Wall clock time and date at job start Tue Mar 31 2020 10:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46888 * 2 1 4 4 C 1.52995 * 109.47526 * 240.00246 * 2 1 3 5 5 C 1.53003 * 109.47465 * 65.80492 * 4 2 1 6 6 H 1.09001 * 109.46900 * 304.47751 * 5 4 2 7 7 C 1.52992 * 109.47537 * 184.47612 * 5 4 2 8 8 N 1.46502 * 109.46384 * 64.47460 * 5 4 2 9 9 C 1.36938 * 119.99722 * 201.30238 * 8 5 4 10 10 H 1.08007 * 120.00037 * 5.30851 * 9 8 5 11 11 C 1.38811 * 119.99973 * 185.30569 * 9 8 5 12 12 N 1.31620 * 119.99904 * 5.14980 * 11 9 8 13 13 Si 1.86801 * 120.00054 * 185.41732 * 11 9 8 14 14 H 1.48492 * 109.47192 * 179.72681 * 13 11 9 15 15 H 1.48500 * 109.47289 * 299.72981 * 13 11 9 16 16 H 1.48500 * 109.46624 * 59.72662 * 13 11 9 17 17 N 1.46498 * 109.47187 * 119.99823 * 2 1 3 18 18 C 1.34777 * 120.00342 * 278.35768 * 17 2 1 19 19 O 1.21282 * 119.99854 * 5.01236 * 18 17 2 20 20 C 1.50694 * 120.00296 * 185.01095 * 18 17 2 21 21 C 1.53001 * 109.54565 * 67.16738 * 20 18 17 22 22 F 1.39891 * 109.47320 * 184.67007 * 21 20 18 23 23 C 1.53175 * 109.54425 * 306.99079 * 20 18 17 24 24 C 1.53281 * 109.06287 * 297.02965 * 23 20 18 25 25 O 1.42900 * 109.46291 * 302.44081 * 24 23 20 26 26 C 1.42904 * 114.09434 * 61.16001 * 25 24 23 27 27 C 1.53094 * 109.41387 * 298.84177 * 26 25 24 28 28 H 1.08999 * 109.47201 * 60.00383 * 1 2 3 29 29 H 1.09005 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47469 * 300.00236 * 1 2 3 31 31 H 1.09010 * 109.46575 * 305.80985 * 4 2 1 32 32 H 1.08993 * 109.47810 * 185.81124 * 4 2 1 33 33 H 1.09002 * 109.46955 * 59.99658 * 7 5 4 34 34 H 1.08990 * 109.47803 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46991 * 300.00527 * 7 5 4 36 36 H 0.96995 * 120.00487 * 21.31334 * 8 5 4 37 37 H 0.96996 * 119.99902 * 355.27099 * 12 11 9 38 38 H 0.97000 * 120.00412 * 98.35430 * 17 2 1 39 39 H 1.09000 * 109.46850 * 304.67823 * 21 20 18 40 40 H 1.09005 * 109.46805 * 64.67539 * 21 20 18 41 41 H 1.08998 * 109.52535 * 57.01824 * 23 20 18 42 42 H 1.08999 * 109.52582 * 177.20919 * 23 20 18 43 43 H 1.09012 * 109.45879 * 182.44704 * 24 23 20 44 44 H 1.08998 * 109.46989 * 62.44870 * 24 23 20 45 45 H 1.09003 * 109.48473 * 178.86058 * 26 25 24 46 46 H 1.09000 * 109.49123 * 58.83263 * 26 25 24 47 47 H 1.08994 * 109.52269 * 297.69962 * 27 26 25 48 48 H 1.09003 * 109.57190 * 177.54379 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6528 0.0794 -2.4942 6 1 0.5745 0.2385 -2.5030 7 6 2.0641 -0.6958 -3.7475 8 7 2.3374 1.3745 -2.4744 9 6 1.8462 2.4198 -3.2100 10 1 0.9087 2.3165 -3.7362 11 6 2.5532 3.6124 -3.2794 12 7 3.7425 3.7056 -2.7232 13 14 1.8137 5.0870 -4.1557 14 1 2.7584 6.2305 -4.0838 15 1 1.5611 4.7423 -5.5779 16 1 0.5337 5.4605 -3.5020 17 7 2.0183 -0.6906 1.1962 18 6 2.0830 -0.0364 2.3728 19 8 1.6528 1.0939 2.4626 20 6 2.6899 -0.7095 3.5767 21 6 4.1885 -0.9154 3.3470 22 9 4.7301 -1.6345 4.4178 23 6 2.0147 -2.0662 3.8000 24 6 0.5298 -1.8418 4.1070 25 8 0.4027 -0.9946 5.2507 26 6 0.9757 0.3035 5.0817 27 6 2.4770 0.1664 4.8152 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.5942 -1.7145 -1.3027 32 1 3.1250 -0.8122 -1.1988 33 1 1.5548 -1.6594 -3.7621 34 1 1.7886 -0.1254 -4.6344 35 1 3.1424 -0.8549 -3.7386 36 1 3.1385 1.4915 -1.9403 37 1 4.0957 2.9646 -2.2065 38 1 2.2951 -1.6186 1.1415 39 1 4.3412 -1.4711 2.4218 40 1 4.6814 0.0541 3.2741 41 1 2.1151 -2.6753 2.9018 42 1 2.4873 -2.5744 4.6406 43 1 0.0520 -2.8005 4.3098 44 1 0.0489 -1.3702 3.2500 45 1 0.8193 0.8906 5.9867 46 1 0.5008 0.8036 4.2375 47 1 2.9589 -0.2967 5.6762 48 1 2.9088 1.1523 4.6427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135476964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:27 Heat of formation + Delta-G solvation = -139.772821 kcal Electronic energy + Delta-G solvation = -28560.640488 eV Core-core repulsion = 24564.609201 eV Total energy + Delta-G solvation = -3996.031287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.98920 -40.97538 -38.57456 -37.10265 -34.91654 -34.69315 -32.56487 -31.37911 -30.27815 -28.37330 -28.21636 -26.47995 -24.12612 -23.93349 -23.46740 -22.72846 -21.06169 -20.07942 -19.23186 -17.46187 -17.24418 -16.86031 -16.55402 -16.13397 -15.80065 -15.63664 -15.30479 -14.84820 -14.78423 -14.68991 -14.19374 -13.83108 -13.80238 -13.61721 -13.32111 -12.94132 -12.65456 -12.47820 -12.26063 -12.08942 -11.88170 -11.81796 -11.65793 -11.54107 -11.33976 -11.04765 -10.81569 -10.77424 -10.68291 -10.61516 -10.45871 -10.22883 -9.96204 -9.88568 -9.50252 -9.19364 -9.05030 -8.85697 -7.03879 -6.08283 -3.09334 2.45554 3.02281 3.52277 3.56135 3.67236 3.73216 3.99444 4.12851 4.23649 4.48702 4.64915 4.67505 4.78077 4.86868 4.97022 5.01913 5.14777 5.18208 5.23039 5.28269 5.38765 5.43421 5.51459 5.56199 5.58360 5.62157 5.68881 5.69793 5.81189 5.85169 5.93006 5.94797 6.05756 6.14454 6.29623 6.32601 6.41158 6.53009 6.62772 6.80139 6.97605 6.99078 7.43778 7.81931 8.14445 8.76417 9.22808 10.08738 10.23678 11.39203 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.003417 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.460463 B = 8192.718329 C = 8431.024769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.100 0.900 4 C -0.130 4.130 5 C 0.179 3.821 6 H 0.051 0.949 7 C -0.163 4.163 8 N -0.734 5.734 9 C -0.329 4.329 10 H 0.063 0.937 11 C -0.043 4.043 12 N -0.943 5.943 13 Si 1.077 2.923 14 H -0.285 1.285 15 H -0.296 1.296 16 H -0.295 1.295 17 N -0.723 5.723 18 C 0.522 3.478 19 O -0.520 6.520 20 C -0.113 4.113 21 C 0.077 3.923 22 F -0.208 7.208 23 C -0.145 4.145 24 C 0.060 3.940 25 O -0.382 6.382 26 C 0.053 3.947 27 C -0.131 4.131 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.365 0.635 37 H 0.254 0.746 38 H 0.394 0.606 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 -15.202 13.430 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.118 0.882 4 C -0.168 4.168 5 C 0.069 3.931 6 H 0.069 0.931 7 C -0.223 4.223 8 N -0.377 5.377 9 C -0.460 4.460 10 H 0.081 0.919 11 C -0.241 4.241 12 N -0.588 5.588 13 Si 0.908 3.092 14 H -0.211 1.211 15 H -0.223 1.223 16 H -0.223 1.223 17 N -0.374 5.374 18 C 0.306 3.694 19 O -0.395 6.395 20 C -0.117 4.117 21 C 0.022 3.978 22 F -0.189 7.189 23 C -0.183 4.183 24 C -0.017 4.017 25 O -0.301 6.301 26 C -0.023 4.023 27 C -0.169 4.169 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.198 0.802 37 H 0.065 0.935 38 H 0.228 0.772 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.070 0.930 45 H 0.113 0.887 46 H 0.090 0.910 47 H 0.100 0.900 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.455 -12.855 13.057 18.646 hybrid contribution 0.359 -2.055 0.214 2.098 sum -3.096 -14.910 13.271 20.200 Atomic orbital electron populations 1.22140 0.95353 1.01090 1.03020 1.21078 0.94274 0.98297 0.82270 0.88158 1.22121 1.01082 0.98831 0.94794 1.20167 0.96449 0.85937 0.90531 0.93132 1.22406 1.00501 0.98477 1.00961 1.42451 1.31763 1.07194 1.56308 1.19994 1.05703 0.93448 1.26848 0.91885 1.25714 0.96015 0.99824 1.02512 1.70876 1.16327 1.35019 1.36599 0.83285 0.74747 0.76010 0.75172 1.21101 1.22331 1.22287 1.46273 1.66568 1.15434 1.09139 1.20066 0.79301 0.86342 0.83701 1.90733 1.46572 1.18304 1.83857 1.21560 0.96267 0.97974 0.95865 1.21908 0.91077 0.97314 0.87525 1.92768 1.86935 1.80265 1.58907 1.22309 0.97437 0.94814 1.03713 1.22587 0.94457 0.95249 0.89424 1.87910 1.79138 1.25317 1.37732 1.22762 0.91968 0.84452 1.03134 1.22049 0.98767 1.00441 0.95631 0.90670 0.93327 0.92569 0.91741 0.91746 0.94549 0.92581 0.93710 0.80166 0.93480 0.77233 0.90065 0.89639 0.90341 0.89098 0.88455 0.93029 0.88686 0.90964 0.89987 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.19 37.16 0.34 -1.95 16 2 C 0.14 2.14 2.53 -67.93 -0.17 1.97 16 3 H 0.10 1.97 7.14 -51.93 -0.37 1.60 16 4 C -0.13 -1.84 4.37 -26.73 -0.12 -1.96 16 5 C 0.18 3.31 2.76 -67.93 -0.19 3.12 16 6 H 0.05 0.97 6.36 -51.93 -0.33 0.63 16 7 C -0.16 -2.84 9.44 37.15 0.35 -2.49 16 8 N -0.73 -17.44 4.49 -53.42 -0.24 -17.68 16 9 C -0.33 -9.01 9.89 -15.06 -0.15 -9.16 16 10 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 11 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 12 N -0.94 -29.01 13.69 55.49 0.76 -28.25 16 13 Si 1.08 25.98 29.92 -169.99 -5.09 20.90 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.30 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 17 N -0.72 -8.44 4.97 -53.81 -0.27 -8.71 16 18 C 0.52 6.82 4.95 -10.99 -0.05 6.76 16 19 O -0.52 -8.98 13.51 5.56 0.08 -8.91 16 20 C -0.11 -1.16 0.53 -155.48 -0.08 -1.24 16 21 C 0.08 0.72 6.36 37.16 0.24 0.95 16 22 F -0.21 -2.17 16.22 2.25 0.04 -2.13 16 23 C -0.14 -1.23 4.69 -26.50 -0.12 -1.36 16 24 C 0.06 0.58 6.62 37.30 0.25 0.83 16 25 O -0.38 -4.58 10.77 -35.23 -0.38 -4.96 16 26 C 0.05 0.62 6.56 37.21 0.24 0.86 16 27 C -0.13 -1.43 4.49 -26.59 -0.12 -1.55 16 28 H 0.07 1.20 6.50 -51.93 -0.34 0.86 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 31 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.37 9.08 6.58 -40.82 -0.27 8.82 16 37 H 0.25 7.70 6.81 -40.82 -0.28 7.42 16 38 H 0.39 3.38 7.42 -40.82 -0.30 3.08 16 39 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.51 7.04 -51.93 -0.37 0.14 16 42 H 0.09 0.78 7.61 -51.93 -0.40 0.38 16 43 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 44 H 0.05 0.55 7.38 -51.93 -0.38 0.17 16 45 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 1.00 6.08 -51.93 -0.32 0.68 16 47 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 48 H 0.09 0.99 7.93 -51.93 -0.41 0.58 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -32.86 374.44 -7.14 -40.00 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -8.00 Total: 10.61 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 0.32 Total: -6.52 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.25 Total: -54.64 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.30 Total: -13.87 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.09 Total: 20.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.86 -7.14 -40.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135476964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.773 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds