Wall clock time and date at job start Tue Mar 31 2020 10:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 113.99962 * 2 1 4 4 C 1.53004 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46984 * 184.39468 * 4 3 2 6 6 N 1.46502 * 109.46091 * 303.05499 * 5 4 3 7 7 C 1.34767 * 119.99949 * 303.01867 * 6 5 4 8 8 O 1.21284 * 120.00221 * 355.02138 * 7 6 5 9 9 C 1.50709 * 120.00152 * 175.03069 * 7 6 5 10 10 C 1.53000 * 109.47289 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47074 * 179.97438 * 10 9 7 12 12 F 1.39896 * 109.46933 * 179.97438 * 11 10 9 13 13 C 1.53037 * 109.45178 * 63.02213 * 5 4 3 14 14 C 1.53193 * 109.31341 * 181.37778 * 13 5 4 15 15 N 1.46926 * 108.77746 * 305.36343 * 14 13 5 16 16 C 1.36929 * 120.63153 * 233.63025 * 15 14 13 17 17 H 1.08005 * 120.00241 * 31.76764 * 16 15 14 18 18 C 1.38813 * 120.00025 * 211.76370 * 16 15 14 19 19 N 1.31619 * 120.00035 * 10.84606 * 18 16 15 20 20 Si 1.86800 * 120.00221 * 190.84525 * 18 16 15 21 21 H 1.48506 * 109.47401 * 89.99874 * 20 18 16 22 22 H 1.48499 * 109.47294 * 210.00226 * 20 18 16 23 23 H 1.48501 * 109.47189 * 330.00075 * 20 18 16 24 24 C 1.46930 * 118.73559 * 53.60909 * 15 14 13 25 25 C 1.53043 * 109.46068 * 183.08267 * 5 4 3 26 26 H 1.09002 * 109.47542 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46876 * 299.99931 * 1 2 3 28 28 H 1.08996 * 109.47628 * 59.99702 * 1 2 3 29 29 H 1.08997 * 109.47243 * 60.00607 * 3 2 1 30 30 H 1.08992 * 109.47424 * 300.00198 * 3 2 1 31 31 H 1.08995 * 109.47403 * 64.39463 * 4 3 2 32 32 H 1.09005 * 109.47037 * 304.39313 * 4 3 2 33 33 H 0.96999 * 120.00156 * 123.01551 * 6 5 4 34 34 H 1.08997 * 109.46978 * 59.99051 * 9 7 6 35 35 H 1.08998 * 109.46673 * 299.99621 * 9 7 6 36 36 H 1.08998 * 109.46976 * 299.99463 * 10 9 7 37 37 H 1.08995 * 109.47298 * 59.99123 * 10 9 7 38 38 H 1.08998 * 109.46849 * 299.99625 * 11 10 9 39 39 H 1.08997 * 109.47017 * 59.99186 * 11 10 9 40 40 H 1.08996 * 109.49837 * 301.33157 * 13 5 4 41 41 H 1.09008 * 109.49931 * 61.42546 * 13 5 4 42 42 H 1.09007 * 109.58573 * 185.57934 * 14 13 5 43 43 H 1.08996 * 109.58566 * 65.15934 * 14 13 5 44 44 H 0.96997 * 119.99918 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.58574 * 186.60430 * 24 15 14 46 46 H 1.08995 * 109.69978 * 66.24669 * 24 15 14 47 47 H 1.08995 * 109.49842 * 298.58335 * 25 5 4 48 48 H 1.09000 * 109.49339 * 58.67766 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1575 2.5780 0.1099 6 7 3.6741 3.4169 -0.9896 7 6 3.8558 3.0252 -2.2662 8 8 4.4977 2.0250 -2.5082 9 6 3.2615 3.8300 -3.3933 10 6 3.6139 3.1738 -4.7297 11 6 3.0101 3.9906 -5.8739 12 9 3.3328 3.3909 -7.0959 13 6 3.7593 3.2093 1.4459 14 6 4.3553 4.6175 1.5384 15 7 5.8057 4.5326 1.3196 16 6 6.6806 5.0666 2.2275 17 1 6.4256 5.0852 3.2769 18 6 7.8955 5.5840 1.7993 19 7 8.1201 5.7585 0.5142 20 14 9.2116 6.0324 3.0467 21 1 10.0825 4.8549 3.2925 22 1 10.0313 7.1531 2.5203 23 1 8.5672 6.4456 4.3193 24 6 6.2993 3.8634 0.1083 25 6 5.6816 2.4637 0.0319 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.8622 0.7133 -0.9275 32 1 3.8521 0.5770 0.8472 33 1 3.2233 4.2543 -0.7988 34 1 3.6645 4.8425 -3.3685 35 1 2.1780 3.8674 -3.2810 36 1 4.6975 3.1368 -4.8418 37 1 3.2113 2.1612 -4.7547 38 1 1.9265 4.0272 -5.7617 39 1 3.4123 5.0033 -5.8490 40 1 2.6729 3.2690 1.5107 41 1 4.1400 2.5986 2.2647 42 1 4.1586 5.0334 2.5267 43 1 3.9073 5.2547 0.7760 44 1 8.9691 6.1197 0.2149 45 1 7.3853 3.7816 0.1529 46 1 6.0120 4.4382 -0.7720 47 1 6.0442 1.8600 0.8638 48 1 5.9633 1.9927 -0.9099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151248030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:56 Heat of formation + Delta-G solvation = -126.602013 kcal Electronic energy + Delta-G solvation = -28444.225851 eV Core-core repulsion = 24448.765693 eV Total energy + Delta-G solvation = -3995.460158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -47.70047 -40.35048 -37.99524 -37.36945 -34.64414 -33.94285 -32.03746 -31.44963 -30.14268 -28.94192 -27.23088 -26.53764 -24.82916 -23.15965 -22.58087 -21.98430 -20.66671 -20.13776 -18.67613 -17.26572 -16.80696 -16.61809 -16.38365 -15.99624 -15.78338 -15.12506 -15.06909 -14.88878 -14.81031 -14.40203 -13.91729 -13.64539 -13.51272 -13.40889 -13.09821 -12.98924 -12.57265 -12.36664 -11.96448 -11.71275 -11.58408 -11.49285 -11.44810 -11.14658 -11.07182 -11.03053 -10.86145 -10.75728 -10.74067 -10.38063 -10.27090 -10.01272 -9.77607 -9.76553 -9.46456 -9.08887 -8.59758 -8.48620 -6.63295 -5.79929 -3.28980 2.92833 3.36014 3.40818 3.42969 3.43569 3.76659 4.46518 4.53325 4.63407 4.65689 4.87939 5.01418 5.07591 5.14184 5.17190 5.23449 5.31057 5.33493 5.36362 5.43901 5.45056 5.48406 5.52374 5.60263 5.64303 5.77116 5.88976 5.99086 6.11717 6.15025 6.17484 6.34930 6.39847 6.50074 6.62969 6.68363 6.79759 6.88521 7.06518 7.16961 7.41020 7.71381 7.77955 7.87459 8.46158 8.55802 9.20775 9.81903 10.39886 11.27513 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.010269 B = 0.004336 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.100622 B = 6456.495691 C = 8638.759624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.067 3.933 4 C -0.129 4.129 5 C 0.194 3.806 6 N -0.713 5.713 7 C 0.515 3.485 8 O -0.535 6.535 9 C -0.141 4.141 10 C -0.137 4.137 11 C 0.061 3.939 12 F -0.220 7.220 13 C -0.141 4.141 14 C 0.147 3.853 15 N -0.590 5.590 16 C -0.256 4.256 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.180 3.820 25 C -0.150 4.150 26 H 0.082 0.918 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.398 0.602 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.014 0.986 44 H 0.254 0.746 45 H 0.084 0.916 46 H 0.017 0.983 47 H 0.059 0.941 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.873 -4.397 -5.873 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.009 4.009 4 C -0.168 4.168 5 C 0.109 3.891 6 N -0.365 5.365 7 C 0.301 3.699 8 O -0.412 6.412 9 C -0.181 4.181 10 C -0.175 4.175 11 C 0.006 3.994 12 F -0.201 7.201 13 C -0.180 4.180 14 C 0.020 3.980 15 N -0.313 5.313 16 C -0.386 4.386 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.055 3.945 25 C -0.190 4.190 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.031 0.969 44 H 0.064 0.936 45 H 0.102 0.898 46 H 0.035 0.965 47 H 0.078 0.922 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.140 -5.212 -6.130 17.145 hybrid contribution 0.253 0.983 0.704 1.235 sum -14.887 -4.229 -5.426 16.400 Atomic orbital electron populations 1.22689 0.81662 1.02375 0.99679 1.87888 1.19179 1.28773 1.95363 1.22592 0.94730 0.83952 0.99662 1.21977 0.92306 0.97835 1.04649 1.20185 0.95195 0.88028 0.85697 1.46124 1.60127 1.24846 1.05421 1.20361 0.80176 0.85589 0.83755 1.90650 1.39667 1.26870 1.84036 1.21558 1.02153 1.00911 0.93511 1.21879 1.03437 1.00183 0.91982 1.22018 1.00797 0.96839 0.79698 1.92763 1.94651 1.86037 1.46654 1.22419 0.99170 1.00544 0.95908 1.20864 0.86552 0.91988 0.98619 1.44019 0.99068 1.64507 1.23722 1.19161 0.97953 1.32963 0.88501 0.91907 1.25160 0.99869 0.98343 0.95850 1.69979 1.23973 1.47823 1.12863 0.86281 0.81875 0.77797 0.80704 1.21390 1.21716 1.20442 1.20670 0.99386 0.86844 0.87623 1.22593 0.92608 1.01952 1.01850 0.89942 0.94287 0.94426 0.93290 0.93918 0.89212 0.90720 0.76750 0.88526 0.89128 0.89743 0.90136 0.90973 0.90674 0.92573 0.90589 0.92612 0.96872 0.93620 0.89776 0.96497 0.92227 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.43 10.70 -35.23 -0.38 -5.81 16 3 C 0.07 0.88 5.50 37.16 0.20 1.08 16 4 C -0.13 -1.97 4.32 -26.73 -0.12 -2.08 16 5 C 0.19 3.10 0.35 -131.78 -0.05 3.05 16 6 N -0.71 -10.08 3.36 -47.57 -0.16 -10.24 16 7 C 0.52 7.45 7.00 -10.99 -0.08 7.38 16 8 O -0.54 -9.62 12.26 5.55 0.07 -9.55 16 9 C -0.14 -1.44 5.70 -27.88 -0.16 -1.60 16 10 C -0.14 -1.48 4.96 -26.73 -0.13 -1.61 16 11 C 0.06 0.55 7.55 37.16 0.28 0.83 16 12 F -0.22 -2.65 17.36 2.25 0.04 -2.61 16 13 C -0.14 -2.18 4.72 -26.61 -0.13 -2.31 16 14 C 0.15 2.76 6.24 -3.71 -0.02 2.74 16 15 N -0.59 -14.04 2.98 -172.32 -0.51 -14.56 16 16 C -0.26 -6.82 9.57 -15.06 -0.14 -6.97 16 17 H 0.06 1.65 7.85 -52.48 -0.41 1.24 16 18 C 0.01 0.18 5.04 -17.43 -0.09 0.10 16 19 N -0.90 -25.81 11.09 55.49 0.62 -25.20 16 20 Si 0.90 21.45 29.57 -169.99 -5.03 16.43 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.18 4.24 4.99 -3.71 -0.02 4.22 16 25 C -0.15 -2.96 4.71 -26.61 -0.13 -3.09 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.59 6.27 -51.93 -0.33 0.27 16 30 H 0.04 0.54 7.46 -51.93 -0.39 0.15 16 31 H 0.09 1.56 6.22 -51.93 -0.32 1.24 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.40 4.92 7.18 -40.82 -0.29 4.63 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.72 6.35 -51.93 -0.33 0.39 16 41 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 42 H 0.06 1.05 7.93 -51.92 -0.41 0.63 16 43 H 0.01 0.24 6.88 -51.93 -0.36 -0.11 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 45 H 0.08 2.29 6.14 -51.93 -0.32 1.97 16 46 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.07 1.50 6.26 -51.93 -0.33 1.18 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -31.72 372.52 -7.29 -39.01 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.09 Total: 3.76 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 0.54 Total: 3.16 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.06 Total: -49.99 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.31 Total: -15.36 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.72 -7.29 -39.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151248030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.594 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds