Wall clock time and date at job start Tue Mar 31 2020 10:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47059 * 2 1 4 4 C 1.36939 * 119.99951 * 84.81836 * 3 2 1 5 5 H 1.07997 * 120.00029 * 38.40357 * 4 3 2 6 6 C 1.38816 * 119.99640 * 218.40615 * 4 3 2 7 7 N 1.31613 * 119.99994 * 12.34405 * 6 4 3 8 8 Si 1.86801 * 119.99648 * 192.34214 * 6 4 3 9 9 H 1.48496 * 109.47202 * 59.99855 * 8 6 4 10 10 H 1.48496 * 109.47043 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47018 * 300.00189 * 8 6 4 12 12 C 1.46501 * 120.00031 * 264.81940 * 3 2 1 13 13 H 1.08994 * 109.46884 * 182.21554 * 12 3 2 14 14 C 1.53004 * 109.47044 * 62.21054 * 12 3 2 15 15 C 1.53002 * 109.46749 * 302.21273 * 12 3 2 16 16 N 1.46496 * 109.47289 * 304.99832 * 15 12 3 17 17 C 1.34779 * 120.00008 * 180.02562 * 16 15 12 18 18 O 1.21283 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99881 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.54422 * 59.99827 * 19 17 16 21 21 F 1.39906 * 109.46886 * 180.02562 * 20 19 17 22 22 C 1.53181 * 109.54058 * 299.82017 * 19 17 16 23 23 C 1.53289 * 109.06185 * 297.02982 * 22 19 17 24 24 O 1.42898 * 109.46221 * 302.44535 * 23 22 19 25 25 C 1.42907 * 114.09477 * 61.15878 * 24 23 22 26 26 C 1.53089 * 109.41758 * 298.84208 * 25 24 23 27 27 H 1.09001 * 109.47382 * 299.99998 * 1 2 3 28 28 H 1.09000 * 109.47471 * 60.00185 * 1 2 3 29 29 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47471 * 119.99815 * 2 1 3 31 31 H 1.09001 * 109.47382 * 240.00002 * 2 1 3 32 32 H 0.97004 * 119.99481 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46905 * 179.97438 * 14 12 3 34 34 H 1.08993 * 109.47181 * 300.00143 * 14 12 3 35 35 H 1.09004 * 109.47023 * 60.00138 * 14 12 3 36 36 H 1.08999 * 109.47179 * 65.00367 * 15 12 3 37 37 H 1.08997 * 109.46913 * 184.99818 * 15 12 3 38 38 H 0.96999 * 120.00083 * 0.02562 * 16 15 12 39 39 H 1.09000 * 109.47225 * 299.99558 * 20 19 17 40 40 H 1.08994 * 109.47162 * 60.00200 * 20 19 17 41 41 H 1.08995 * 109.52591 * 57.02050 * 22 19 17 42 42 H 1.08998 * 109.52262 * 177.21546 * 22 19 17 43 43 H 1.08996 * 109.45722 * 182.44711 * 23 22 19 44 44 H 1.09003 * 109.46496 * 62.45257 * 23 22 19 45 45 H 1.09006 * 109.47807 * 178.85368 * 25 24 23 46 46 H 1.09005 * 109.48890 * 58.83674 * 25 24 23 47 47 H 1.09003 * 109.51998 * 297.70167 * 26 25 24 48 48 H 1.08997 * 109.57173 * 177.54953 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1455 2.0625 1.1811 5 1 2.4985 1.5508 2.0643 6 6 1.8208 3.4107 1.2431 7 7 1.1676 3.9766 0.2505 8 14 2.3109 4.4217 2.7355 9 1 3.7883 4.4013 2.8837 10 1 1.8511 5.8224 2.5571 11 1 1.6834 3.8451 3.9517 12 6 2.3705 2.0337 -1.2635 13 1 2.7478 3.0362 -1.0619 14 6 1.1293 2.1252 -2.1535 15 6 3.4498 1.2162 -1.9761 16 7 4.5918 1.0272 -1.0781 17 6 5.6689 0.3325 -1.4947 18 8 5.6926 -0.1366 -2.6129 19 6 6.8434 0.1377 -0.5707 20 6 6.3881 -0.6070 0.6858 21 9 7.4794 -0.7865 1.5427 22 6 7.4181 1.5021 -0.1778 23 6 7.9424 2.2053 -1.4349 24 8 8.9241 1.3815 -2.0669 25 6 8.4305 0.1112 -2.4969 26 6 7.9272 -0.6763 -1.2843 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 0.9404 4.9186 0.2940 33 1 1.3912 2.6110 -3.0935 34 1 0.7520 1.1227 -2.3551 35 1 0.3603 2.7076 -1.6459 36 1 3.0436 0.2445 -2.2567 37 1 3.7753 1.7461 -2.8712 38 1 4.5727 1.4021 -0.1837 39 1 5.6192 -0.0253 1.1944 40 1 5.9823 -1.5789 0.4052 41 1 6.6370 2.1077 0.2819 42 1 8.2360 1.3630 0.5292 43 1 8.3921 3.1585 -1.1569 44 1 7.1164 2.3806 -2.1243 45 1 9.2319 -0.4443 -2.9840 46 1 7.6109 0.2586 -3.2003 47 1 8.7553 -0.8594 -0.5996 48 1 7.5102 -1.6277 -1.6143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155237527.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:21 Heat of formation + Delta-G solvation = -141.546096 kcal Electronic energy + Delta-G solvation = -29458.441423 eV Core-core repulsion = 25462.333241 eV Total energy + Delta-G solvation = -3996.108182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.71467 -41.78984 -39.42140 -38.42780 -35.67223 -35.24672 -33.68986 -32.52009 -31.91878 -30.09524 -29.12806 -27.10322 -25.78139 -24.72231 -24.34553 -23.28169 -22.83811 -21.08052 -20.20685 -18.75926 -17.99276 -17.65109 -17.33597 -16.97469 -16.67581 -16.60560 -16.48456 -16.15668 -15.97997 -15.54723 -15.36154 -15.04999 -14.71336 -14.50989 -14.29841 -14.00621 -13.64991 -13.37894 -13.26944 -13.24530 -13.07545 -12.92861 -12.82910 -12.63663 -12.58722 -12.37269 -12.29225 -12.16993 -12.11658 -11.79594 -11.51969 -11.44988 -11.25943 -11.20426 -10.82318 -10.45603 -10.37584 -9.92708 -8.43377 -7.79578 -5.35532 1.51491 1.53875 1.55537 1.58503 2.23410 2.55661 2.90060 3.26809 3.37091 3.40430 3.46246 3.68224 3.79282 3.93271 4.09459 4.17622 4.25690 4.27445 4.39653 4.48332 4.49829 4.55429 4.58857 4.71459 4.75222 4.76270 4.80847 4.86975 4.90298 4.94495 4.98401 5.02301 5.04669 5.10583 5.16183 5.20059 5.37721 5.52751 5.61724 5.76328 5.78658 5.94811 6.18579 6.55279 6.64250 7.22751 7.29525 7.93871 8.48893 9.23829 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.004896 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.847831 B = 5718.024444 C = 6246.501079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 N -0.587 5.587 4 C -0.263 4.263 5 H 0.062 0.938 6 C -0.023 4.023 7 N -0.912 5.912 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.304 1.304 11 H -0.285 1.285 12 C 0.189 3.811 13 H 0.063 0.937 14 C -0.137 4.137 15 C 0.114 3.886 16 N -0.697 5.697 17 C 0.521 3.479 18 O -0.571 6.571 19 C -0.107 4.107 20 C 0.079 3.921 21 F -0.213 7.213 22 C -0.142 4.142 23 C 0.059 3.941 24 O -0.395 6.395 25 C 0.051 3.949 26 C -0.124 4.124 27 H 0.026 0.974 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.247 0.753 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.410 0.590 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.035 0.965 45 H 0.109 0.891 46 H 0.056 0.944 47 H 0.089 0.911 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.317 -7.140 -1.795 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 N -0.309 5.309 4 C -0.394 4.394 5 H 0.079 0.921 6 C -0.222 4.222 7 N -0.555 5.555 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.231 1.231 11 H -0.212 1.212 12 C 0.082 3.918 13 H 0.081 0.919 14 C -0.196 4.196 15 C -0.012 4.012 16 N -0.347 5.347 17 C 0.307 3.693 18 O -0.451 6.451 19 C -0.110 4.110 20 C 0.024 3.976 21 F -0.194 7.194 22 C -0.180 4.180 23 C -0.017 4.017 24 O -0.314 6.314 25 C -0.026 4.026 26 C -0.162 4.162 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.247 0.753 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.133 0.867 44 H 0.053 0.947 45 H 0.127 0.873 46 H 0.074 0.926 47 H 0.108 0.892 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.463 -7.244 -2.600 12.989 hybrid contribution -0.730 1.027 1.183 1.729 sum 9.733 -6.217 -1.416 11.635 Atomic orbital electron populations 1.22258 0.99453 0.99543 1.00344 1.20881 0.92127 0.86584 0.98716 1.43963 1.74389 1.10381 1.02168 1.19182 1.37881 0.92330 0.89995 0.92071 1.25810 0.97620 0.99992 0.98737 1.70076 1.40885 1.11206 1.33313 0.85692 0.78473 0.77507 0.80683 1.19843 1.23060 1.21159 1.20241 0.91264 0.95004 0.85274 0.91879 1.22011 0.99739 0.99794 0.98053 1.21867 0.86839 1.00094 0.92369 1.45969 1.16174 1.53784 1.18753 1.20406 0.83477 0.77807 0.87584 1.90614 1.81429 1.51140 1.21932 1.21485 0.94663 0.99059 0.95840 1.21952 0.86014 1.02282 0.87379 1.92752 1.57736 1.96870 1.72039 1.22305 1.02533 0.93730 0.99427 1.22652 0.91943 0.94589 0.92543 1.87871 1.37004 1.28524 1.77971 1.22838 1.00199 0.83837 0.95690 1.21985 0.97245 0.98860 0.98080 0.95436 0.94128 0.92604 0.94074 0.93339 0.94365 0.93956 0.94006 0.92843 0.92675 0.92752 0.75280 0.89256 0.89115 0.89517 0.88502 0.86726 0.94695 0.87307 0.92602 0.89221 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 10.01 71.98 0.72 -4.93 16 2 C 0.14 5.17 5.71 86.38 0.49 5.66 16 3 N -0.59 -24.10 1.80 -678.02 -1.22 -25.32 16 4 C -0.26 -12.14 9.35 84.03 0.79 -11.35 16 5 H 0.06 2.80 7.86 -2.91 -0.02 2.77 16 6 C -0.02 -1.13 4.94 84.86 0.42 -0.71 16 7 N -0.91 -47.07 10.32 21.65 0.22 -46.85 16 8 Si 0.95 40.24 29.57 68.60 2.03 42.27 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 12 C 0.19 7.50 1.91 44.99 0.09 7.59 16 13 H 0.06 2.91 6.40 -2.39 -0.02 2.90 16 14 C -0.14 -5.34 8.19 71.98 0.59 -4.75 16 15 C 0.11 3.91 4.88 86.38 0.42 4.33 16 16 N -0.70 -21.76 5.16 -463.06 -2.39 -24.15 16 17 C 0.52 15.56 5.15 87.66 0.45 16.01 16 18 O -0.57 -20.01 13.85 -3.04 -0.04 -20.06 16 19 C -0.11 -2.61 0.49 -52.81 -0.03 -2.63 16 20 C 0.08 1.76 6.28 71.98 0.45 2.22 16 21 F -0.21 -5.11 16.22 44.97 0.73 -4.38 16 22 C -0.14 -3.29 4.78 30.75 0.15 -3.15 16 23 C 0.06 1.47 6.62 72.08 0.48 1.94 16 24 O -0.39 -10.62 10.77 -148.98 -1.60 -12.23 16 25 C 0.05 1.27 6.55 72.01 0.47 1.74 16 26 C -0.12 -2.87 4.47 30.68 0.14 -2.74 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 1.52 5.99 -2.39 -0.01 1.51 16 29 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 31 H 0.05 1.64 6.42 -2.39 -0.02 1.62 16 32 H 0.25 12.80 8.31 -92.71 -0.77 12.03 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.51 6.50 -2.39 -0.02 1.49 16 35 H 0.05 2.45 6.96 -2.39 -0.02 2.43 16 36 H 0.05 1.91 6.79 -2.39 -0.02 1.89 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.41 13.02 6.83 -92.71 -0.63 12.38 16 39 H 0.09 2.00 7.57 -2.39 -0.02 1.98 16 40 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.09 1.99 7.51 -2.39 -0.02 1.97 16 42 H 0.10 2.11 7.73 -2.39 -0.02 2.09 16 43 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.03 0.97 7.38 -2.39 -0.02 0.96 16 45 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 46 H 0.06 1.66 5.81 -2.38 -0.01 1.65 16 47 H 0.09 1.92 7.73 -2.39 -0.02 1.90 16 48 H 0.08 1.89 8.02 -2.39 -0.02 1.87 16 Total: -1.00 -54.36 367.21 3.67 -50.69 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.32 Total: 30.77 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.63 Total: 9.24 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -3.39 Total: -96.32 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.65 Total: -32.28 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.73 Total: -4.38 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -54.36 3.67 -50.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155237527.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.856 kcal (2) G-P(sol) polarization free energy of solvation -54.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds