Wall clock time and date at job start Tue Mar 31 2020 12:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46853 * 110.99756 * 2 1 4 4 C 1.53062 * 109.51166 * 174.12271 * 3 2 1 5 5 C 1.53019 * 109.27296 * 59.06237 * 4 3 2 6 6 C 1.53035 * 109.31572 * 302.45105 * 5 4 3 7 7 C 1.46842 * 111.00410 * 235.73879 * 2 1 3 8 8 C 1.53039 * 109.53485 * 62.44586 * 5 4 3 9 9 C 1.53057 * 109.27105 * 177.65167 * 8 5 4 10 10 N 1.46846 * 109.50250 * 300.92029 * 9 8 5 11 11 C 1.38821 * 110.99658 * 185.88530 * 10 9 8 12 12 C 1.39968 * 119.97423 * 299.01960 * 11 10 9 13 13 N 1.32124 * 120.31726 * 179.97438 * 12 11 10 14 14 C 1.31932 * 120.27272 * 359.71000 * 13 12 11 15 15 C 1.40677 * 119.93376 * 0.56589 * 14 13 12 16 16 C 1.41273 * 120.15496 * 179.71034 * 15 14 13 17 17 H 1.07993 * 120.00388 * 351.39513 * 16 15 14 18 18 C 1.40057 * 119.99724 * 171.39446 * 16 15 14 19 19 N 1.30731 * 120.00085 * 183.17137 * 18 16 15 20 20 Si 1.86802 * 120.00098 * 3.16688 * 18 16 15 21 21 H 1.48508 * 109.46827 * 186.39907 * 20 18 16 22 22 H 1.48499 * 109.47020 * 306.39937 * 20 18 16 23 23 H 1.48501 * 109.47049 * 66.40071 * 20 18 16 24 24 N 1.32245 * 119.96740 * 118.99731 * 11 10 9 25 25 C 1.46845 * 111.23671 * 61.76383 * 10 9 8 26 26 C 1.53011 * 109.59662 * 182.37434 * 5 4 3 27 27 H 1.08994 * 109.46943 * 60.00391 * 1 2 3 28 28 H 1.09001 * 109.46455 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47034 * 299.99861 * 1 2 3 30 30 H 1.08999 * 109.46833 * 54.10337 * 3 2 1 31 31 H 1.09003 * 109.45786 * 294.12794 * 3 2 1 32 32 H 1.08992 * 109.50121 * 299.11980 * 4 3 2 33 33 H 1.09002 * 109.53306 * 179.02020 * 4 3 2 34 34 H 1.09003 * 109.50812 * 177.49833 * 6 5 4 35 35 H 1.09002 * 109.49987 * 297.61845 * 6 5 4 36 36 H 1.09004 * 109.46183 * 305.89490 * 7 2 1 37 37 H 1.09003 * 109.46706 * 65.86706 * 7 2 1 38 38 H 1.09000 * 109.50770 * 57.70895 * 8 5 4 39 39 H 1.09007 * 109.50256 * 297.58912 * 8 5 4 40 40 H 1.08990 * 109.46837 * 180.90923 * 9 8 5 41 41 H 1.09002 * 109.46251 * 60.92593 * 9 8 5 42 42 H 1.07995 * 119.83952 * 359.97438 * 12 11 10 43 43 H 1.08006 * 120.03339 * 180.29491 * 14 13 12 44 44 H 0.97002 * 119.99389 * 353.18696 * 19 18 16 45 45 H 1.09000 * 109.46464 * 58.26394 * 25 10 9 46 46 H 1.08999 * 109.46336 * 178.23456 * 25 10 9 47 47 H 1.09004 * 109.50714 * 302.34813 * 26 5 4 48 48 H 1.09002 * 109.50374 * 62.42136 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5182 1.3340 0.1477 5 6 4.1188 0.5345 -1.0105 6 6 3.5182 -0.8730 -1.0191 7 6 1.9953 -0.7717 -1.1330 8 6 3.8010 1.2339 -2.3341 9 6 4.4537 0.4615 -3.4831 10 7 5.9059 0.4044 -3.2727 11 6 6.5438 -0.1741 -4.3615 12 6 6.2434 -1.4907 -4.7296 13 7 6.8461 -2.0478 -5.7650 14 6 7.7326 -1.3657 -6.4647 15 6 8.0472 -0.0437 -6.1010 16 6 9.0001 0.6889 -6.8432 17 1 9.5892 0.1953 -7.6019 18 6 9.1809 2.0554 -6.5952 19 7 10.0178 2.7469 -7.3236 20 14 8.2260 2.8901 -5.2237 21 1 8.4762 4.3533 -5.2658 22 1 6.7748 2.6306 -5.4020 23 1 8.6681 2.3499 -3.9130 24 7 7.4345 0.5194 -5.0504 25 6 6.2359 -0.3063 -2.0308 26 6 5.6364 0.4426 -0.8382 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5629 1.9261 0.8325 31 1 1.7331 1.8605 -0.9380 32 1 3.7807 0.8587 1.0928 33 1 3.9109 2.3507 0.1303 34 1 3.9105 -1.4310 -1.8693 35 1 3.7806 -1.3862 -0.0939 36 1 1.5630 -1.7723 -1.1230 37 1 1.7333 -0.2723 -2.0657 38 1 4.1916 2.2512 -2.3112 39 1 2.7212 1.2613 -2.4812 40 1 4.2428 0.9660 -4.4259 41 1 4.0512 -0.5510 -3.5149 42 1 5.5155 -2.0538 -4.1645 43 1 8.2194 -1.8233 -7.3133 44 1 10.5856 2.2970 -7.9686 45 1 5.8253 -1.3153 -2.0697 46 1 7.3189 -0.3591 -1.9194 47 1 6.0586 1.4463 -0.7893 48 1 5.8663 -0.0941 0.0822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156574618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:16 Heat of formation + Delta-G solvation = 18.468998 kcal Electronic energy + Delta-G solvation = -27790.889782 eV Core-core repulsion = 24264.782351 eV Total energy + Delta-G solvation = -3526.107431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04638 -40.97633 -38.60858 -36.26367 -35.67928 -34.31013 -32.08665 -32.01489 -31.65740 -29.72966 -27.76857 -26.57545 -24.70915 -24.44129 -24.33770 -23.71366 -22.68657 -21.36395 -20.58479 -18.91957 -18.27162 -17.91749 -17.50981 -16.70869 -16.42599 -15.89956 -15.82934 -15.55314 -15.40607 -15.34988 -15.17338 -14.79695 -14.64143 -14.56383 -14.20199 -13.53550 -13.48753 -13.29429 -13.13012 -13.07033 -13.00288 -12.88104 -12.53391 -12.31770 -12.25575 -12.10664 -11.97369 -11.86802 -11.59832 -11.37854 -11.17576 -11.09423 -11.02947 -10.96683 -10.13973 -9.93308 -9.56966 -9.17705 -8.83654 -6.99994 0.23762 0.62274 1.59131 1.66890 1.98534 2.37271 2.51764 2.59353 3.06167 3.35284 3.67411 3.68603 3.73842 3.80382 4.00790 4.05617 4.19859 4.23893 4.29139 4.32238 4.35143 4.39515 4.48054 4.51229 4.54611 4.63750 4.66851 4.70372 4.75153 4.78565 4.79736 4.89692 4.94835 4.98747 5.05605 5.09738 5.13818 5.18368 5.25006 5.26017 5.29285 5.31373 5.47243 5.51515 5.76637 5.88055 6.03066 6.18738 6.20537 6.25394 6.40532 6.96894 7.39694 7.81302 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.003842 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.579826 B = 7285.448387 C = 7983.697944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.551 5.551 3 C 0.055 3.945 4 C -0.098 4.098 5 C -0.052 4.052 6 C -0.105 4.105 7 C 0.056 3.944 8 C -0.098 4.098 9 C 0.071 3.929 10 N -0.512 5.512 11 C 0.312 3.688 12 C -0.127 4.127 13 N -0.419 5.419 14 C -0.065 4.065 15 C 0.196 3.804 16 C -0.473 4.473 17 H 0.087 0.913 18 C 0.021 3.979 19 N -0.809 5.809 20 Si 1.189 2.811 21 H -0.330 1.330 22 H -0.292 1.292 23 H -0.293 1.293 24 N -0.546 5.546 25 C 0.069 3.931 26 C -0.096 4.096 27 H 0.022 0.978 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.159 0.841 43 H 0.154 0.846 44 H 0.289 0.711 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.506 -3.154 16.100 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.275 5.275 3 C -0.073 4.073 4 C -0.136 4.136 5 C -0.052 4.052 6 C -0.142 4.142 7 C -0.072 4.072 8 C -0.136 4.136 9 C -0.056 4.056 10 N -0.237 5.237 11 C 0.075 3.925 12 C -0.288 4.288 13 N -0.130 5.130 14 C -0.234 4.234 15 C 0.070 3.930 16 C -0.506 4.506 17 H 0.105 0.895 18 C -0.199 4.199 19 N -0.431 5.431 20 Si 1.024 2.976 21 H -0.264 1.264 22 H -0.221 1.221 23 H -0.222 1.222 24 N -0.270 5.270 25 C -0.058 4.058 26 C -0.134 4.134 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.176 0.824 43 H 0.172 0.828 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.379 -1.489 17.142 23.756 hybrid contribution 0.418 -1.924 -2.394 3.100 sum -15.961 -3.413 14.748 21.998 Atomic orbital electron populations 1.22387 0.86634 1.02466 1.00892 1.61953 1.08194 1.14028 1.43368 1.22144 0.95537 0.88950 1.00679 1.21555 0.94048 1.00172 0.97808 1.20509 0.94378 0.95712 0.94615 1.21668 0.94263 0.95940 1.02337 1.22105 0.95391 0.98291 0.91390 1.21688 0.99833 0.99108 0.92946 1.22105 0.84120 1.00116 0.99244 1.58521 1.09547 1.54965 1.00627 1.20478 0.91146 0.89680 0.91153 1.23331 1.08466 0.95355 1.01605 1.67669 1.04626 1.36583 1.04170 1.23240 1.02704 0.93753 1.03697 1.19555 0.91777 0.92308 0.89340 1.20851 1.16734 0.96439 1.16587 0.89535 1.28364 0.96090 0.95598 0.99877 1.70636 1.15687 1.40377 1.16382 0.81265 0.74849 0.69491 0.72027 1.26365 1.22068 1.22157 1.66913 1.13892 1.36404 1.09834 1.22145 0.99957 0.95900 0.87756 1.21606 0.94509 1.01021 0.96218 0.95894 0.90960 0.90597 0.89941 0.95008 0.90608 0.90921 0.91991 0.90627 0.90437 0.95112 0.91741 0.90138 0.93162 0.92943 0.82407 0.82829 0.89953 0.92883 0.92733 0.91638 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.59 127.69 1.22 1.54 16 2 N -0.55 -8.83 4.91 -922.51 -4.53 -13.35 16 3 C 0.05 0.83 5.22 86.33 0.45 1.28 16 4 C -0.10 -1.57 4.89 30.62 0.15 -1.42 16 5 C -0.05 -0.99 0.51 -52.15 -0.03 -1.02 16 6 C -0.10 -1.87 4.29 30.62 0.13 -1.74 16 7 C 0.06 0.94 5.22 86.33 0.45 1.39 16 8 C -0.10 -2.24 4.29 30.63 0.13 -2.11 16 9 C 0.07 2.09 4.88 86.33 0.42 2.51 16 10 N -0.51 -18.45 4.70 -701.40 -3.29 -21.74 16 11 C 0.31 13.67 5.68 133.38 0.76 14.43 16 12 C -0.13 -5.26 9.87 85.07 0.84 -4.42 16 13 N -0.42 -19.00 10.47 -192.23 -2.01 -21.02 16 14 C -0.07 -3.11 10.97 85.27 0.94 -2.18 16 15 C 0.20 10.19 6.40 40.15 0.26 10.45 16 16 C -0.47 -25.42 9.59 23.46 0.23 -25.19 16 17 H 0.09 4.56 8.05 -2.91 -0.02 4.53 16 18 C 0.02 1.13 5.52 85.30 0.47 1.60 16 19 N -0.81 -43.49 13.65 21.84 0.30 -43.19 16 20 Si 1.19 59.46 25.55 68.60 1.75 61.21 16 21 H -0.33 -16.10 7.11 99.48 0.71 -15.40 16 22 H -0.29 -14.96 6.68 99.48 0.66 -14.30 16 23 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 24 N -0.55 -27.83 4.73 -186.00 -0.88 -28.71 16 25 C 0.07 2.00 4.90 86.33 0.42 2.42 16 26 C -0.10 -2.11 4.89 30.62 0.15 -1.96 16 27 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.07 0.84 8.09 -2.39 -0.02 0.83 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 31 H 0.03 0.52 6.58 -2.39 -0.02 0.50 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.22 4.95 -2.39 -0.01 1.21 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.20 8.08 -2.38 -0.02 1.19 16 37 H 0.03 0.55 6.47 -2.39 -0.02 0.54 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.62 4.95 -2.38 -0.01 1.61 16 40 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 41 H 0.05 1.42 5.68 -2.39 -0.01 1.40 16 42 H 0.16 5.52 7.11 -2.91 -0.02 5.50 16 43 H 0.15 6.70 8.06 -2.91 -0.02 6.68 16 44 H 0.29 14.75 8.73 -92.71 -0.81 13.94 16 45 H 0.05 1.40 5.92 -2.39 -0.01 1.39 16 46 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 47 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -61.06 353.73 -0.81 -61.86 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.87 Total: 9.35 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 6.99 Total: -4.42 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -10.42 Total: -128.01 kcal Atomic # 14 Polarization: 59.46 SS G_CDS: 1.75 Total: 61.21 kcal Total: -61.06 -0.81 -61.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156574618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.332 kcal (2) G-P(sol) polarization free energy of solvation -61.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds