Wall clock time and date at job start Tue Mar 31 2020 10:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 113.99962 * 2 1 4 4 C 1.53004 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46984 * 184.39468 * 4 3 2 6 6 N 1.46502 * 109.46091 * 303.05499 * 5 4 3 7 7 C 1.34767 * 119.99949 * 303.01867 * 6 5 4 8 8 O 1.21284 * 120.00221 * 355.02138 * 7 6 5 9 9 C 1.50709 * 120.00152 * 175.03069 * 7 6 5 10 10 C 1.53000 * 109.47289 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47074 * 179.97438 * 10 9 7 12 12 F 1.39896 * 109.46933 * 179.97438 * 11 10 9 13 13 C 1.53037 * 109.45178 * 63.02213 * 5 4 3 14 14 C 1.53193 * 109.31341 * 181.37778 * 13 5 4 15 15 N 1.46926 * 108.77746 * 305.36343 * 14 13 5 16 16 C 1.36929 * 120.63153 * 233.63025 * 15 14 13 17 17 H 1.08005 * 120.00241 * 31.76764 * 16 15 14 18 18 C 1.38813 * 120.00025 * 211.76370 * 16 15 14 19 19 N 1.31619 * 120.00035 * 10.84606 * 18 16 15 20 20 Si 1.86800 * 120.00221 * 190.84525 * 18 16 15 21 21 H 1.48506 * 109.47401 * 89.99874 * 20 18 16 22 22 H 1.48499 * 109.47294 * 210.00226 * 20 18 16 23 23 H 1.48501 * 109.47189 * 330.00075 * 20 18 16 24 24 C 1.46930 * 118.73559 * 53.60909 * 15 14 13 25 25 C 1.53043 * 109.46068 * 183.08267 * 5 4 3 26 26 H 1.09002 * 109.47542 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46876 * 299.99931 * 1 2 3 28 28 H 1.08996 * 109.47628 * 59.99702 * 1 2 3 29 29 H 1.08997 * 109.47243 * 60.00607 * 3 2 1 30 30 H 1.08992 * 109.47424 * 300.00198 * 3 2 1 31 31 H 1.08995 * 109.47403 * 64.39463 * 4 3 2 32 32 H 1.09005 * 109.47037 * 304.39313 * 4 3 2 33 33 H 0.96999 * 120.00156 * 123.01551 * 6 5 4 34 34 H 1.08997 * 109.46978 * 59.99051 * 9 7 6 35 35 H 1.08998 * 109.46673 * 299.99621 * 9 7 6 36 36 H 1.08998 * 109.46976 * 299.99463 * 10 9 7 37 37 H 1.08995 * 109.47298 * 59.99123 * 10 9 7 38 38 H 1.08998 * 109.46849 * 299.99625 * 11 10 9 39 39 H 1.08997 * 109.47017 * 59.99186 * 11 10 9 40 40 H 1.08996 * 109.49837 * 301.33157 * 13 5 4 41 41 H 1.09008 * 109.49931 * 61.42546 * 13 5 4 42 42 H 1.09007 * 109.58573 * 185.57934 * 14 13 5 43 43 H 1.08996 * 109.58566 * 65.15934 * 14 13 5 44 44 H 0.96997 * 119.99918 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.58574 * 186.60430 * 24 15 14 46 46 H 1.08995 * 109.69978 * 66.24669 * 24 15 14 47 47 H 1.08995 * 109.49842 * 298.58335 * 25 5 4 48 48 H 1.09000 * 109.49339 * 58.67766 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1575 2.5780 0.1099 6 7 3.6741 3.4169 -0.9896 7 6 3.8558 3.0252 -2.2662 8 8 4.4977 2.0250 -2.5082 9 6 3.2615 3.8300 -3.3933 10 6 3.6139 3.1738 -4.7297 11 6 3.0101 3.9906 -5.8739 12 9 3.3328 3.3909 -7.0959 13 6 3.7593 3.2093 1.4459 14 6 4.3553 4.6175 1.5384 15 7 5.8057 4.5326 1.3196 16 6 6.6806 5.0666 2.2275 17 1 6.4256 5.0852 3.2769 18 6 7.8955 5.5840 1.7993 19 7 8.1201 5.7585 0.5142 20 14 9.2116 6.0324 3.0467 21 1 10.0825 4.8549 3.2925 22 1 10.0313 7.1531 2.5203 23 1 8.5672 6.4456 4.3193 24 6 6.2993 3.8634 0.1083 25 6 5.6816 2.4637 0.0319 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.8622 0.7133 -0.9275 32 1 3.8521 0.5770 0.8472 33 1 3.2233 4.2543 -0.7988 34 1 3.6645 4.8425 -3.3685 35 1 2.1780 3.8674 -3.2810 36 1 4.6975 3.1368 -4.8418 37 1 3.2113 2.1612 -4.7547 38 1 1.9265 4.0272 -5.7617 39 1 3.4123 5.0033 -5.8490 40 1 2.6729 3.2690 1.5107 41 1 4.1400 2.5986 2.2647 42 1 4.1586 5.0334 2.5267 43 1 3.9073 5.2547 0.7760 44 1 8.9691 6.1197 0.2149 45 1 7.3853 3.7816 0.1529 46 1 6.0120 4.4382 -0.7720 47 1 6.0442 1.8600 0.8638 48 1 5.9633 1.9927 -0.9099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151248030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:55 Heat of formation + Delta-G solvation = -147.006169 kcal Electronic energy + Delta-G solvation = -28445.110641 eV Core-core repulsion = 24448.765693 eV Total energy + Delta-G solvation = -3996.344949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.53422 -41.62078 -39.15753 -38.58769 -36.25130 -34.90544 -33.61603 -32.85665 -31.77205 -30.40996 -28.20310 -27.52407 -26.36506 -24.63203 -23.82914 -23.21118 -22.03817 -21.38947 -20.10150 -18.80828 -18.15809 -17.52715 -17.34052 -16.94327 -16.82462 -16.68209 -16.23041 -16.06142 -15.80798 -15.63079 -15.42507 -15.17016 -14.93241 -14.65800 -14.49710 -14.16513 -13.88884 -13.73436 -13.20623 -13.01840 -12.83446 -12.74054 -12.71806 -12.62644 -12.38650 -12.23197 -12.16029 -12.06049 -11.97357 -11.91718 -11.78163 -11.51865 -11.30817 -11.26064 -10.59589 -10.53844 -10.36324 -9.88538 -8.58827 -7.85022 -5.35965 1.45922 1.47943 1.55750 1.80435 2.30706 2.51129 2.83369 3.31271 3.60888 3.72904 3.78445 3.85094 3.91353 3.99900 4.13324 4.18881 4.21905 4.34697 4.39804 4.45151 4.47488 4.55047 4.56209 4.60374 4.67707 4.71958 4.77426 4.81499 4.85666 4.94469 5.01138 5.04603 5.08187 5.14964 5.19961 5.28678 5.31895 5.37754 5.52171 5.65446 5.71737 5.80798 6.28221 6.42737 6.75099 7.17807 7.44523 7.88698 8.40707 9.19834 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.010269 B = 0.004336 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.100622 B = 6456.495691 C = 8638.759624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.075 3.925 4 C -0.121 4.121 5 C 0.203 3.797 6 N -0.708 5.708 7 C 0.506 3.494 8 O -0.577 6.577 9 C -0.131 4.131 10 C -0.134 4.134 11 C 0.061 3.939 12 F -0.240 7.240 13 C -0.127 4.127 14 C 0.142 3.858 15 N -0.607 5.607 16 C -0.261 4.261 17 H 0.067 0.933 18 C -0.048 4.048 19 N -0.935 5.935 20 Si 0.963 3.037 21 H -0.291 1.291 22 H -0.296 1.296 23 H -0.265 1.265 24 C 0.197 3.803 25 C -0.139 4.139 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.410 0.590 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.030 0.970 44 H 0.247 0.753 45 H 0.037 0.963 46 H 0.000 1.000 47 H 0.048 0.952 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.116 -3.642 -5.117 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.001 4.001 4 C -0.159 4.159 5 C 0.116 3.884 6 N -0.360 5.360 7 C 0.294 3.706 8 O -0.456 6.456 9 C -0.170 4.170 10 C -0.172 4.172 11 C 0.007 3.993 12 F -0.221 7.221 13 C -0.166 4.166 14 C 0.017 3.983 15 N -0.331 5.331 16 C -0.392 4.392 17 H 0.085 0.915 18 C -0.243 4.243 19 N -0.580 5.580 20 Si 0.792 3.208 21 H -0.218 1.218 22 H -0.222 1.222 23 H -0.189 1.189 24 C 0.071 3.929 25 C -0.179 4.179 26 H 0.112 0.888 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.247 0.753 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.018 0.982 47 H 0.067 0.933 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.439 -4.444 -5.355 19.708 hybrid contribution 1.235 0.694 0.472 1.493 sum -17.204 -3.750 -4.883 18.272 Atomic orbital electron populations 1.22916 0.79476 1.03691 1.00922 1.87845 1.21593 1.29092 1.95600 1.22476 0.92611 0.84177 1.00875 1.21786 0.94513 0.96594 1.03038 1.19926 0.92204 0.89297 0.86931 1.46041 1.59878 1.25079 1.05017 1.21189 0.79443 0.85344 0.84602 1.90646 1.41452 1.28931 1.84614 1.21571 1.04348 1.00297 0.90815 1.21809 1.01602 1.00223 0.93610 1.22200 1.02678 0.96782 0.77679 1.92723 1.94951 1.86504 1.47962 1.22287 1.01445 0.97879 0.94988 1.21080 0.83596 0.94344 0.99297 1.44219 1.01173 1.64621 1.23073 1.19511 0.98654 1.31732 0.89277 0.91518 1.25866 1.01970 0.99160 0.97312 1.70142 1.24005 1.49323 1.14577 0.85326 0.79336 0.76959 0.79169 1.21771 1.22248 1.18944 1.20278 0.96850 0.88563 0.87209 1.22381 0.95993 0.99037 1.00486 0.88782 0.92817 0.93302 0.91466 0.93046 0.91802 0.91277 0.75291 0.87053 0.85046 0.92831 0.91492 0.87734 0.88922 0.88309 0.91313 0.92230 0.95242 0.94384 0.94404 0.98233 0.93310 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.67 10.70 -148.98 -1.59 -12.27 16 3 C 0.07 1.74 5.50 71.98 0.40 2.14 16 4 C -0.12 -3.56 4.32 30.60 0.13 -3.43 16 5 C 0.20 6.25 0.35 3.63 0.00 6.25 16 6 N -0.71 -18.73 3.36 -422.80 -1.42 -20.15 16 7 C 0.51 14.20 7.00 87.66 0.61 14.81 16 8 O -0.58 -21.29 12.26 -3.04 -0.04 -21.32 16 9 C -0.13 -2.35 5.70 29.85 0.17 -2.18 16 10 C -0.13 -2.80 4.96 30.59 0.15 -2.65 16 11 C 0.06 0.95 7.55 71.98 0.54 1.49 16 12 F -0.24 -5.57 17.36 44.97 0.78 -4.79 16 13 C -0.13 -3.59 4.72 30.67 0.14 -3.45 16 14 C 0.14 5.06 6.24 86.36 0.54 5.60 16 15 N -0.61 -28.94 2.98 -699.10 -2.09 -31.03 16 16 C -0.26 -13.98 9.57 84.03 0.80 -13.17 16 17 H 0.07 3.45 7.85 -2.91 -0.02 3.43 16 18 C -0.05 -2.63 5.04 84.86 0.43 -2.20 16 19 N -0.93 -55.24 11.09 21.65 0.24 -54.99 16 20 Si 0.96 44.73 29.57 68.60 2.03 46.76 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 24 C 0.20 9.58 4.99 86.36 0.43 10.02 16 25 C -0.14 -5.67 4.71 30.67 0.14 -5.52 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.07 1.31 6.27 -2.39 -0.01 1.30 16 30 H 0.05 1.11 7.46 -2.39 -0.02 1.09 16 31 H 0.06 2.25 6.22 -2.39 -0.01 2.23 16 32 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.41 8.82 7.18 -92.71 -0.67 8.15 16 34 H 0.11 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 37 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 2.03 6.35 -2.39 -0.02 2.02 16 41 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.06 2.08 7.93 -2.38 -0.02 2.06 16 43 H 0.03 0.98 6.88 -2.39 -0.02 0.96 16 44 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 45 H 0.04 2.18 6.14 -2.39 -0.01 2.16 16 46 H 0.00 -0.02 7.74 -2.39 -0.02 -0.04 16 47 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.06 2.47 6.26 -2.39 -0.01 2.45 16 Total: -1.00 -72.95 372.52 3.94 -69.00 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.28 Total: 19.42 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 5.75 Total: 9.37 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -3.26 Total: -106.17 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.63 Total: -33.59 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.78 Total: -4.79 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -72.95 3.94 -69.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151248030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.004 kcal (2) G-P(sol) polarization free energy of solvation -72.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds