Wall clock time and date at job start Tue Mar 31 2020 10:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47301 * 2 1 4 4 C 1.53006 * 109.47040 * 239.99565 * 2 1 3 5 5 C 1.52998 * 109.46959 * 173.33151 * 4 2 1 6 6 H 1.08998 * 109.47106 * 306.47874 * 5 4 2 7 7 C 1.53001 * 109.46921 * 186.47886 * 5 4 2 8 8 N 1.46498 * 109.47456 * 66.47918 * 5 4 2 9 9 C 1.34770 * 120.00195 * 196.81254 * 8 5 4 10 10 O 1.21273 * 120.00310 * 5.66293 * 9 8 5 11 11 C 1.50701 * 120.00001 * 185.66994 * 9 8 5 12 12 C 1.52993 * 109.54701 * 63.17351 * 11 9 8 13 13 F 1.39902 * 109.47315 * 300.00203 * 12 11 9 14 14 C 1.53182 * 109.53988 * 302.99768 * 11 9 8 15 15 C 1.53282 * 109.06568 * 297.02892 * 14 11 9 16 16 O 1.42902 * 109.46027 * 302.45018 * 15 14 11 17 17 C 1.42902 * 114.10157 * 61.15359 * 16 15 14 18 18 C 1.53097 * 109.41396 * 298.84368 * 17 16 15 19 19 N 1.46505 * 109.46950 * 120.00159 * 2 1 3 20 20 C 1.36940 * 119.99635 * 275.82774 * 19 2 1 21 21 H 1.08003 * 119.99846 * 344.16248 * 20 19 2 22 22 C 1.38812 * 119.99975 * 164.16583 * 20 19 2 23 23 N 1.31619 * 119.99522 * 357.01413 * 22 20 19 24 24 Si 1.86799 * 119.99861 * 177.01496 * 22 20 19 25 25 H 1.48495 * 109.47193 * 59.99990 * 24 22 20 26 26 H 1.48501 * 109.46908 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46893 * 299.99606 * 24 22 20 28 28 H 1.08999 * 109.46973 * 300.00208 * 1 2 3 29 29 H 1.09000 * 109.47216 * 60.00137 * 1 2 3 30 30 H 1.09008 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47090 * 293.33085 * 4 2 1 32 32 H 1.09001 * 109.46600 * 53.33526 * 4 2 1 33 33 H 1.09001 * 109.47048 * 179.97438 * 7 5 4 34 34 H 1.08998 * 109.47220 * 299.99918 * 7 5 4 35 35 H 1.09005 * 109.47209 * 60.00318 * 7 5 4 36 36 H 0.97002 * 119.99896 * 16.80527 * 8 5 4 37 37 H 1.08996 * 109.47252 * 60.00353 * 12 11 9 38 38 H 1.09001 * 109.47541 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.52411 * 57.02429 * 14 11 9 40 40 H 1.09007 * 109.52437 * 177.20811 * 14 11 9 41 41 H 1.09001 * 109.45714 * 182.44873 * 15 14 11 42 42 H 1.09006 * 109.46360 * 62.45016 * 15 14 11 43 43 H 1.09004 * 109.48166 * 178.86071 * 17 16 15 44 44 H 1.08995 * 109.48605 * 58.83014 * 17 16 15 45 45 H 1.08994 * 109.51820 * 297.70004 * 18 17 16 46 46 H 1.09004 * 109.57090 * 177.54290 * 18 17 16 47 47 H 0.96997 * 120.00384 * 95.83391 * 19 2 1 48 48 H 0.97004 * 119.99189 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5608 -0.5779 -1.3358 6 1 3.8301 0.4766 -1.2776 7 6 4.0529 -1.1575 -2.6635 8 7 4.1837 -1.3030 -0.2257 9 6 5.4648 -1.0516 0.1090 10 8 6.0700 -0.1550 -0.4393 11 6 6.1453 -1.8847 1.1644 12 6 6.2299 -3.3379 0.6937 13 9 4.9401 -3.8318 0.4708 14 6 5.3441 -1.8142 2.4681 15 6 5.3329 -0.3664 2.9713 16 8 6.6766 0.0850 3.1526 17 6 7.4587 0.0843 1.9566 18 6 7.5565 -1.3437 1.4133 19 7 2.0183 -0.6907 1.1962 20 6 2.1330 -0.0117 2.3799 21 1 2.1148 1.0681 2.3870 22 6 2.2726 -0.7114 3.5706 23 7 2.2358 -2.0271 3.5689 24 14 2.5127 0.2143 5.1752 25 1 1.3456 1.1007 5.4147 26 1 2.6344 -0.7558 6.2929 27 1 3.7483 1.0339 5.0937 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7774 -1.7777 -1.1915 32 1 1.5825 -0.2810 -2.1352 33 1 5.1363 -1.0549 -2.7254 34 1 3.7836 -2.2121 -2.7217 35 1 3.5895 -0.6180 -3.4896 36 1 3.6741 -1.9640 0.2686 37 1 6.8029 -3.3871 -0.2323 38 1 6.7218 -3.9395 1.4580 39 1 4.3221 -2.1468 2.2861 40 1 5.8090 -2.4560 3.2166 41 1 4.8012 -0.3164 3.9216 42 1 4.8316 0.2683 2.2405 43 1 8.4585 0.4591 2.1759 44 1 6.9855 0.7248 1.2123 45 1 8.0661 -1.9758 2.1404 46 1 8.1158 -1.3409 0.4777 47 1 2.2605 -1.6288 1.1498 48 1 2.3338 -2.5160 4.4010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135476963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:23 Heat of formation + Delta-G solvation = -146.227709 kcal Electronic energy + Delta-G solvation = -30819.223180 eV Core-core repulsion = 26822.911987 eV Total energy + Delta-G solvation = -3996.311192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.63758 -41.68447 -39.47239 -38.20905 -35.82133 -35.45292 -34.08687 -32.19019 -31.57200 -30.17956 -28.78195 -27.59994 -25.60590 -24.85389 -24.49788 -23.34393 -21.69197 -21.65833 -20.24479 -19.07157 -17.76727 -17.63414 -17.26367 -17.02960 -16.66844 -16.64389 -16.41556 -15.87114 -15.67120 -15.44796 -15.39915 -15.21409 -14.49688 -14.47606 -14.27644 -14.10979 -13.60605 -13.49519 -13.35116 -13.18492 -13.08360 -12.83987 -12.64378 -12.52993 -12.47853 -12.24723 -12.20123 -12.19266 -12.09188 -11.80599 -11.59251 -11.43082 -11.38436 -11.30359 -10.72827 -10.63572 -10.27201 -9.77405 -8.76814 -7.82997 -5.08231 1.41975 1.47241 1.50064 1.71859 2.38479 2.58069 2.99958 3.39407 3.49604 3.52567 3.59267 3.80700 3.96422 4.05333 4.11780 4.15457 4.17421 4.27392 4.37944 4.39368 4.54165 4.57741 4.66143 4.70019 4.76377 4.80714 4.83952 4.86944 4.88859 4.91394 4.96598 5.08312 5.10229 5.13791 5.16185 5.23404 5.36925 5.42969 5.44511 5.62257 5.69295 5.81503 6.31550 6.42660 6.73753 7.38749 7.48110 8.18468 8.49131 9.36670 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.010016 B = 0.008934 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.840790 B = 3133.246215 C = 4705.765725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.032 0.968 4 C -0.120 4.120 5 C 0.145 3.855 6 H 0.056 0.944 7 C -0.151 4.151 8 N -0.692 5.692 9 C 0.525 3.475 10 O -0.578 6.578 11 C -0.114 4.114 12 C 0.076 3.924 13 F -0.221 7.221 14 C -0.133 4.133 15 C 0.081 3.919 16 O -0.409 6.409 17 C 0.048 3.952 18 C -0.119 4.119 19 N -0.716 5.716 20 C -0.221 4.221 21 H 0.048 0.952 22 C -0.024 4.024 23 N -0.933 5.933 24 Si 0.909 3.091 25 H -0.294 1.294 26 H -0.294 1.294 27 H -0.283 1.283 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.405 0.595 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.112 0.888 44 H 0.046 0.954 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.371 0.629 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.324 -3.363 -10.337 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.050 0.950 4 C -0.158 4.158 5 C 0.041 3.959 6 H 0.074 0.926 7 C -0.209 4.209 8 N -0.345 5.345 9 C 0.311 3.689 10 O -0.460 6.460 11 C -0.118 4.118 12 C 0.021 3.979 13 F -0.202 7.202 14 C -0.171 4.171 15 C 0.005 3.995 16 O -0.329 6.329 17 C -0.028 4.028 18 C -0.156 4.156 19 N -0.360 5.360 20 C -0.354 4.354 21 H 0.066 0.934 22 C -0.219 4.219 23 N -0.583 5.583 24 Si 0.741 3.259 25 H -0.221 1.221 26 H -0.220 1.220 27 H -0.210 1.210 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.245 0.755 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.130 0.870 44 H 0.065 0.935 45 H 0.117 0.883 46 H 0.113 0.887 47 H 0.205 0.795 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.711 -2.596 -10.449 13.243 hybrid contribution -0.616 0.123 1.548 1.670 sum 7.095 -2.473 -8.901 11.648 Atomic orbital electron populations 1.22252 0.98031 1.00695 1.00212 1.20504 0.92451 0.94979 0.86666 0.95033 1.22101 0.93111 1.01768 0.98865 1.20937 0.92939 0.95774 0.86294 0.92626 1.22081 1.00885 1.01714 0.96187 1.46321 1.11901 1.42079 1.34178 1.20402 0.82420 0.83632 0.82441 1.90562 1.66062 1.32914 1.56445 1.21633 0.98278 0.96771 0.95103 1.22160 0.80427 0.91131 1.04141 1.92742 1.42246 1.88734 1.96445 1.22198 1.02835 0.97323 0.94760 1.22449 0.81828 0.94445 1.00769 1.87832 1.24087 1.87032 1.33969 1.22829 0.96369 0.96887 0.86695 1.21923 0.93247 0.97233 1.03229 1.42469 1.77425 1.10608 1.05449 1.19034 1.40627 0.90116 0.85608 0.93376 1.24822 1.03878 0.95591 0.97579 1.69681 1.57916 1.04807 1.25855 0.86346 0.77597 0.78448 0.83482 1.22099 1.21967 1.21013 0.95319 0.91485 0.93792 0.91133 0.87397 0.93812 0.91796 0.89708 0.75509 0.88345 0.87202 0.88005 0.90800 0.90919 0.94599 0.87007 0.93543 0.88321 0.88731 0.79477 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 9.48 71.98 0.68 -4.39 16 2 C 0.16 5.82 2.87 44.99 0.13 5.95 16 3 H 0.03 1.23 8.07 -2.39 -0.02 1.21 16 4 C -0.12 -3.36 4.39 30.60 0.13 -3.22 16 5 C 0.15 4.41 2.53 44.99 0.11 4.52 16 6 H 0.06 1.95 7.75 -2.39 -0.02 1.93 16 7 C -0.15 -3.69 9.35 71.98 0.67 -3.02 16 8 N -0.69 -23.72 3.65 -442.56 -1.62 -25.33 16 9 C 0.52 18.60 4.87 87.66 0.43 19.03 16 10 O -0.58 -22.69 13.36 -3.01 -0.04 -22.73 16 11 C -0.11 -3.54 0.53 -52.81 -0.03 -3.57 16 12 C 0.08 1.87 6.36 71.98 0.46 2.33 16 13 F -0.22 -6.70 15.01 44.97 0.68 -6.02 16 14 C -0.13 -5.00 4.69 30.75 0.14 -4.86 16 15 C 0.08 3.51 5.36 72.08 0.39 3.89 16 16 O -0.41 -16.40 10.77 -148.98 -1.60 -18.01 16 17 C 0.05 1.58 6.55 72.01 0.47 2.05 16 18 C -0.12 -3.20 4.56 30.68 0.14 -3.06 16 19 N -0.72 -31.20 3.85 -322.92 -1.24 -32.44 16 20 C -0.22 -11.08 8.86 84.03 0.74 -10.34 16 21 H 0.05 2.53 7.83 -2.91 -0.02 2.51 16 22 C -0.02 -1.22 3.97 84.86 0.34 -0.88 16 23 N -0.93 -48.95 11.95 21.65 0.26 -48.69 16 24 Si 0.91 43.92 27.34 68.60 1.88 45.80 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 27 H -0.28 -13.78 6.68 99.48 0.66 -13.11 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.04 1.20 7.71 -2.39 -0.02 1.18 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.41 14.85 3.87 -92.71 -0.36 14.50 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.10 4.35 5.53 -2.39 -0.01 4.33 16 40 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 41 H 0.07 3.46 4.42 -2.39 -0.01 3.44 16 42 H 0.04 1.73 6.67 -2.38 -0.02 1.71 16 43 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 44 H 0.05 1.77 5.93 -2.39 -0.01 1.75 16 45 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.09 2.25 7.98 -2.39 -0.02 2.23 16 47 H 0.37 16.78 5.82 -92.71 -0.54 16.24 16 48 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 Total: -1.00 -59.65 358.81 3.15 -56.50 By element: Atomic # 1 Polarization: 46.45 SS G_CDS: 0.02 Total: 46.47 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 4.81 Total: 4.44 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -2.60 Total: -106.46 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -1.64 Total: -40.74 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.68 Total: -6.02 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -59.65 3.15 -56.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135476963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.727 kcal (2) G-P(sol) polarization free energy of solvation -59.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds