Wall clock time and date at job start Tue Mar 31 2020 10:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47059 * 2 1 4 4 C 1.36939 * 119.99951 * 84.81836 * 3 2 1 5 5 H 1.07997 * 120.00029 * 38.40357 * 4 3 2 6 6 C 1.38816 * 119.99640 * 218.40615 * 4 3 2 7 7 N 1.31613 * 119.99994 * 12.34405 * 6 4 3 8 8 Si 1.86801 * 119.99648 * 192.34214 * 6 4 3 9 9 H 1.48496 * 109.47202 * 59.99855 * 8 6 4 10 10 H 1.48496 * 109.47043 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47018 * 300.00189 * 8 6 4 12 12 C 1.46501 * 120.00031 * 264.81940 * 3 2 1 13 13 H 1.08994 * 109.46884 * 182.21554 * 12 3 2 14 14 C 1.53004 * 109.47044 * 62.21054 * 12 3 2 15 15 C 1.53002 * 109.46749 * 302.21273 * 12 3 2 16 16 N 1.46496 * 109.47289 * 304.99832 * 15 12 3 17 17 C 1.34779 * 120.00008 * 180.02562 * 16 15 12 18 18 O 1.21283 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99881 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.54422 * 59.99827 * 19 17 16 21 21 F 1.39906 * 109.46886 * 180.02562 * 20 19 17 22 22 C 1.53181 * 109.54058 * 299.82017 * 19 17 16 23 23 C 1.53289 * 109.06185 * 297.02982 * 22 19 17 24 24 O 1.42898 * 109.46221 * 302.44535 * 23 22 19 25 25 C 1.42907 * 114.09477 * 61.15878 * 24 23 22 26 26 C 1.53089 * 109.41758 * 298.84208 * 25 24 23 27 27 H 1.09001 * 109.47382 * 299.99998 * 1 2 3 28 28 H 1.09000 * 109.47471 * 60.00185 * 1 2 3 29 29 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47471 * 119.99815 * 2 1 3 31 31 H 1.09001 * 109.47382 * 240.00002 * 2 1 3 32 32 H 0.97004 * 119.99481 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46905 * 179.97438 * 14 12 3 34 34 H 1.08993 * 109.47181 * 300.00143 * 14 12 3 35 35 H 1.09004 * 109.47023 * 60.00138 * 14 12 3 36 36 H 1.08999 * 109.47179 * 65.00367 * 15 12 3 37 37 H 1.08997 * 109.46913 * 184.99818 * 15 12 3 38 38 H 0.96999 * 120.00083 * 0.02562 * 16 15 12 39 39 H 1.09000 * 109.47225 * 299.99558 * 20 19 17 40 40 H 1.08994 * 109.47162 * 60.00200 * 20 19 17 41 41 H 1.08995 * 109.52591 * 57.02050 * 22 19 17 42 42 H 1.08998 * 109.52262 * 177.21546 * 22 19 17 43 43 H 1.08996 * 109.45722 * 182.44711 * 23 22 19 44 44 H 1.09003 * 109.46496 * 62.45257 * 23 22 19 45 45 H 1.09006 * 109.47807 * 178.85368 * 25 24 23 46 46 H 1.09005 * 109.48890 * 58.83674 * 25 24 23 47 47 H 1.09003 * 109.51998 * 297.70167 * 26 25 24 48 48 H 1.08997 * 109.57173 * 177.54953 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1455 2.0625 1.1811 5 1 2.4985 1.5508 2.0643 6 6 1.8208 3.4107 1.2431 7 7 1.1676 3.9766 0.2505 8 14 2.3109 4.4217 2.7355 9 1 3.7883 4.4013 2.8837 10 1 1.8511 5.8224 2.5571 11 1 1.6834 3.8451 3.9517 12 6 2.3705 2.0337 -1.2635 13 1 2.7478 3.0362 -1.0619 14 6 1.1293 2.1252 -2.1535 15 6 3.4498 1.2162 -1.9761 16 7 4.5918 1.0272 -1.0781 17 6 5.6689 0.3325 -1.4947 18 8 5.6926 -0.1366 -2.6129 19 6 6.8434 0.1377 -0.5707 20 6 6.3881 -0.6070 0.6858 21 9 7.4794 -0.7865 1.5427 22 6 7.4181 1.5021 -0.1778 23 6 7.9424 2.2053 -1.4349 24 8 8.9241 1.3815 -2.0669 25 6 8.4305 0.1112 -2.4969 26 6 7.9272 -0.6763 -1.2843 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 0.9404 4.9186 0.2940 33 1 1.3912 2.6110 -3.0935 34 1 0.7520 1.1227 -2.3551 35 1 0.3603 2.7076 -1.6459 36 1 3.0436 0.2445 -2.2567 37 1 3.7753 1.7461 -2.8712 38 1 4.5727 1.4021 -0.1837 39 1 5.6192 -0.0253 1.1944 40 1 5.9823 -1.5789 0.4052 41 1 6.6370 2.1077 0.2819 42 1 8.2360 1.3630 0.5292 43 1 8.3921 3.1585 -1.1569 44 1 7.1164 2.3806 -2.1243 45 1 9.2319 -0.4443 -2.9840 46 1 7.6109 0.2586 -3.2003 47 1 8.7553 -0.8594 -0.5996 48 1 7.5102 -1.6277 -1.6143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155237527.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:22 Heat of formation + Delta-G solvation = -127.518051 kcal Electronic energy + Delta-G solvation = -29457.833121 eV Core-core repulsion = 25462.333241 eV Total energy + Delta-G solvation = -3995.499880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.70044 -40.60929 -38.16597 -36.90782 -34.48705 -33.87906 -31.92673 -31.22066 -30.65753 -28.40488 -28.07364 -25.67866 -24.03988 -23.69581 -23.24969 -21.77459 -21.58122 -19.55032 -18.86213 -17.17340 -16.75510 -16.56258 -16.27339 -15.77520 -15.51516 -15.30294 -15.11200 -14.71916 -14.64066 -14.28146 -13.96013 -13.64776 -13.51708 -13.30707 -12.78987 -12.48411 -12.37967 -12.18447 -11.97541 -11.72728 -11.56021 -11.46549 -11.36737 -11.32917 -11.26624 -11.09622 -10.89391 -10.56735 -10.49230 -10.40553 -10.35155 -10.07578 -9.68635 -9.64815 -9.55369 -9.21167 -8.62464 -8.55273 -6.68273 -5.95819 -3.51321 2.78019 3.25699 3.32627 3.34514 3.50043 3.91809 4.28937 4.34291 4.43664 4.57517 4.83821 4.93729 5.11753 5.19202 5.22085 5.27902 5.31705 5.40796 5.53196 5.57338 5.69595 5.74050 5.81907 5.82686 5.98798 6.01541 6.03614 6.08966 6.16243 6.26035 6.39197 6.45944 6.48058 6.63719 6.65788 6.72391 6.92364 6.96331 7.22797 7.22970 7.40571 7.54533 7.70538 7.95259 8.38604 8.52496 9.09348 9.67483 10.27798 11.10461 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.004896 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.847831 B = 5718.024444 C = 6246.501079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.143 3.857 3 N -0.581 5.581 4 C -0.270 4.270 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.182 3.818 13 H 0.092 0.908 14 C -0.146 4.146 15 C 0.100 3.900 16 N -0.698 5.698 17 C 0.517 3.483 18 O -0.548 6.548 19 C -0.111 4.111 20 C 0.076 3.924 21 F -0.210 7.210 22 C -0.146 4.146 23 C 0.062 3.938 24 O -0.385 6.385 25 C 0.052 3.948 26 C -0.127 4.127 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.026 0.974 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.256 0.744 33 H 0.028 0.972 34 H 0.030 0.970 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.410 0.590 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.170 -5.908 -2.286 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 N -0.303 5.303 4 C -0.400 4.400 5 H 0.079 0.921 6 C -0.182 4.182 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.075 3.925 13 H 0.110 0.890 14 C -0.206 4.206 15 C -0.026 4.026 16 N -0.348 5.348 17 C 0.301 3.699 18 O -0.427 6.427 19 C -0.115 4.115 20 C 0.020 3.980 21 F -0.191 7.191 22 C -0.184 4.184 23 C -0.015 4.015 24 O -0.304 6.304 25 C -0.025 4.025 26 C -0.165 4.165 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.247 0.753 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.301 -5.992 -3.100 11.490 hybrid contribution -0.369 0.691 1.368 1.576 sum 8.932 -5.301 -1.732 10.530 Atomic orbital electron populations 1.22371 0.99712 0.98231 1.02174 1.20806 0.92016 0.87700 0.97807 1.43873 1.74067 1.09824 1.02517 1.18998 1.39392 0.92307 0.89275 0.92138 1.25305 0.96933 0.98954 0.96992 1.69933 1.39330 1.11739 1.31984 0.86493 0.78452 0.79430 0.83017 1.20835 1.21654 1.20815 1.20414 0.90628 0.96123 0.85348 0.88957 1.22161 1.00770 0.99694 0.97926 1.22178 0.87058 1.00779 0.92559 1.46025 1.16256 1.53497 1.19038 1.20061 0.83369 0.78778 0.87663 1.90615 1.81011 1.50279 1.20765 1.21502 0.95678 0.98331 0.95958 1.21955 0.86234 1.01807 0.87968 1.92755 1.57514 1.96848 1.71997 1.22312 1.02275 0.94190 0.99585 1.22570 0.92370 0.93786 0.92792 1.87880 1.36587 1.28081 1.77827 1.22806 1.00168 0.83796 0.95708 1.21990 0.97224 0.99058 0.98259 0.92866 0.93138 0.95507 0.94664 0.94698 0.93416 0.95289 0.95063 0.89650 0.92668 0.92732 0.75269 0.89385 0.90180 0.89682 0.89394 0.88497 0.93017 0.89235 0.90423 0.90252 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 10.01 37.16 0.37 -2.73 16 2 C 0.14 2.72 5.71 -4.04 -0.02 2.69 16 3 N -0.58 -12.14 1.80 -165.66 -0.30 -12.44 16 4 C -0.27 -6.30 9.35 -15.06 -0.14 -6.45 16 5 H 0.06 1.42 7.86 -52.49 -0.41 1.01 16 6 C 0.02 0.47 4.94 -17.43 -0.09 0.38 16 7 N -0.89 -22.56 10.32 55.49 0.57 -21.98 16 8 Si 0.90 19.58 29.57 -169.99 -5.03 14.55 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.18 3.64 1.91 -67.93 -0.13 3.51 16 13 H 0.09 2.11 6.40 -51.93 -0.33 1.77 16 14 C -0.15 -2.87 8.19 37.16 0.30 -2.57 16 15 C 0.10 1.76 4.88 -4.04 -0.02 1.74 16 16 N -0.70 -11.29 5.16 -60.29 -0.31 -11.60 16 17 C 0.52 8.05 5.15 -10.98 -0.06 8.00 16 18 O -0.55 -9.89 13.85 5.55 0.08 -9.81 16 19 C -0.11 -1.46 0.49 -155.48 -0.08 -1.53 16 20 C 0.08 0.93 6.28 37.16 0.23 1.17 16 21 F -0.21 -2.79 16.22 2.25 0.04 -2.75 16 22 C -0.15 -1.82 4.78 -26.49 -0.13 -1.95 16 23 C 0.06 0.80 6.62 37.31 0.25 1.05 16 24 O -0.38 -5.47 10.77 -35.23 -0.38 -5.85 16 25 C 0.05 0.68 6.55 37.20 0.24 0.93 16 26 C -0.13 -1.61 4.47 -26.60 -0.12 -1.73 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.98 5.99 -51.93 -0.31 0.66 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.03 0.63 6.42 -51.93 -0.33 0.30 16 32 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.03 0.57 6.50 -51.93 -0.34 0.24 16 35 H 0.08 1.94 6.96 -51.93 -0.36 1.57 16 36 H 0.06 1.00 6.79 -51.93 -0.35 0.65 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.41 6.75 6.83 -40.82 -0.28 6.47 16 39 H 0.09 1.08 7.57 -51.93 -0.39 0.69 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.05 7.51 -51.93 -0.39 0.66 16 42 H 0.09 1.07 7.73 -51.93 -0.40 0.67 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.73 7.38 -51.93 -0.38 0.35 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.08 1.18 5.81 -51.93 -0.30 0.88 16 47 H 0.08 0.96 7.73 -51.93 -0.40 0.55 16 48 H 0.08 1.00 8.02 -51.93 -0.42 0.58 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -25.91 367.21 -7.09 -33.01 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.92 Total: 8.83 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 0.62 Total: 2.51 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.04 Total: -46.03 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.30 Total: -15.66 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -25.91 -7.09 -33.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155237527.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.512 kcal (2) G-P(sol) polarization free energy of solvation -25.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds