Wall clock time and date at job start Tue Mar 31 2020 10:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21282 * 119.99548 * 0.02562 * 9 8 5 11 11 C 1.50690 * 120.00466 * 180.02562 * 9 8 5 12 12 C 1.53007 * 109.54052 * 60.00437 * 11 9 8 13 13 F 1.39903 * 109.47116 * 179.97438 * 12 11 9 14 14 C 1.53177 * 109.54754 * 299.83151 * 11 9 8 15 15 C 1.53288 * 109.05946 * 297.02646 * 14 11 9 16 16 O 1.42897 * 109.46052 * 302.44013 * 15 14 11 17 17 C 1.42907 * 114.09402 * 61.16031 * 16 15 14 18 18 C 1.53087 * 109.41606 * 298.83874 * 17 16 15 19 19 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 2 1 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 2 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 2 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 29 29 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 31 31 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 32 32 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 33 33 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 34 34 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 35 35 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 36 36 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 37 37 H 1.08998 * 109.46955 * 300.00049 * 12 11 9 38 38 H 1.09001 * 109.47168 * 60.00487 * 12 11 9 39 39 H 1.09004 * 109.52180 * 57.01034 * 14 11 9 40 40 H 1.09003 * 109.52618 * 177.20688 * 14 11 9 41 41 H 1.09003 * 109.45461 * 182.44524 * 15 14 11 42 42 H 1.08994 * 109.46646 * 62.44603 * 15 14 11 43 43 H 1.08999 * 109.47887 * 178.85705 * 17 16 15 44 44 H 1.09000 * 109.48890 * 58.83083 * 17 16 15 45 45 H 1.08995 * 109.52589 * 297.70461 * 18 17 16 46 46 H 1.08999 * 109.57363 * 177.54564 * 18 17 16 47 47 H 0.97000 * 119.99792 * 264.99726 * 19 2 1 48 48 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9356 0.4341 0.5733 11 6 5.5555 2.6563 1.2710 12 6 5.5200 3.0105 2.7591 13 9 5.8869 4.3499 2.9285 14 6 4.5793 3.5560 0.5068 15 6 4.6811 3.2464 -0.9910 16 8 6.0282 3.4397 -1.4267 17 6 6.9783 2.5914 -0.7785 18 6 6.9702 2.8746 0.7259 19 7 2.0183 -0.6907 -1.1962 20 6 2.1491 -0.0075 -2.3757 21 1 1.8926 1.0405 -2.4242 22 6 2.6172 -0.6605 -3.5077 23 7 2.7480 -0.0026 -4.6401 24 14 3.0615 -2.4730 -3.4239 25 1 1.8659 -3.2913 -3.7497 26 1 4.1416 -2.7636 -4.4007 27 1 3.5302 -2.8049 -2.0543 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 1.7517 -1.7715 1.2056 33 1 3.6546 -1.0593 3.4193 34 1 3.8002 -2.4819 2.3595 35 1 5.1715 -1.3617 2.5381 36 1 3.3284 1.4129 1.9028 37 1 4.5121 2.8578 3.1449 38 1 6.2174 2.3718 3.3013 39 1 3.5629 3.3664 0.8519 40 1 4.8351 4.6013 0.6805 41 1 4.0206 3.9133 -1.5453 42 1 4.3862 2.2123 -1.1690 43 1 7.9728 2.7865 -1.1798 44 1 6.7138 1.5486 -0.9536 45 1 7.2742 3.9060 0.9041 46 1 7.6624 2.1989 1.2284 47 1 2.2490 -1.6318 -1.1526 48 1 3.0748 -0.4589 -5.4313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135476965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:29 Heat of formation + Delta-G solvation = -135.679057 kcal Electronic energy + Delta-G solvation = -29603.202833 eV Core-core repulsion = 25607.349065 eV Total energy + Delta-G solvation = -3995.853768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.89621 -40.73064 -38.30408 -36.92688 -34.71325 -34.43127 -32.19345 -31.19237 -30.44652 -29.25642 -28.01419 -26.48468 -23.84894 -23.56467 -23.28111 -22.33549 -20.86576 -19.90336 -19.46160 -17.64106 -16.98670 -16.57698 -16.38111 -16.00618 -15.58980 -15.46812 -15.03435 -14.74907 -14.39682 -14.33552 -14.12922 -13.78785 -13.49365 -13.44064 -13.07918 -12.71442 -12.45007 -12.32209 -12.25428 -12.06502 -12.03357 -11.79268 -11.65559 -11.49689 -11.28674 -11.15070 -10.96393 -10.71167 -10.59160 -10.45539 -10.32358 -10.21840 -9.99889 -9.64188 -9.57038 -9.13398 -8.91905 -8.85494 -7.25489 -5.74338 -3.09671 2.66909 3.19262 3.39519 3.41473 3.48203 4.12999 4.23577 4.33160 4.41126 4.61627 4.63029 4.88028 4.93840 5.01070 5.13934 5.17678 5.23910 5.29886 5.44667 5.46031 5.55074 5.61508 5.63594 5.69858 5.73755 5.77606 5.81051 5.84189 5.93360 5.94087 6.11796 6.15934 6.17077 6.24589 6.26045 6.35925 6.37190 6.48425 6.65106 6.75991 6.93722 7.51667 7.58373 7.99311 8.33329 8.43886 9.22056 9.95279 10.14147 11.43801 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.012516 B = 0.005613 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.608143 B = 4986.977180 C = 5880.978462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.053 0.947 4 C -0.135 4.135 5 C 0.142 3.858 6 H 0.101 0.899 7 C -0.161 4.161 8 N -0.714 5.714 9 C 0.528 3.472 10 O -0.522 6.522 11 C -0.113 4.113 12 C 0.079 3.921 13 F -0.208 7.208 14 C -0.141 4.141 15 C 0.059 3.941 16 O -0.380 6.380 17 C 0.050 3.950 18 C -0.127 4.127 19 N -0.745 5.745 20 C -0.240 4.240 21 H 0.088 0.912 22 C 0.008 3.992 23 N -0.931 5.931 24 Si 0.881 3.119 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.277 1.277 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.394 0.606 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.359 0.641 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 4.477 18.479 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.071 0.929 4 C -0.174 4.174 5 C 0.038 3.962 6 H 0.119 0.881 7 C -0.220 4.220 8 N -0.365 5.365 9 C 0.313 3.687 10 O -0.397 6.397 11 C -0.116 4.116 12 C 0.024 3.976 13 F -0.189 7.189 14 C -0.179 4.179 15 C -0.018 4.018 16 O -0.299 6.299 17 C -0.026 4.026 18 C -0.165 4.165 19 N -0.388 5.388 20 C -0.370 4.370 21 H 0.106 0.894 22 C -0.188 4.188 23 N -0.578 5.578 24 Si 0.711 3.289 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.204 1.204 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.228 0.772 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.192 0.808 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.602 4.234 17.774 18.623 hybrid contribution -0.161 -1.185 0.368 1.251 sum 3.441 3.049 18.142 18.716 Atomic orbital electron populations 1.22426 0.98983 1.00862 1.00331 1.20182 0.91779 0.95717 0.85527 0.92891 1.22228 0.93712 1.02241 0.99207 1.21040 0.95147 0.80301 0.99733 0.88092 1.22188 1.01587 1.00131 0.98085 1.46015 1.16424 1.11573 1.62503 1.20002 0.82045 0.88730 0.77952 1.90682 1.51085 1.55925 1.42050 1.21555 0.99559 0.93992 0.96520 1.21913 1.01936 0.78866 0.94924 1.92774 1.93547 1.36238 1.96304 1.22306 0.98241 1.00047 0.97303 1.22634 0.83995 1.03002 0.92203 1.87901 1.16389 1.61786 1.63816 1.22776 0.93108 0.96418 0.90322 1.22016 0.93533 1.02744 0.98247 1.42773 1.79599 1.09341 1.07115 1.18956 1.37045 0.95424 0.85591 0.89443 1.24631 1.01258 0.97219 0.95670 1.69686 1.52339 1.35433 1.00379 0.86614 0.77977 0.87191 0.77091 1.21314 1.21856 1.20362 0.92366 0.93632 0.94419 0.91571 0.90689 0.92895 0.91792 0.92434 0.77190 0.90328 0.90235 0.90388 0.89635 0.88430 0.91337 0.89313 0.90280 0.90231 0.90315 0.80789 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.49 37.16 0.35 -2.27 16 2 C 0.18 2.99 2.84 -67.93 -0.19 2.80 16 3 H 0.05 0.92 7.56 -51.93 -0.39 0.53 16 4 C -0.14 -1.76 4.29 -26.73 -0.11 -1.87 16 5 C 0.14 1.98 2.52 -67.93 -0.17 1.81 16 6 H 0.10 1.88 7.06 -51.93 -0.37 1.52 16 7 C -0.16 -1.88 9.48 37.16 0.35 -1.52 16 8 N -0.71 -8.89 4.22 -53.81 -0.23 -9.12 16 9 C 0.53 7.63 5.11 -10.99 -0.06 7.57 16 10 O -0.52 -9.60 13.51 5.56 0.08 -9.53 16 11 C -0.11 -1.37 0.49 -155.48 -0.08 -1.44 16 12 C 0.08 0.74 6.28 37.16 0.23 0.97 16 13 F -0.21 -2.29 16.22 2.25 0.04 -2.25 16 14 C -0.14 -1.75 4.78 -26.49 -0.13 -1.88 16 15 C 0.06 0.96 6.62 37.31 0.25 1.21 16 16 O -0.38 -6.77 10.77 -35.23 -0.38 -7.15 16 17 C 0.05 0.80 6.55 37.20 0.24 1.04 16 18 C -0.13 -1.66 4.47 -26.59 -0.12 -1.78 16 19 N -0.75 -16.39 4.30 -53.42 -0.23 -16.62 16 20 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 21 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 22 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 23 N -0.93 -29.11 13.97 55.49 0.78 -28.33 16 24 Si 0.88 22.31 27.74 -169.99 -4.72 17.59 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.28 -6.63 6.51 56.52 0.37 -6.27 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.39 3.80 7.43 -40.82 -0.30 3.50 16 37 H 0.08 0.55 7.57 -51.93 -0.39 0.16 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.82 7.51 -51.93 -0.39 0.43 16 40 H 0.09 1.02 7.73 -51.93 -0.40 0.62 16 41 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 42 H 0.07 1.36 7.38 -51.93 -0.38 0.98 16 43 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.08 1.49 5.81 -51.93 -0.30 1.18 16 45 H 0.08 0.98 7.72 -51.93 -0.40 0.58 16 46 H 0.08 0.98 8.03 -51.93 -0.42 0.56 16 47 H 0.36 7.99 5.66 -40.82 -0.23 7.76 16 48 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -32.97 375.65 -6.90 -39.88 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -8.22 Total: 11.73 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 0.32 Total: -1.86 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.32 Total: -54.07 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.30 Total: -16.68 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.72 Total: 17.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.97 -6.90 -39.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135476965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.803 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds