Wall clock time and date at job start Tue Mar 31 2020 12:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46853 * 110.99756 * 2 1 4 4 C 1.53062 * 109.51166 * 174.12271 * 3 2 1 5 5 C 1.53019 * 109.27296 * 59.06237 * 4 3 2 6 6 C 1.53035 * 109.31572 * 302.45105 * 5 4 3 7 7 C 1.46842 * 111.00410 * 235.73879 * 2 1 3 8 8 C 1.53039 * 109.53485 * 62.44586 * 5 4 3 9 9 C 1.53057 * 109.27105 * 177.65167 * 8 5 4 10 10 N 1.46846 * 109.50250 * 300.92029 * 9 8 5 11 11 C 1.38821 * 110.99658 * 185.88530 * 10 9 8 12 12 C 1.39968 * 119.97423 * 299.01960 * 11 10 9 13 13 N 1.32124 * 120.31726 * 179.97438 * 12 11 10 14 14 C 1.31932 * 120.27272 * 359.71000 * 13 12 11 15 15 C 1.40677 * 119.93376 * 0.56589 * 14 13 12 16 16 C 1.41273 * 120.15496 * 179.71034 * 15 14 13 17 17 H 1.07993 * 120.00388 * 351.39513 * 16 15 14 18 18 C 1.40057 * 119.99724 * 171.39446 * 16 15 14 19 19 N 1.30731 * 120.00085 * 183.17137 * 18 16 15 20 20 Si 1.86802 * 120.00098 * 3.16688 * 18 16 15 21 21 H 1.48508 * 109.46827 * 186.39907 * 20 18 16 22 22 H 1.48499 * 109.47020 * 306.39937 * 20 18 16 23 23 H 1.48501 * 109.47049 * 66.40071 * 20 18 16 24 24 N 1.32245 * 119.96740 * 118.99731 * 11 10 9 25 25 C 1.46845 * 111.23671 * 61.76383 * 10 9 8 26 26 C 1.53011 * 109.59662 * 182.37434 * 5 4 3 27 27 H 1.08994 * 109.46943 * 60.00391 * 1 2 3 28 28 H 1.09001 * 109.46455 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47034 * 299.99861 * 1 2 3 30 30 H 1.08999 * 109.46833 * 54.10337 * 3 2 1 31 31 H 1.09003 * 109.45786 * 294.12794 * 3 2 1 32 32 H 1.08992 * 109.50121 * 299.11980 * 4 3 2 33 33 H 1.09002 * 109.53306 * 179.02020 * 4 3 2 34 34 H 1.09003 * 109.50812 * 177.49833 * 6 5 4 35 35 H 1.09002 * 109.49987 * 297.61845 * 6 5 4 36 36 H 1.09004 * 109.46183 * 305.89490 * 7 2 1 37 37 H 1.09003 * 109.46706 * 65.86706 * 7 2 1 38 38 H 1.09000 * 109.50770 * 57.70895 * 8 5 4 39 39 H 1.09007 * 109.50256 * 297.58912 * 8 5 4 40 40 H 1.08990 * 109.46837 * 180.90923 * 9 8 5 41 41 H 1.09002 * 109.46251 * 60.92593 * 9 8 5 42 42 H 1.07995 * 119.83952 * 359.97438 * 12 11 10 43 43 H 1.08006 * 120.03339 * 180.29491 * 14 13 12 44 44 H 0.97002 * 119.99389 * 353.18696 * 19 18 16 45 45 H 1.09000 * 109.46464 * 58.26394 * 25 10 9 46 46 H 1.08999 * 109.46336 * 178.23456 * 25 10 9 47 47 H 1.09004 * 109.50714 * 302.34813 * 26 5 4 48 48 H 1.09002 * 109.50374 * 62.42136 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5182 1.3340 0.1477 5 6 4.1188 0.5345 -1.0105 6 6 3.5182 -0.8730 -1.0191 7 6 1.9953 -0.7717 -1.1330 8 6 3.8010 1.2339 -2.3341 9 6 4.4537 0.4615 -3.4831 10 7 5.9059 0.4044 -3.2727 11 6 6.5438 -0.1741 -4.3615 12 6 6.2434 -1.4907 -4.7296 13 7 6.8461 -2.0478 -5.7650 14 6 7.7326 -1.3657 -6.4647 15 6 8.0472 -0.0437 -6.1010 16 6 9.0001 0.6889 -6.8432 17 1 9.5892 0.1953 -7.6019 18 6 9.1809 2.0554 -6.5952 19 7 10.0178 2.7469 -7.3236 20 14 8.2260 2.8901 -5.2237 21 1 8.4762 4.3533 -5.2658 22 1 6.7748 2.6306 -5.4020 23 1 8.6681 2.3499 -3.9130 24 7 7.4345 0.5194 -5.0504 25 6 6.2359 -0.3063 -2.0308 26 6 5.6364 0.4426 -0.8382 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5629 1.9261 0.8325 31 1 1.7331 1.8605 -0.9380 32 1 3.7807 0.8587 1.0928 33 1 3.9109 2.3507 0.1303 34 1 3.9105 -1.4310 -1.8693 35 1 3.7806 -1.3862 -0.0939 36 1 1.5630 -1.7723 -1.1230 37 1 1.7333 -0.2723 -2.0657 38 1 4.1916 2.2512 -2.3112 39 1 2.7212 1.2613 -2.4812 40 1 4.2428 0.9660 -4.4259 41 1 4.0512 -0.5510 -3.5149 42 1 5.5155 -2.0538 -4.1645 43 1 8.2194 -1.8233 -7.3133 44 1 10.5856 2.2970 -7.9686 45 1 5.8253 -1.3153 -2.0697 46 1 7.3189 -0.3591 -1.9194 47 1 6.0586 1.4463 -0.7893 48 1 5.8663 -0.0941 0.0822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156574618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:17 Heat of formation + Delta-G solvation = 36.556606 kcal Electronic energy + Delta-G solvation = -27790.105444 eV Core-core repulsion = 24264.782351 eV Total energy + Delta-G solvation = -3525.323093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80156 -39.46838 -37.43951 -34.70228 -34.15833 -32.45369 -31.11440 -30.87916 -30.35536 -28.51049 -25.95326 -25.57522 -23.76932 -23.24136 -22.84570 -22.43872 -21.33245 -20.19084 -18.68562 -17.88866 -16.71268 -16.29359 -15.91073 -15.53964 -15.40356 -14.83890 -14.75158 -14.41637 -14.34374 -13.92290 -13.80527 -13.30812 -13.16473 -13.06225 -12.60728 -12.57125 -12.47041 -12.16436 -11.92869 -11.75263 -11.60182 -11.51645 -11.31003 -11.15736 -11.10245 -11.04720 -11.00389 -10.21001 -10.12514 -10.06316 -9.87297 -9.65770 -9.35215 -9.24108 -8.48520 -8.46798 -8.07257 -7.63780 -7.05305 -5.01285 2.09243 2.54753 3.60028 3.67182 3.74090 3.90773 4.08033 4.40498 4.49560 4.57227 4.59344 4.66910 4.94385 5.04377 5.11107 5.15034 5.24690 5.32053 5.33496 5.36950 5.42740 5.46879 5.49539 5.54661 5.59513 5.60646 5.67688 5.73666 5.78080 5.81979 5.92766 5.95480 5.99362 6.03043 6.07731 6.13434 6.19660 6.29362 6.35859 6.40069 6.49333 6.67504 6.87746 6.89782 7.10266 7.23492 7.33769 7.54020 7.83591 8.08025 8.34420 8.83786 9.28491 9.80493 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.003842 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.579826 B = 7285.448387 C = 7983.697944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.054 3.946 4 C -0.104 4.104 5 C -0.058 4.058 6 C -0.109 4.109 7 C 0.054 3.946 8 C -0.107 4.107 9 C 0.070 3.930 10 N -0.495 5.495 11 C 0.315 3.685 12 C -0.144 4.144 13 N -0.413 5.413 14 C -0.054 4.054 15 C 0.206 3.794 16 C -0.446 4.446 17 H 0.090 0.910 18 C 0.041 3.959 19 N -0.789 5.789 20 Si 1.154 2.846 21 H -0.333 1.333 22 H -0.280 1.280 23 H -0.284 1.284 24 N -0.522 5.522 25 C 0.069 3.931 26 C -0.103 4.103 27 H 0.023 0.977 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.127 0.873 43 H 0.139 0.861 44 H 0.286 0.714 45 H 0.040 0.960 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.345 -2.318 13.857 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.074 4.074 4 C -0.141 4.141 5 C -0.058 4.058 6 C -0.147 4.147 7 C -0.073 4.073 8 C -0.145 4.145 9 C -0.058 4.058 10 N -0.219 5.219 11 C 0.077 3.923 12 C -0.304 4.304 13 N -0.124 5.124 14 C -0.225 4.225 15 C 0.081 3.919 16 C -0.478 4.478 17 H 0.108 0.892 18 C -0.182 4.182 19 N -0.410 5.410 20 Si 0.989 3.011 21 H -0.266 1.266 22 H -0.208 1.208 23 H -0.211 1.211 24 N -0.245 5.245 25 C -0.058 4.058 26 C -0.141 4.141 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.145 0.855 43 H 0.157 0.843 44 H 0.098 0.902 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.218 -0.646 14.905 20.609 hybrid contribution -0.095 -2.042 -1.821 2.738 sum -14.313 -2.688 13.084 19.577 Atomic orbital electron populations 1.22342 0.87638 1.01903 1.00467 1.61930 1.07207 1.13955 1.43675 1.22133 0.95895 0.88940 1.00396 1.21608 0.93779 1.00238 0.98506 1.20556 0.95215 0.95122 0.94910 1.21729 0.93791 0.96658 1.02523 1.22136 0.95895 0.97844 0.91460 1.21741 0.99399 1.00027 0.93322 1.22035 0.85737 0.99158 0.98826 1.58406 1.08111 1.54492 1.00875 1.20050 0.92041 0.89493 0.90722 1.22766 1.09485 0.95438 1.02713 1.67584 1.04616 1.36533 1.03707 1.23055 1.02288 0.94199 1.02975 1.19392 0.91771 0.91555 0.89176 1.20861 1.15361 0.96172 1.15427 0.89207 1.27971 0.95817 0.95091 0.99348 1.70649 1.14690 1.40225 1.15399 0.81792 0.76154 0.69870 0.73304 1.26616 1.20814 1.21142 1.66974 1.12847 1.35309 1.09404 1.22044 1.00735 0.94928 0.88093 1.21626 0.93862 1.01674 0.96912 0.95819 0.91529 0.91528 0.91098 0.94553 0.91137 0.91271 0.91077 0.91140 0.91084 0.94509 0.90809 0.91647 0.90951 0.94186 0.85548 0.84328 0.90246 0.94154 0.90809 0.90780 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.59 60.07 0.58 0.77 16 2 N -0.54 -5.21 4.91 -242.93 -1.19 -6.40 16 3 C 0.05 0.50 5.22 -3.82 -0.02 0.48 16 4 C -0.10 -0.99 4.89 -26.69 -0.13 -1.12 16 5 C -0.06 -0.63 0.51 -154.46 -0.08 -0.71 16 6 C -0.11 -1.15 4.29 -26.69 -0.11 -1.27 16 7 C 0.05 0.54 5.22 -3.83 -0.02 0.52 16 8 C -0.11 -1.33 4.29 -26.68 -0.11 -1.45 16 9 C 0.07 1.09 4.88 -3.82 -0.02 1.07 16 10 N -0.50 -9.22 4.70 -173.05 -0.81 -10.03 16 11 C 0.31 7.03 5.68 -155.01 -0.88 6.15 16 12 C -0.14 -3.14 9.87 -16.78 -0.17 -3.30 16 13 N -0.41 -9.69 10.47 -12.11 -0.13 -9.82 16 14 C -0.05 -1.30 10.97 -16.59 -0.18 -1.48 16 15 C 0.21 5.31 6.40 -84.84 -0.54 4.77 16 16 C -0.45 -11.72 9.59 -37.75 -0.36 -12.08 16 17 H 0.09 2.29 8.05 -52.49 -0.42 1.87 16 18 C 0.04 1.08 5.52 -17.34 -0.10 0.99 16 19 N -0.79 -20.85 13.65 55.55 0.76 -20.09 16 20 Si 1.15 28.66 25.55 -169.99 -4.34 24.32 16 21 H -0.33 -8.17 7.11 56.52 0.40 -7.77 16 22 H -0.28 -7.11 6.68 56.52 0.38 -6.73 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 24 N -0.52 -13.28 4.73 -10.14 -0.05 -13.33 16 25 C 0.07 1.07 4.90 -3.83 -0.02 1.05 16 26 C -0.10 -1.26 4.89 -26.70 -0.13 -1.39 16 27 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 31 H 0.04 0.35 6.58 -51.93 -0.34 0.01 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.82 4.95 -51.93 -0.26 0.56 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.04 0.38 6.47 -51.93 -0.34 0.05 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.74 4.95 -51.92 -0.26 0.48 16 40 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.04 0.59 5.68 -51.93 -0.30 0.30 16 42 H 0.13 2.43 7.11 -52.49 -0.37 2.06 16 43 H 0.14 3.04 8.06 -52.48 -0.42 2.62 16 44 H 0.29 7.13 8.73 -40.82 -0.36 6.77 16 45 H 0.04 0.59 5.92 -51.93 -0.31 0.28 16 46 H 0.07 1.25 8.10 -51.93 -0.42 0.82 16 47 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -28.76 353.73 -10.41 -39.17 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.67 Total: -2.14 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.30 Total: -7.01 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -1.42 Total: -59.67 kcal Atomic # 14 Polarization: 28.66 SS G_CDS: -4.34 Total: 24.32 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.76 -10.41 -39.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156574618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.726 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds