Wall clock time and date at job start Tue Mar 31 2020 10:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46888 * 2 1 4 4 C 1.52995 * 109.47526 * 240.00246 * 2 1 3 5 5 C 1.53003 * 109.47465 * 65.80492 * 4 2 1 6 6 H 1.09001 * 109.46900 * 304.47751 * 5 4 2 7 7 C 1.52992 * 109.47537 * 184.47612 * 5 4 2 8 8 N 1.46502 * 109.46384 * 64.47460 * 5 4 2 9 9 C 1.36938 * 119.99722 * 201.30238 * 8 5 4 10 10 H 1.08007 * 120.00037 * 5.30851 * 9 8 5 11 11 C 1.38811 * 119.99973 * 185.30569 * 9 8 5 12 12 N 1.31620 * 119.99904 * 5.14980 * 11 9 8 13 13 Si 1.86801 * 120.00054 * 185.41732 * 11 9 8 14 14 H 1.48492 * 109.47192 * 179.72681 * 13 11 9 15 15 H 1.48500 * 109.47289 * 299.72981 * 13 11 9 16 16 H 1.48500 * 109.46624 * 59.72662 * 13 11 9 17 17 N 1.46498 * 109.47187 * 119.99823 * 2 1 3 18 18 C 1.34777 * 120.00342 * 278.35768 * 17 2 1 19 19 O 1.21282 * 119.99854 * 5.01236 * 18 17 2 20 20 C 1.50694 * 120.00296 * 185.01095 * 18 17 2 21 21 C 1.53001 * 109.54565 * 67.16738 * 20 18 17 22 22 F 1.39891 * 109.47320 * 184.67007 * 21 20 18 23 23 C 1.53175 * 109.54425 * 306.99079 * 20 18 17 24 24 C 1.53281 * 109.06287 * 297.02965 * 23 20 18 25 25 O 1.42900 * 109.46291 * 302.44081 * 24 23 20 26 26 C 1.42904 * 114.09434 * 61.16001 * 25 24 23 27 27 C 1.53094 * 109.41387 * 298.84177 * 26 25 24 28 28 H 1.08999 * 109.47201 * 60.00383 * 1 2 3 29 29 H 1.09005 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47469 * 300.00236 * 1 2 3 31 31 H 1.09010 * 109.46575 * 305.80985 * 4 2 1 32 32 H 1.08993 * 109.47810 * 185.81124 * 4 2 1 33 33 H 1.09002 * 109.46955 * 59.99658 * 7 5 4 34 34 H 1.08990 * 109.47803 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46991 * 300.00527 * 7 5 4 36 36 H 0.96995 * 120.00487 * 21.31334 * 8 5 4 37 37 H 0.96996 * 119.99902 * 355.27099 * 12 11 9 38 38 H 0.97000 * 120.00412 * 98.35430 * 17 2 1 39 39 H 1.09000 * 109.46850 * 304.67823 * 21 20 18 40 40 H 1.09005 * 109.46805 * 64.67539 * 21 20 18 41 41 H 1.08998 * 109.52535 * 57.01824 * 23 20 18 42 42 H 1.08999 * 109.52582 * 177.20919 * 23 20 18 43 43 H 1.09012 * 109.45879 * 182.44704 * 24 23 20 44 44 H 1.08998 * 109.46989 * 62.44870 * 24 23 20 45 45 H 1.09003 * 109.48473 * 178.86058 * 26 25 24 46 46 H 1.09000 * 109.49123 * 58.83263 * 26 25 24 47 47 H 1.08994 * 109.52269 * 297.69962 * 27 26 25 48 48 H 1.09003 * 109.57190 * 177.54379 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6528 0.0794 -2.4942 6 1 0.5745 0.2385 -2.5030 7 6 2.0641 -0.6958 -3.7475 8 7 2.3374 1.3745 -2.4744 9 6 1.8462 2.4198 -3.2100 10 1 0.9087 2.3165 -3.7362 11 6 2.5532 3.6124 -3.2794 12 7 3.7425 3.7056 -2.7232 13 14 1.8137 5.0870 -4.1557 14 1 2.7584 6.2305 -4.0838 15 1 1.5611 4.7423 -5.5779 16 1 0.5337 5.4605 -3.5020 17 7 2.0183 -0.6906 1.1962 18 6 2.0830 -0.0364 2.3728 19 8 1.6528 1.0939 2.4626 20 6 2.6899 -0.7095 3.5767 21 6 4.1885 -0.9154 3.3470 22 9 4.7301 -1.6345 4.4178 23 6 2.0147 -2.0662 3.8000 24 6 0.5298 -1.8418 4.1070 25 8 0.4027 -0.9946 5.2507 26 6 0.9757 0.3035 5.0817 27 6 2.4770 0.1664 4.8152 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.5942 -1.7145 -1.3027 32 1 3.1250 -0.8122 -1.1988 33 1 1.5548 -1.6594 -3.7621 34 1 1.7886 -0.1254 -4.6344 35 1 3.1424 -0.8549 -3.7386 36 1 3.1385 1.4915 -1.9403 37 1 4.0957 2.9646 -2.2065 38 1 2.2951 -1.6186 1.1415 39 1 4.3412 -1.4711 2.4218 40 1 4.6814 0.0541 3.2741 41 1 2.1151 -2.6753 2.9018 42 1 2.4873 -2.5744 4.6406 43 1 0.0520 -2.8005 4.3098 44 1 0.0489 -1.3702 3.2500 45 1 0.8193 0.8906 5.9867 46 1 0.5008 0.8036 4.2375 47 1 2.9589 -0.2967 5.6762 48 1 2.9088 1.1523 4.6427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135476964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:26 Heat of formation + Delta-G solvation = -162.646911 kcal Electronic energy + Delta-G solvation = -28561.632383 eV Core-core repulsion = 24564.609201 eV Total energy + Delta-G solvation = -3997.023182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.77103 -41.96048 -39.60467 -38.46984 -36.37610 -35.66784 -34.29547 -32.33340 -31.49418 -30.12384 -29.06174 -27.74432 -25.65749 -24.92177 -24.75738 -23.74130 -22.28732 -21.36709 -20.36836 -19.45576 -18.18776 -17.76373 -17.40827 -17.14852 -16.66046 -16.60756 -16.43568 -16.28040 -16.23866 -15.72371 -15.57565 -15.30279 -14.79306 -14.73944 -14.65728 -14.21657 -13.76253 -13.53452 -13.42896 -13.37246 -13.06688 -12.90771 -12.71922 -12.60599 -12.45652 -12.42179 -12.35001 -12.25223 -11.92370 -11.84998 -11.69081 -11.57074 -11.47088 -11.22513 -10.91084 -10.83540 -10.47448 -10.17475 -9.06840 -8.33858 -5.27277 1.42616 1.56321 1.66150 1.81749 1.98623 2.71848 2.85693 3.18806 3.30716 3.38152 3.43671 3.68049 3.72683 3.87415 3.89162 3.99115 4.06546 4.12436 4.19979 4.23521 4.31536 4.41084 4.44327 4.51747 4.52860 4.65016 4.67159 4.71407 4.73626 4.78412 4.90194 4.91475 4.93783 4.97009 5.00754 5.08349 5.13369 5.20706 5.40541 5.46341 5.54508 5.66311 6.14256 6.46340 6.53765 7.15041 7.16070 8.05519 8.16403 9.17313 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.003417 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.460463 B = 8192.718329 C = 8431.024769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.153 3.847 3 H 0.045 0.955 4 C -0.115 4.115 5 C 0.169 3.831 6 H 0.046 0.954 7 C -0.154 4.154 8 N -0.745 5.745 9 C -0.319 4.319 10 H 0.064 0.936 11 C -0.106 4.106 12 N -0.978 5.978 13 Si 1.120 2.880 14 H -0.296 1.296 15 H -0.276 1.276 16 H -0.283 1.283 17 N -0.706 5.706 18 C 0.521 3.479 19 O -0.568 6.568 20 C -0.107 4.107 21 C 0.078 3.922 22 F -0.211 7.211 23 C -0.139 4.139 24 C 0.053 3.947 25 O -0.395 6.395 26 C 0.055 3.945 27 C -0.131 4.131 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.040 0.960 36 H 0.356 0.644 37 H 0.242 0.758 38 H 0.414 0.586 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.122 0.878 44 H 0.038 0.962 45 H 0.105 0.895 46 H 0.045 0.955 47 H 0.093 0.907 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -18.377 13.388 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.048 3.952 3 H 0.064 0.936 4 C -0.153 4.153 5 C 0.061 3.939 6 H 0.064 0.936 7 C -0.214 4.214 8 N -0.387 5.387 9 C -0.451 4.451 10 H 0.081 0.919 11 C -0.297 4.297 12 N -0.627 5.627 13 Si 0.946 3.054 14 H -0.222 1.222 15 H -0.202 1.202 16 H -0.210 1.210 17 N -0.358 5.358 18 C 0.307 3.693 19 O -0.446 6.446 20 C -0.110 4.110 21 C 0.023 3.977 22 F -0.192 7.192 23 C -0.176 4.176 24 C -0.024 4.024 25 O -0.314 6.314 26 C -0.021 4.021 27 C -0.169 4.169 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.188 0.812 37 H 0.053 0.947 38 H 0.252 0.748 39 H 0.123 0.877 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.140 0.860 44 H 0.056 0.944 45 H 0.123 0.877 46 H 0.063 0.937 47 H 0.111 0.889 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.968 -16.127 13.004 21.093 hybrid contribution 0.431 -1.144 0.257 1.249 sum -3.537 -17.271 13.261 22.060 Atomic orbital electron populations 1.22049 0.94976 1.02675 1.01102 1.20706 0.94439 0.96065 0.83956 0.93621 1.21987 1.01627 0.99807 0.91895 1.20469 0.95673 0.84432 0.93340 0.93627 1.22266 1.00686 0.99809 0.98650 1.42648 1.31696 1.08734 1.55658 1.20317 1.05120 0.94289 1.25352 0.91851 1.26986 0.96123 1.02836 1.03777 1.70983 1.17965 1.34962 1.38802 0.82713 0.74246 0.73000 0.75431 1.22221 1.20219 1.20950 1.45993 1.65892 1.16175 1.07765 1.20569 0.78429 0.85739 0.84537 1.90727 1.48629 1.20644 1.84641 1.21521 0.97050 0.98653 0.93825 1.21947 0.89979 0.97511 0.88270 1.92765 1.86878 1.80256 1.59269 1.22342 0.96154 0.93688 1.05428 1.22804 0.95540 0.95675 0.88355 1.87890 1.79365 1.25310 1.38856 1.22681 0.92284 0.84632 1.02508 1.22031 0.98149 1.00166 0.96510 0.92582 0.89844 0.94518 0.87253 0.91335 0.90344 0.95281 0.94059 0.81208 0.94730 0.74774 0.87669 0.90341 0.87416 0.88327 0.85987 0.94401 0.87731 0.93679 0.88856 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.19 71.98 0.66 -3.55 16 2 C 0.15 4.43 2.53 44.99 0.11 4.54 16 3 H 0.05 1.87 7.14 -2.38 -0.02 1.85 16 4 C -0.11 -2.96 4.37 30.59 0.13 -2.82 16 5 C 0.17 6.01 2.76 44.99 0.12 6.14 16 6 H 0.05 1.69 6.36 -2.39 -0.02 1.67 16 7 C -0.15 -5.00 9.44 71.98 0.68 -4.32 16 8 N -0.74 -35.92 4.49 -322.94 -1.45 -37.37 16 9 C -0.32 -17.72 9.89 84.03 0.83 -16.89 16 10 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 11 C -0.11 -6.21 5.50 84.86 0.47 -5.75 16 12 N -0.98 -62.04 13.69 21.65 0.30 -61.74 16 13 Si 1.12 53.10 29.92 68.60 2.05 55.16 16 14 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 15 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 N -0.71 -15.17 4.97 -442.54 -2.20 -17.37 16 18 C 0.52 13.41 4.95 87.65 0.43 13.84 16 19 O -0.57 -20.58 13.51 -3.04 -0.04 -20.62 16 20 C -0.11 -2.04 0.53 -52.81 -0.03 -2.06 16 21 C 0.08 1.30 6.36 71.98 0.46 1.76 16 22 F -0.21 -3.87 16.22 44.97 0.73 -3.14 16 23 C -0.14 -1.92 4.69 30.75 0.14 -1.78 16 24 C 0.05 0.91 6.62 72.08 0.48 1.38 16 25 O -0.40 -9.07 10.77 -148.98 -1.60 -10.68 16 26 C 0.06 1.31 6.56 72.01 0.47 1.78 16 27 C -0.13 -2.81 4.49 30.69 0.14 -2.68 16 28 H 0.06 1.78 6.50 -2.39 -0.02 1.76 16 29 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.04 1.16 7.75 -2.39 -0.02 1.14 16 31 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.36 18.29 6.58 -92.71 -0.61 17.68 16 37 H 0.24 15.30 6.81 -92.71 -0.63 14.67 16 38 H 0.41 5.46 7.42 -92.71 -0.69 4.78 16 39 H 0.11 1.26 8.12 -2.39 -0.02 1.24 16 40 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.11 0.87 7.04 -2.39 -0.02 0.85 16 42 H 0.10 1.32 7.61 -2.39 -0.02 1.30 16 43 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.04 0.76 7.38 -2.39 -0.02 0.74 16 45 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.04 1.32 6.08 -2.39 -0.01 1.30 16 47 H 0.09 1.79 7.86 -2.39 -0.02 1.77 16 48 H 0.07 1.75 7.93 -2.39 -0.02 1.73 16 Total: -1.00 -75.36 374.44 2.69 -72.67 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.20 Total: 33.49 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 5.11 Total: -10.40 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -3.35 Total: -116.47 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -1.65 Total: -31.29 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.73 Total: -3.14 kcal Atomic # 14 Polarization: 53.10 SS G_CDS: 2.05 Total: 55.16 kcal Total: -75.36 2.69 -72.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135476964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.979 kcal (2) G-P(sol) polarization free energy of solvation -75.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds