Wall clock time and date at job start Tue Mar 31 2020 11:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99529 * 2 1 4 4 H 1.48493 * 109.47415 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46856 * 239.99605 * 3 2 1 6 6 H 1.48505 * 109.47140 * 120.00161 * 3 2 1 7 7 C 1.40022 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00288 * 149.21659 * 7 2 1 9 9 C 1.41552 * 119.99664 * 329.22137 * 7 2 1 10 10 C 1.41190 * 120.99796 * 335.48905 * 9 7 2 11 11 C 1.36549 * 119.15026 * 180.02562 * 10 9 7 12 12 N 1.32103 * 121.26884 * 359.97438 * 11 10 9 13 13 C 1.32529 * 122.21457 * 0.02562 * 12 11 10 14 14 N 1.39082 * 119.65527 * 180.02562 * 13 12 11 15 15 C 1.46844 * 110.99820 * 235.78892 * 14 13 12 16 16 C 1.53038 * 109.52391 * 185.84203 * 15 14 13 17 17 C 1.53120 * 109.27308 * 300.82019 * 16 15 14 18 18 C 1.53123 * 109.16270 * 57.65691 * 17 16 15 19 19 H 1.08997 * 109.50146 * 62.28160 * 18 17 16 20 20 N 1.46905 * 109.53497 * 182.38473 * 18 17 16 21 21 C 1.47486 * 110.99611 * 285.55039 * 20 18 17 22 22 C 1.53516 * 87.92836 * 221.29755 * 21 20 18 23 23 C 1.52999 * 114.16694 * 139.67412 * 22 21 20 24 24 N 1.46896 * 109.47455 * 91.16020 * 23 22 21 25 25 C 1.47478 * 110.99568 * 189.58256 * 20 18 17 26 26 C 1.46845 * 110.99821 * 359.97438 * 14 13 12 27 27 C 1.38743 * 120.68605 * 359.71273 * 13 12 11 28 28 H 0.97000 * 120.00049 * 173.05595 * 1 2 3 29 29 H 1.08004 * 120.42086 * 0.02978 * 10 9 7 30 30 H 1.08002 * 119.36692 * 180.02562 * 11 10 9 31 31 H 1.09002 * 109.46099 * 305.85430 * 15 14 13 32 32 H 1.09000 * 109.46059 * 65.82306 * 15 14 13 33 33 H 1.09000 * 109.50439 * 180.88189 * 16 15 14 34 34 H 1.08991 * 109.50523 * 60.75571 * 16 15 14 35 35 H 1.08999 * 109.52464 * 297.74679 * 17 16 15 36 36 H 1.09003 * 109.57132 * 177.59172 * 17 16 15 37 37 H 1.09003 * 113.47697 * 336.06453 * 21 20 18 38 38 H 1.08998 * 113.47248 * 106.53451 * 21 20 18 39 39 H 1.08997 * 114.34212 * 272.36595 * 22 21 20 40 40 H 1.09001 * 109.46922 * 211.15982 * 23 22 21 41 41 H 1.09002 * 109.47452 * 331.15510 * 23 22 21 42 42 H 1.00899 * 110.99841 * 56.04242 * 24 23 22 43 43 H 1.00895 * 111.00475 * 180.02562 * 24 23 22 44 44 H 1.09002 * 113.47379 * 253.46857 * 25 20 18 45 45 H 1.08998 * 113.47920 * 23.93447 * 25 20 18 46 46 H 1.08994 * 109.46458 * 294.17589 * 26 14 13 47 47 H 1.08998 * 109.46306 * 54.15915 * 26 14 13 48 48 H 1.08007 * 120.66934 * 180.30676 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2763 2.7465 0.0006 5 1 3.0951 1.6965 -1.2124 6 1 3.0951 1.6966 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 2.9735 -1.2786 -0.4781 9 6 1.4494 -2.3518 0.6284 10 6 0.4987 -2.2189 1.6637 11 6 -0.0150 -3.3434 2.2434 12 7 0.3604 -4.5485 1.8536 13 6 1.2486 -4.7338 0.8875 14 7 1.6050 -6.0267 0.5191 15 6 3.0575 -6.2198 0.6153 16 6 3.4275 -7.5995 0.0663 17 6 2.6960 -8.6768 0.8719 18 6 1.1877 -8.4246 0.7950 19 1 0.8579 -8.5035 -0.2409 20 7 0.4809 -9.4201 1.6120 21 6 0.4684 -10.7366 0.9472 22 6 -0.9910 -10.8886 1.3986 23 6 -1.9096 -11.5154 0.3479 24 7 -1.9394 -12.9727 0.5301 25 6 -0.9747 -9.3536 1.3840 26 6 0.8831 -7.0209 1.3233 27 6 1.8217 -3.6515 0.2355 28 1 -0.4850 -0.8339 -0.1016 29 1 0.1817 -1.2403 1.9928 30 1 -0.7428 -3.2458 3.0354 31 1 3.5655 -5.4497 0.0347 32 1 3.3648 -6.1497 1.6588 33 1 4.5038 -7.7488 0.1523 34 1 3.1329 -7.6655 -0.9810 35 1 3.0196 -8.6366 1.9120 36 1 2.9226 -9.6593 0.4577 37 1 0.5843 -10.6777 -0.1350 38 1 1.1422 -11.4607 1.4052 39 1 -1.1114 -11.3242 2.3905 40 1 -2.9170 -11.1145 0.4605 41 1 -1.5348 -11.2813 -0.6486 42 1 -2.2221 -13.2141 1.4681 43 1 -2.5395 -13.4104 -0.1528 44 1 -1.5238 -8.9056 2.2121 45 1 -1.2438 -8.9257 0.4183 46 1 1.2010 -6.9470 2.3632 47 1 -0.1885 -6.8330 1.2568 48 1 2.5418 -3.8028 -0.5552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155378451.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:50 Heat of formation + Delta-G solvation = 42.873686 kcal Electronic energy + Delta-G solvation = -26508.199853 eV Core-core repulsion = 22983.150689 eV Total energy + Delta-G solvation = -3525.049164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80729 -40.84835 -38.94597 -36.39393 -35.54378 -34.20756 -32.73842 -31.96554 -30.29450 -28.56821 -27.61646 -27.11219 -25.31041 -24.87537 -23.63541 -22.69362 -22.13891 -20.92561 -20.57145 -19.93929 -17.92857 -17.23288 -16.95798 -16.59651 -16.37565 -16.14841 -15.98750 -15.91439 -15.67713 -15.57385 -15.21462 -14.93760 -14.69887 -14.39054 -14.04227 -13.95525 -13.79993 -13.64915 -13.47699 -13.17551 -12.87227 -12.68381 -12.38551 -12.12178 -12.06409 -11.98883 -11.86770 -11.81462 -11.62986 -11.33775 -11.20374 -11.04640 -10.66752 -10.22881 -10.04206 -9.90819 -9.55972 -9.38357 -8.87153 -6.71996 0.68995 0.85610 1.49805 1.63651 1.80153 2.27773 2.50201 2.65311 3.08264 3.26006 3.45185 3.63788 3.68678 3.82098 3.86570 3.94760 4.05947 4.14745 4.25674 4.29830 4.39719 4.42720 4.46570 4.54755 4.58069 4.63664 4.69067 4.71392 4.73990 4.76086 4.80315 4.86796 4.88956 4.93424 4.96199 5.01532 5.13394 5.27927 5.31265 5.35340 5.38993 5.49201 5.52152 5.78717 5.87654 6.04644 6.12531 6.22420 6.43030 6.61181 6.61563 6.76168 7.54415 7.86292 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.025087 B = 0.002667 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.863074 B =10497.295956 C =11162.338744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.012 3.988 3 Si 1.117 2.883 4 H -0.269 1.269 5 H -0.254 1.254 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.103 3.897 10 C -0.295 4.295 11 C 0.123 3.877 12 N -0.616 5.616 13 C 0.317 3.683 14 N -0.482 5.482 15 C 0.060 3.940 16 C -0.105 4.105 17 C -0.103 4.103 18 C 0.061 3.939 19 H 0.052 0.948 20 N -0.482 5.482 21 C 0.018 3.982 22 C -0.097 4.097 23 C 0.075 3.925 24 N -0.855 5.855 25 C 0.000 4.000 26 C 0.098 3.902 27 C -0.308 4.308 28 H 0.283 0.717 29 H 0.100 0.900 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.347 0.653 43 H 0.350 0.650 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.026 0.974 47 H 0.058 0.942 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 -18.958 -0.035 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.207 4.207 3 Si 0.933 3.067 4 H -0.193 1.193 5 H -0.178 1.178 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.097 0.903 9 C 0.095 3.905 10 C -0.318 4.318 11 C -0.029 4.029 12 N -0.338 5.338 13 C 0.090 3.910 14 N -0.200 5.200 15 C -0.066 4.066 16 C -0.143 4.143 17 C -0.141 4.141 18 C -0.049 4.049 19 H 0.069 0.931 20 N -0.204 5.204 21 C -0.110 4.110 22 C -0.116 4.116 23 C -0.056 4.056 24 N -0.386 5.386 25 C -0.130 4.130 26 C -0.030 4.030 27 C -0.334 4.334 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.165 0.835 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.045 0.955 47 H 0.077 0.923 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.809 -18.073 0.451 18.097 hybrid contribution -0.957 -0.236 -0.340 1.042 sum -0.148 -18.309 0.111 18.310 Atomic orbital electron populations 1.70538 1.09141 1.33263 1.28288 1.28573 0.95450 1.07575 0.89137 0.83028 0.74915 0.69453 0.79350 1.19300 1.17818 1.18795 1.20779 1.06513 0.95876 1.33972 0.90318 1.18051 0.89542 0.93029 0.89882 1.21636 1.08180 0.98549 1.03478 1.21828 0.96458 0.87489 0.97080 1.67397 1.21653 1.26064 1.18637 1.19575 0.92196 0.89509 0.89749 1.59165 1.08280 1.00113 1.52453 1.22286 0.84704 1.00082 0.99518 1.21588 1.01398 0.91142 1.00175 1.21526 0.92408 0.99444 1.00741 1.22193 0.96346 0.91078 0.95240 0.93051 1.68929 1.05685 1.02844 1.42956 1.23790 0.97409 0.91514 0.98301 1.22652 0.95105 0.93602 1.00291 1.21673 0.97369 0.88319 0.98233 1.58662 1.61798 1.08358 1.09757 1.23822 0.90779 0.97202 1.01189 1.21539 0.97870 0.89663 0.93901 1.21289 1.12584 0.91850 1.07646 0.90520 0.88233 0.83493 0.90639 0.95443 0.88222 0.90697 0.92027 0.89597 0.91028 0.89270 0.87775 0.94712 0.91266 0.83976 0.83658 0.90589 0.91652 0.95546 0.92344 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.91 12.37 21.84 0.27 -41.64 16 2 C 0.01 0.62 4.84 85.29 0.41 1.03 16 3 Si 1.12 41.66 30.03 68.60 2.06 43.72 16 4 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.25 -8.63 7.11 99.48 0.71 -7.93 16 6 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.54 -29.03 8.99 23.52 0.21 -28.82 16 8 H 0.08 4.10 8.00 -2.91 -0.02 4.07 16 9 C 0.10 5.63 5.29 -21.11 -0.11 5.52 16 10 C -0.29 -15.54 8.20 22.60 0.19 -15.35 16 11 C 0.12 5.98 11.10 84.26 0.94 6.92 16 12 N -0.62 -30.27 8.65 -194.47 -1.68 -31.95 16 13 C 0.32 15.24 6.40 132.90 0.85 16.09 16 14 N -0.48 -19.11 4.68 -702.19 -3.29 -22.40 16 15 C 0.06 2.01 5.25 86.33 0.45 2.46 16 16 C -0.10 -2.52 6.09 30.65 0.19 -2.34 16 17 C -0.10 -2.43 5.37 30.68 0.16 -2.26 16 18 C 0.06 1.66 1.69 44.97 0.08 1.74 16 19 H 0.05 1.44 7.56 -2.39 -0.02 1.42 16 20 N -0.48 -11.81 6.13 -902.03 -5.53 -17.34 16 21 C 0.02 0.35 6.64 83.58 0.56 0.90 16 22 C -0.10 -1.66 4.24 -10.45 -0.04 -1.70 16 23 C 0.08 1.07 6.69 86.30 0.58 1.65 16 24 N -0.85 -10.18 9.62 -186.72 -1.80 -11.98 16 25 C 0.00 -0.01 6.39 83.58 0.53 0.53 16 26 C 0.10 3.54 3.97 86.33 0.34 3.88 16 27 C -0.31 -15.87 8.98 23.01 0.21 -15.66 16 28 H 0.28 15.81 7.19 -92.71 -0.67 15.14 16 29 H 0.10 5.33 6.77 -2.91 -0.02 5.31 16 30 H 0.15 6.19 8.06 -2.91 -0.02 6.16 16 31 H 0.08 2.62 6.69 -2.39 -0.02 2.60 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.64 7.75 -2.39 -0.02 1.62 16 37 H 0.07 1.32 7.43 -2.39 -0.02 1.30 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.10 1.72 8.13 -2.39 -0.02 1.70 16 40 H 0.03 0.47 8.14 -2.39 -0.02 0.46 16 41 H 0.07 1.05 7.81 -2.39 -0.02 1.03 16 42 H 0.35 3.37 8.98 -89.69 -0.81 2.56 16 43 H 0.35 3.11 9.08 -89.70 -0.81 2.30 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 1.53 7.74 -2.39 -0.02 1.51 16 46 H 0.03 1.05 8.11 -2.39 -0.02 1.04 16 47 H 0.06 2.33 7.10 -2.39 -0.02 2.31 16 48 H 0.10 5.17 7.16 -2.91 -0.02 5.15 16 Total: -1.00 -62.52 373.52 -4.98 -67.50 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: -0.55 Total: 39.50 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 5.54 Total: -25.42 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -12.03 Total: -125.30 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.06 Total: 43.72 kcal Total: -62.52 -4.98 -67.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155378451.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.375 kcal (2) G-P(sol) polarization free energy of solvation -62.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds