Wall clock time and date at job start Tue Mar 31 2020 10:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21282 * 119.99548 * 0.02562 * 9 8 5 11 11 C 1.50690 * 120.00466 * 180.02562 * 9 8 5 12 12 C 1.53007 * 109.54052 * 60.00437 * 11 9 8 13 13 F 1.39903 * 109.47116 * 179.97438 * 12 11 9 14 14 C 1.53177 * 109.54754 * 299.83151 * 11 9 8 15 15 C 1.53288 * 109.05946 * 297.02646 * 14 11 9 16 16 O 1.42897 * 109.46052 * 302.44013 * 15 14 11 17 17 C 1.42907 * 114.09402 * 61.16031 * 16 15 14 18 18 C 1.53087 * 109.41606 * 298.83874 * 17 16 15 19 19 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 2 1 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 2 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 2 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 29 29 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 31 31 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 32 32 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 33 33 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 34 34 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 35 35 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 36 36 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 37 37 H 1.08998 * 109.46955 * 300.00049 * 12 11 9 38 38 H 1.09001 * 109.47168 * 60.00487 * 12 11 9 39 39 H 1.09004 * 109.52180 * 57.01034 * 14 11 9 40 40 H 1.09003 * 109.52618 * 177.20688 * 14 11 9 41 41 H 1.09003 * 109.45461 * 182.44524 * 15 14 11 42 42 H 1.08994 * 109.46646 * 62.44603 * 15 14 11 43 43 H 1.08999 * 109.47887 * 178.85705 * 17 16 15 44 44 H 1.09000 * 109.48890 * 58.83083 * 17 16 15 45 45 H 1.08995 * 109.52589 * 297.70461 * 18 17 16 46 46 H 1.08999 * 109.57363 * 177.54564 * 18 17 16 47 47 H 0.97000 * 119.99792 * 264.99726 * 19 2 1 48 48 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9356 0.4341 0.5733 11 6 5.5555 2.6563 1.2710 12 6 5.5200 3.0105 2.7591 13 9 5.8869 4.3499 2.9285 14 6 4.5793 3.5560 0.5068 15 6 4.6811 3.2464 -0.9910 16 8 6.0282 3.4397 -1.4267 17 6 6.9783 2.5914 -0.7785 18 6 6.9702 2.8746 0.7259 19 7 2.0183 -0.6907 -1.1962 20 6 2.1491 -0.0075 -2.3757 21 1 1.8926 1.0405 -2.4242 22 6 2.6172 -0.6605 -3.5077 23 7 2.7480 -0.0026 -4.6401 24 14 3.0615 -2.4730 -3.4239 25 1 1.8659 -3.2913 -3.7497 26 1 4.1416 -2.7636 -4.4007 27 1 3.5302 -2.8049 -2.0543 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 1.7517 -1.7715 1.2056 33 1 3.6546 -1.0593 3.4193 34 1 3.8002 -2.4819 2.3595 35 1 5.1715 -1.3617 2.5381 36 1 3.3284 1.4129 1.9028 37 1 4.5121 2.8578 3.1449 38 1 6.2174 2.3718 3.3013 39 1 3.5629 3.3664 0.8519 40 1 4.8351 4.6013 0.6805 41 1 4.0206 3.9133 -1.5453 42 1 4.3862 2.2123 -1.1690 43 1 7.9728 2.7865 -1.1798 44 1 6.7138 1.5486 -0.9536 45 1 7.2742 3.9060 0.9041 46 1 7.6624 2.1989 1.2284 47 1 2.2490 -1.6318 -1.1526 48 1 3.0748 -0.4589 -5.4313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135476965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:29 Heat of formation + Delta-G solvation = -159.409902 kcal Electronic energy + Delta-G solvation = -29604.231880 eV Core-core repulsion = 25607.349065 eV Total energy + Delta-G solvation = -3996.882815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.67160 -41.87309 -39.54874 -38.30699 -36.16354 -35.60418 -34.05592 -32.45035 -31.71405 -30.89915 -28.99351 -27.59005 -25.36426 -24.76015 -24.73811 -23.53003 -22.08307 -21.31457 -20.61119 -19.62996 -18.04811 -17.66349 -17.42018 -17.14739 -16.72592 -16.56850 -16.46851 -16.15546 -15.84968 -15.46376 -15.38137 -15.28066 -14.69560 -14.58550 -14.50376 -14.23717 -14.00629 -13.49259 -13.40902 -13.29298 -13.22166 -12.98449 -12.82095 -12.68949 -12.59060 -12.40029 -12.35462 -12.28904 -11.99305 -11.85805 -11.69047 -11.51314 -11.43993 -11.42424 -10.95793 -10.82811 -10.38918 -9.98462 -9.24970 -7.99558 -5.28910 1.31820 1.36221 1.41771 1.56505 2.15217 2.47981 2.89645 3.24142 3.33962 3.39666 3.44262 3.66901 3.75275 3.86730 3.92097 4.08789 4.11859 4.19879 4.29888 4.35856 4.38563 4.48990 4.53498 4.57060 4.67331 4.70673 4.74945 4.78471 4.79106 4.83702 4.91655 4.95966 5.00453 5.02607 5.09801 5.13633 5.24177 5.34639 5.40263 5.61652 5.62707 5.82379 6.18924 6.24705 6.56973 7.13143 7.28691 7.92402 8.06940 9.22307 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.012516 B = 0.005613 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.608143 B = 4986.977180 C = 5880.978462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.167 3.833 3 H 0.046 0.954 4 C -0.122 4.122 5 C 0.141 3.859 6 H 0.047 0.953 7 C -0.151 4.151 8 N -0.702 5.702 9 C 0.524 3.476 10 O -0.569 6.569 11 C -0.109 4.109 12 C 0.084 3.916 13 F -0.214 7.214 14 C -0.130 4.130 15 C 0.057 3.943 16 O -0.402 6.402 17 C 0.046 3.954 18 C -0.122 4.122 19 N -0.749 5.749 20 C -0.206 4.206 21 H 0.057 0.943 22 C -0.066 4.066 23 N -0.985 5.985 24 Si 0.942 3.058 25 H -0.277 1.277 26 H -0.307 1.307 27 H -0.257 1.257 28 H 0.024 0.976 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.412 0.588 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.022 0.978 43 H 0.102 0.898 44 H 0.043 0.957 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.360 0.640 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 4.410 23.022 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.060 3.940 3 H 0.064 0.936 4 C -0.160 4.160 5 C 0.037 3.963 6 H 0.065 0.935 7 C -0.210 4.210 8 N -0.354 5.354 9 C 0.310 3.690 10 O -0.448 6.448 11 C -0.113 4.113 12 C 0.029 3.971 13 F -0.195 7.195 14 C -0.167 4.167 15 C -0.019 4.019 16 O -0.321 6.321 17 C -0.030 4.030 18 C -0.159 4.159 19 N -0.392 5.392 20 C -0.337 4.337 21 H 0.075 0.925 22 C -0.257 4.257 23 N -0.636 5.636 24 Si 0.772 3.228 25 H -0.203 1.203 26 H -0.235 1.235 27 H -0.182 1.182 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.249 0.751 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.041 0.959 43 H 0.120 0.880 44 H 0.061 0.939 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.193 0.807 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.437 4.175 22.417 22.933 hybrid contribution 0.151 -1.075 -1.040 1.504 sum 2.588 3.099 21.377 21.755 Atomic orbital electron populations 1.22293 0.97376 1.01275 1.00813 1.20521 0.92732 0.95511 0.85276 0.93576 1.22156 0.92732 1.02655 0.98498 1.20922 0.95670 0.81131 0.98596 0.93487 1.22086 1.00562 1.00153 0.98151 1.45897 1.16091 1.11590 1.61779 1.20417 0.82113 0.89364 0.77099 1.90672 1.52659 1.57383 1.44066 1.21546 0.98564 0.92214 0.98993 1.22006 1.04390 0.78516 0.92180 1.92768 1.93785 1.36881 1.96109 1.22238 0.99853 1.00863 0.93782 1.22594 0.83483 1.00162 0.95702 1.87857 1.17112 1.61991 1.65124 1.22821 0.93124 0.94158 0.92902 1.21958 0.94720 1.03575 0.95697 1.42849 1.79718 1.09390 1.07234 1.18917 1.33459 0.94153 0.87168 0.92534 1.25360 1.03119 1.01603 0.95661 1.69867 1.55329 1.37219 1.01223 0.85585 0.77405 0.82300 0.77553 1.20309 1.23505 1.18165 0.95622 0.93242 0.90208 0.86888 0.89863 0.89602 0.91203 0.94127 0.75117 0.87022 0.88798 0.87984 0.88165 0.88531 0.95948 0.88023 0.93903 0.88854 0.89663 0.80716 0.93924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 9.49 71.98 0.68 -3.85 16 2 C 0.17 5.29 2.84 44.99 0.13 5.42 16 3 H 0.05 1.53 7.56 -2.39 -0.02 1.51 16 4 C -0.12 -2.69 4.29 30.60 0.13 -2.56 16 5 C 0.14 3.63 2.52 44.99 0.11 3.75 16 6 H 0.05 1.76 7.06 -2.38 -0.02 1.74 16 7 C -0.15 -3.02 9.48 71.98 0.68 -2.33 16 8 N -0.70 -15.84 4.22 -442.55 -1.87 -17.71 16 9 C 0.52 14.74 5.11 87.65 0.45 15.19 16 10 O -0.57 -21.61 13.51 -3.03 -0.04 -21.65 16 11 C -0.11 -2.46 0.49 -52.81 -0.03 -2.48 16 12 C 0.08 1.23 6.28 71.98 0.45 1.68 16 13 F -0.21 -3.88 16.22 44.97 0.73 -3.15 16 14 C -0.13 -3.01 4.78 30.75 0.15 -2.86 16 15 C 0.06 1.97 6.62 72.08 0.48 2.44 16 16 O -0.40 -14.97 10.77 -148.98 -1.60 -16.57 16 17 C 0.05 1.54 6.55 72.01 0.47 2.01 16 18 C -0.12 -3.07 4.47 30.68 0.14 -2.94 16 19 N -0.75 -32.85 4.30 -322.93 -1.39 -34.24 16 20 C -0.21 -11.47 10.41 84.04 0.87 -10.60 16 21 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 23 N -0.98 -64.95 13.97 21.65 0.30 -64.64 16 24 Si 0.94 47.59 27.74 68.60 1.90 49.50 16 25 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 26 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 27 H -0.26 -11.88 6.51 99.48 0.65 -11.23 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.41 6.21 7.43 -92.71 -0.69 5.52 16 37 H 0.11 0.94 7.57 -2.39 -0.02 0.92 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 1.85 7.51 -2.38 -0.02 1.83 16 40 H 0.10 2.11 7.73 -2.39 -0.02 2.10 16 41 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.02 0.96 7.38 -2.39 -0.02 0.94 16 43 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 44 H 0.04 1.74 5.81 -2.39 -0.01 1.73 16 45 H 0.09 2.12 7.72 -2.39 -0.02 2.10 16 46 H 0.08 2.04 8.03 -2.39 -0.02 2.02 16 47 H 0.36 15.74 5.66 -92.71 -0.52 15.21 16 48 H 0.25 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -79.30 375.65 2.90 -76.40 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.32 Total: 32.75 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.19 Total: -0.67 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -2.95 Total: -116.59 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.65 Total: -38.23 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.73 Total: -3.15 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.90 Total: 49.50 kcal Total: -79.30 2.90 -76.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135476965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.010 kcal (2) G-P(sol) polarization free energy of solvation -79.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds