429 * 14 11 9 40 40 H 1.09007 * 109.52437 * 177.20811 * 14 11 9 41 41 H 1.09001 * 109.45714 * 182.44873 * 15 14 11 42 42 H 1.09006 * 109.46360 * 62.45016 * 15 14 11 43 43 H 1.09004 * 109.48166 * 178.86071 * 17 16 15 44 44 H 1.08995 * 109.48605 * 58.83014 * 17 16 15 45 45 H 1.08994 * 109.51820 * 297.70004 * 18 17 16 46 46 H 1.09004 * 109.57090 * 177.54290 * 18 17 16 47 47 H 0.96997 * 120.00384 * 95.83391 * 19 2 1 48 48 H 0.97004 * 119.99189 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5608 -0.5779 -1.3358 6 1 3.8301 0.4766 -1.2776 7 6 4.0529 -1.1575 -2.6635 8 7 4.1837 -1.3030 -0.2257 9 6 5.4648 -1.0516 0.1090 10 8 6.0700 -0.1550 -0.4393 11 6 6.1453 -1.8847 1.1644 12 6 6.2299 -3.3379 0.6937 13 9 4.9401 -3.8318 0.4708 14 6 5.3441 -1.8142 2.4681 15 6 5.3329 -0.3664 2.9713 16 8 6.6766 0.0850 3.1526 17 6 7.4587 0.0843 1.9566 18 6 7.5565 -1.3437 1.4133 19 7 2.0183 -0.6907 1.1962 20 6 2.1330 -0.0117 2.3799 21 1 2.1148 1.0681 2.3870 22 6 2.2726 -0.7114 3.5706 23 7 2.2358 -2.0271 3.5689 24 14 2.5127 0.2143 5.1752 25 1 1.3456 1.1007 5.4147 26 1 2.6344 -0.7558 6.2929 27 1 3.7483 1.0339 5.0937 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7774 -1.7777 -1.1915 32 1 1.5825 -0.2810 -2.1352 33 1 5.1363 -1.0549 -2.7254 34 1 3.7836 -2.2121 -2.7217 35 1 3.5895 -0.6180 -3.4896 36 1 3.6741 -1.9640 0.2686 37 1 6.8029 -3.3871 -0.2323 38 1 6.7218 -3.9395 1.4580 39 1 4.3221 -2.1468 2.2861 40 1 5.8090 -2.4560 3.2166 41 1 4.8012 -0.3164 3.9216 42 1 4.8316 0.2683 2.2405 43 1 8.4585 0.4591 2.1759 44 1 6.9855 0.7248 1.2123 45 1 8.0661 -1.9758 2.1404 46 1 8.1158 -1.3409 0.4777 47 1 2.2605 -1.6288 1.1498 48 1 2.3338 -2.5160 4.4010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135476963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:24 Heat of formation + Delta-G solvation = -129.875793 kcal Electronic energy + Delta-G solvation = -30818.514107 eV Core-core repulsion = 26822.911987 eV Total energy + Delta-G solvation = -3995.602120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.48302 -40.29662 -38.04411 -36.70833 -34.27740 -34.04579 -32.41655 -30.75029 -30.11844 -28.53738 -27.51988 -26.32769 -23.84072 -23.48581 -23.08416 -21.94458 -20.37839 -20.15968 -18.86255 -17.21660 -16.40630 -16.30594 -15.91115 -15.67861 -15.38967 -15.18300 -14.81254 -14.43395 -14.14977 -14.00338 -13.81906 -13.72312 -13.09590 -13.08379 -12.90368 -12.65907 -12.15919 -12.05791 -11.90540 -11.79937 -11.68708 -11.62574 -11.23000 -11.08029 -10.97027 -10.83091 -10.70835 -10.65870 -10.47220 -10.26162 -10.06712 -9.88442 -9.78539 -9.76129 -9.22204 -8.86280 -8.79096 -8.38105 -6.94816 -5.84758 -3.14288 3.09699 3.37573 3.43556 3.47607 3.67828 4.48798 4.51439 4.61259 4.77622 4.82441 5.05833 5.09540 5.29866 5.36879 5.40978 5.46785 5.52534 5.56277 5.67925 5.68938 5.82002 5.88348 5.96360 6.01106 6.03196 6.05429 6.12180 6.14618 6.23424 6.26158 6.34795 6.36086 6.44255 6.54371 6.59262 6.60892 6.84778 6.89478 6.98964 7.08428 7.16057 7.69931 7.84763 8.13699 8.37463 8.77693 9.44548 9.99064 10.38278 11.35511 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.010016 B = 0.008934 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.840790 B = 3133.246215 C = 4705.765725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 H 0.047 0.953 4 C -0.134 4.134 5 C 0.149 3.851 6 H 0.079 0.921 7 C -0.162 4.162 8 N -0.691 5.691 9 C 0.532 3.468 10 O -0.556 6.556 11 C -0.115 4.115 12 C 0.078 3.922 13 F -0.206 7.206 14 C -0.142 4.142 15 C 0.070 3.930 16 O -0.396 6.396 17 C 0.055 3.945 18 C -0.125 4.125 19 N -0.715 5.715 20 C -0.231 4.231 21 H 0.064 0.936 22 C -0.001 4.001 23 N -0.922 5.922 24 Si 0.879 3.121 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.278 1.278 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.410 0.590 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.374 0.626 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.471 -2.255 -8.576 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.045 3.955 6 H 0.097 0.903 7 C -0.220 4.220 8 N -0.345 5.345 9 C 0.317 3.683 10 O -0.436 6.436 11 C -0.119 4.119 12 C 0.023 3.977 13 F -0.187 7.187 14 C -0.179 4.179 15 C -0.006 4.006 16 O -0.315 6.315 17 C -0.022 4.022 18 C -0.163 4.163 19 N -0.358 5.358 20 C -0.362 4.362 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.570 5.570 24 Si 0.710 3.290 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.204 1.204 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.251 0.749 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.210 0.790 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.873 -1.503 -8.660 11.157 hybrid contribution -0.363 -0.347 1.036 1.151 sum 6.510 -1.851 -7.624 10.194 Atomic orbital electron populations 1.22392 0.99205 1.00760 0.99822 1.20327 0.91686 0.95606 0.86446 0.93535 1.22190 0.93713 1.01799 0.99505 1.20821 0.92384 0.96951 0.85389 0.90322 1.22191 1.01730 1.00999 0.97124 1.46226 1.11993 1.42371 1.33943 1.20033 0.82261 0.83742 0.82237 1.90576 1.65571 1.32044 1.55400 1.21601 0.98123 0.94902 0.97278 1.21941 0.80812 0.92929 1.01996 1.92770 1.40919 1.88722 1.96279 1.22384 1.03367 0.99153 0.93038 1.22784 0.81467 0.93337 1.02987 1.87865 1.24638 1.86799 1.32248 1.22628 0.95965 0.95354 0.88243 1.21916 0.93900 0.98677 1.01778 1.42442 1.77216 1.10904 1.05274 1.19067 1.42017 0.90744 0.84404 0.91816 1.24665 1.02999 0.95346 0.96680 1.69620 1.56566 1.04520 1.26273 0.86821 0.78323 0.79289 0.84605 1.21435 1.21508 1.20428 0.92760 0.94839 0.93593 0.91588 0.90740 0.92443 0.92737 0.92136 0.74924 0.90893 0.89936 0.85820 0.91620 0.88465 0.91675 0.89892 0.91051 0.90841 0.90554 0.79049 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.48 37.16 0.35 -2.45 16 2 C 0.17 3.07 2.87 -67.92 -0.20 2.88 16 3 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 4 C -0.13 -2.00 4.39 -26.73 -0.12 -2.12 16 5 C 0.15 2.35 2.53 -67.93 -0.17 2.18 16 6 H 0.08 1.38 7.75 -51.93 -0.40 0.98 16 7 C -0.16 -2.18 9.35 37.16 0.35 -1.83 16 8 N -0.69 -12.00 3.65 -53.81 -0.20 -12.19 16 9 C 0.53 9.57 4.87 -10.99 -0.05 9.51 16 10 O -0.56 -10.97 13.36 5.56 0.07 -10.90 16 11 C -0.12 -1.87 0.53 -155.48 -0.08 -1.96 16 12 C 0.08 1.07 6.36 37.15 0.24 1.31 16 13 F -0.21 -3.31 15.01 2.25 0.03 -3.27 16 14 C -0.14 -2.68 4.69 -26.49 -0.12 -2.80 16 15 C 0.07 1.48 5.36 37.30 0.20 1.68 16 16 O -0.40 -7.94 10.77 -35.23 -0.38 -8.32 16 17 C 0.05 0.93 6.55 37.21 0.24 1.17 16 18 C -0.12 -1.84 4.56 -26.59 -0.12 -1.96 16 19 N -0.71 -15.39 3.85 -53.42 -0.21 -15.60 16 20 C -0.23 -5.63 8.86 -15.06 -0.13 -5.76 16 21 H 0.06 1.61 7.83 -52.48 -0.41 1.20 16 22 C 0.00 -0.01 3.97 -17.43 -0.07 -0.08 16 23 N -0.92 -23.83 11.95 55.49 0.66 -23.16 16 24 Si 0.88 20.88 27.34 -169.99 -4.65 16.23 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.60 6.68 56.52 0.38 -6.22 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.81 8.14 -51.92 -0.42 0.38 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.84 7.71 -51.93 -0.40 0.44 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.41 7.57 3.87 -40.82 -0.16 7.41 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.12 2.62 5.53 -51.93 -0.29 2.33 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.10 2.24 4.42 -51.93 -0.23 2.01 16 42 H 0.06 1.50 6.67 -51.93 -0.35 1.15 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.35 5.93 -51.93 -0.31 1.04 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.08 1.03 7.98 -51.93 -0.41 0.62 16 47 H 0.37 8.42 5.82 -40.82 -0.24 8.18 16 48 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -26.71 358.81 -6.78 -33.49 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -7.85 Total: 18.54 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 0.31 Total: -0.23 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.26 Total: -50.95 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.30 Total: -19.22 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.03 Total: -3.27 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.65 Total: 16.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -26.71 -6.78 -33.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135476963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.381 kcal (2) G-P(sol) polarization free energy of solvation -26.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds