Wall clock time and date at job start Tue Mar 31 2020 11:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31754 * 119.04394 * 2 1 4 4 C 1.33165 * 120.87902 * 179.97438 * 3 2 1 5 5 N 1.38636 * 120.48427 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99922 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.41180 * 324.85475 * 6 5 4 8 8 C 1.52961 * 109.41510 * 84.64582 * 6 5 4 9 9 C 1.53225 * 109.40387 * 183.70423 * 8 6 5 10 10 C 1.51270 * 108.54026 * 305.37372 * 9 8 6 11 11 C 1.37877 * 120.84926 * 231.33146 * 10 9 8 12 12 N 1.31512 * 120.00012 * 180.02562 * 11 10 9 13 13 Si 1.86792 * 120.00086 * 0.02562 * 11 10 9 14 14 H 1.48504 * 109.47281 * 90.00256 * 13 11 10 15 15 H 1.48503 * 109.47280 * 210.00078 * 13 11 10 16 16 H 1.48505 * 109.47358 * 330.00302 * 13 11 10 17 17 C 1.51271 * 118.29858 * 51.34631 * 10 9 8 18 18 C 1.52960 * 109.41512 * 205.00184 * 6 5 4 19 19 C 1.39167 * 119.02972 * 359.97438 * 4 3 2 20 20 C 1.39124 * 118.27092 * 359.97438 * 19 4 3 21 21 N 1.38630 * 120.48893 * 179.97438 * 20 19 4 22 22 C 1.48535 * 110.99802 * 62.60974 * 21 20 19 23 23 C 1.54931 * 103.23014 * 159.72338 * 22 21 20 24 24 C 1.54603 * 102.91765 * 322.58462 * 23 22 21 25 25 C 1.47896 * 111.00041 * 180.02562 * 21 20 19 26 26 N 1.31728 * 119.04513 * 179.72783 * 2 1 3 27 27 H 1.09002 * 109.47152 * 90.00123 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00224 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00204 * 1 2 3 30 30 H 0.97003 * 119.99784 * 0.02562 * 5 4 3 31 31 H 1.09003 * 109.47903 * 303.68738 * 8 6 5 32 32 H 1.09005 * 109.47803 * 63.72489 * 8 6 5 33 33 H 1.08997 * 109.62403 * 185.65845 * 9 8 6 34 34 H 1.08997 * 109.78208 * 65.18214 * 9 8 6 35 35 H 0.96997 * 120.00674 * 179.97438 * 12 11 10 36 36 H 1.08998 * 109.62230 * 188.93942 * 17 10 9 37 37 H 1.08997 * 109.78373 * 68.46693 * 17 10 9 38 38 H 1.09003 * 109.47867 * 296.27355 * 18 6 5 39 39 H 1.08999 * 109.47870 * 56.29983 * 18 6 5 40 40 H 1.08004 * 120.86324 * 180.02562 * 19 4 3 41 41 H 1.09004 * 110.66650 * 278.16085 * 22 21 20 42 42 H 1.09003 * 110.66580 * 41.28222 * 22 21 20 43 43 H 1.08998 * 110.72590 * 204.22947 * 23 22 21 44 44 H 1.09000 * 110.88194 * 81.01095 * 23 22 21 45 45 H 1.09004 * 110.30423 * 263.03847 * 24 23 22 46 46 H 1.08996 * 110.39061 * 140.92159 * 24 23 22 47 47 H 1.08998 * 109.91990 * 333.50881 * 25 21 20 48 48 H 1.08998 * 109.92263 * 94.61050 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1467 1.1519 0.0000 4 6 3.4776 1.1945 0.0005 5 7 4.1423 2.4111 0.0000 6 6 5.6069 2.4456 0.0011 7 1 5.9884 1.6143 0.5940 8 6 6.1195 2.3218 -1.4347 9 6 7.6507 2.2648 -1.4254 10 6 8.1724 3.4729 -0.6793 11 6 9.1329 4.2888 -1.2386 12 7 9.5750 5.3345 -0.5749 13 14 9.8061 3.9090 -2.9391 14 1 8.9802 4.5972 -3.9636 15 1 11.2096 4.3848 -3.0335 16 1 9.7636 2.4429 -3.1723 17 6 7.6138 3.7626 0.6963 18 6 6.0839 3.7652 0.6100 19 6 4.1916 -0.0001 0.0016 20 6 3.4779 -1.1943 0.0026 21 7 4.1425 -2.4109 0.0032 22 6 4.9579 -2.5713 1.2343 23 6 5.1738 -4.1032 1.3195 24 6 3.8210 -4.6705 0.8313 25 6 3.1849 -3.5380 0.0037 26 7 2.1466 -1.1516 0.0055 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 3.6376 3.2395 -0.0004 31 1 5.7245 1.4108 -1.8844 32 1 5.7913 3.1851 -2.0136 33 1 8.0237 2.2778 -2.4495 34 1 7.9830 1.3546 -0.9263 35 1 10.2509 5.9084 -0.9682 36 1 7.9631 4.7378 1.0353 37 1 7.9397 2.9934 1.3963 38 1 5.7566 4.5944 -0.0173 39 1 5.6635 3.8774 1.6094 40 1 5.2716 -0.0001 0.0024 41 1 5.9118 -2.0534 1.1341 42 1 4.4129 -2.2105 2.1065 43 1 5.3718 -4.4083 2.3470 44 1 5.9840 -4.4185 0.6621 45 1 3.1866 -4.9203 1.6818 46 1 3.9808 -5.5504 0.2082 47 1 2.2454 -3.2269 0.4606 48 1 3.0072 -3.8748 -1.0176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157049537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:15 Heat of formation + Delta-G solvation = 46.828628 kcal Electronic energy + Delta-G solvation = -26939.621518 eV Core-core repulsion = 23414.743853 eV Total energy + Delta-G solvation = -3524.877665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06547 -38.93750 -37.75345 -34.92612 -33.73645 -32.39885 -30.82682 -30.25764 -29.73895 -29.28888 -27.87140 -27.08765 -23.60544 -22.89928 -21.70467 -21.50268 -21.07182 -20.61642 -19.54832 -17.81363 -17.44315 -16.25063 -16.01890 -15.49391 -15.10039 -15.01759 -14.57627 -14.48657 -14.03967 -13.73230 -13.45724 -13.40916 -12.98965 -12.77264 -12.69443 -12.46747 -12.29331 -12.26995 -12.13426 -11.78740 -11.56479 -11.37676 -11.28103 -11.03288 -10.82884 -10.76829 -10.68832 -10.54482 -10.14079 -10.02603 -9.90214 -9.56686 -9.10800 -8.99508 -8.79730 -8.53924 -8.48969 -7.70941 -6.17505 -4.09120 1.27505 1.63025 3.21913 3.29303 3.32491 3.33988 3.55314 4.05146 4.17899 4.32870 4.40899 4.56531 4.75590 4.82759 5.10166 5.12380 5.19564 5.29534 5.46198 5.49801 5.53213 5.54656 5.57552 5.61440 5.68456 5.72087 5.75327 5.78068 5.83254 5.94132 6.02271 6.03196 6.30474 6.37730 6.43595 6.47181 6.61654 6.71071 6.76065 6.88599 6.99397 7.08640 7.22055 7.32171 7.55141 7.61443 7.61882 7.75073 7.93577 8.29102 8.54578 8.88405 9.47253 10.91910 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.003576 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.624087 B = 7828.331380 C = 8929.446085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.373 3.627 3 N -0.599 5.599 4 C 0.457 3.543 5 N -0.700 5.700 6 C 0.160 3.840 7 H 0.073 0.927 8 C -0.119 4.119 9 C -0.012 4.012 10 C -0.492 4.492 11 C 0.078 3.922 12 N -0.888 5.888 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.266 1.266 17 C 0.014 3.986 18 C -0.114 4.114 19 C -0.305 4.305 20 C 0.369 3.631 21 N -0.460 5.460 22 C 0.046 3.954 23 C -0.123 4.123 24 C -0.132 4.132 25 C 0.036 3.964 26 N -0.601 5.601 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.403 0.597 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.018 0.982 35 H 0.265 0.735 36 H 0.062 0.938 37 H 0.006 0.994 38 H 0.057 0.943 39 H 0.037 0.963 40 H 0.144 0.856 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.129 -14.849 3.584 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.102 3.898 3 N -0.326 5.326 4 C 0.214 3.786 5 N -0.329 5.329 6 C 0.057 3.943 7 H 0.091 0.909 8 C -0.158 4.158 9 C -0.050 4.050 10 C -0.511 4.511 11 C -0.125 4.125 12 N -0.526 5.526 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.191 1.191 17 C -0.023 4.023 18 C -0.152 4.152 19 C -0.336 4.336 20 C 0.133 3.867 21 N -0.178 5.178 22 C -0.080 4.080 23 C -0.162 4.162 24 C -0.171 4.171 25 C -0.091 4.091 26 N -0.328 5.328 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.238 0.762 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.162 0.838 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.325 -14.723 3.133 20.103 hybrid contribution 0.731 0.362 -0.570 0.995 sum -12.594 -14.360 2.563 19.272 Atomic orbital electron populations 1.20488 0.86334 1.03546 1.03467 1.22566 0.97062 0.82379 0.87779 1.67784 1.07850 1.30780 1.26207 1.18395 0.87653 0.87044 0.85545 1.45187 1.07238 1.04165 1.76265 1.21190 0.75278 1.00086 0.97777 0.90923 1.22033 0.99344 0.99597 0.94869 1.19710 0.90814 0.97378 0.97139 1.20009 1.21151 1.08622 1.01299 1.24836 0.95740 0.94458 0.97491 1.69822 1.29605 1.15174 1.37952 0.86667 0.78175 0.78935 0.84649 1.20395 1.21573 1.19130 1.19329 0.88208 0.99069 0.95736 1.21933 1.01130 0.94556 0.97593 1.21533 1.02208 0.90890 1.18956 1.19726 0.88023 0.90478 0.88428 1.61736 1.20226 1.00126 1.35687 1.23309 0.98140 0.97442 0.89071 1.22514 0.97998 0.93777 1.01872 1.22457 0.96505 0.98358 0.99753 1.22873 0.95712 0.88974 1.01499 1.68036 1.08505 1.30433 1.25794 0.89983 0.89960 0.90099 0.76205 0.94487 0.92606 0.94944 0.96316 0.92488 0.91983 0.97577 0.92473 0.94418 0.83825 0.88801 0.92731 0.90487 0.90242 0.91313 0.90819 0.89885 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.32 36.01 0.37 -0.46 16 2 C 0.37 5.56 7.64 -157.28 -1.20 4.35 16 3 N -0.60 -9.87 10.36 -10.03 -0.10 -9.98 16 4 C 0.46 7.78 7.68 -154.71 -1.19 6.59 16 5 N -0.70 -11.65 5.23 -53.88 -0.28 -11.93 16 6 C 0.16 2.92 2.05 -67.97 -0.14 2.78 16 7 H 0.07 1.34 6.51 -51.93 -0.34 1.00 16 8 C -0.12 -2.37 5.45 -26.63 -0.15 -2.51 16 9 C -0.01 -0.27 5.59 -27.49 -0.15 -0.43 16 10 C -0.49 -12.38 5.51 -98.92 -0.55 -12.93 16 11 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 12 N -0.89 -24.82 12.73 55.43 0.71 -24.11 16 13 Si 0.89 20.69 27.27 -169.99 -4.64 16.06 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.27 -6.04 6.46 56.52 0.37 -5.68 16 17 C 0.01 0.34 5.97 -27.49 -0.16 0.18 16 18 C -0.11 -2.24 5.40 -26.63 -0.14 -2.38 16 19 C -0.30 -5.05 8.28 -38.91 -0.32 -5.37 16 20 C 0.37 5.74 6.21 -154.70 -0.96 4.78 16 21 N -0.46 -6.18 5.30 -169.12 -0.90 -7.07 16 22 C 0.05 0.52 6.08 -1.90 -0.01 0.50 16 23 C -0.12 -1.06 7.06 -24.87 -0.18 -1.24 16 24 C -0.13 -1.12 6.93 -25.35 -0.18 -1.30 16 25 C 0.04 0.41 6.37 -2.74 -0.02 0.39 16 26 N -0.60 -9.16 8.19 -10.03 -0.08 -9.24 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.40 6.30 8.72 -40.82 -0.36 5.94 16 31 H 0.04 0.70 7.76 -51.93 -0.40 0.30 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.03 0.73 4.78 -51.93 -0.25 0.48 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 37 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.14 2.40 6.32 -52.48 -0.33 2.07 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.63 7.99 -51.93 -0.42 0.21 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 1.01 6.52 -51.93 -0.34 0.67 16 48 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -28.44 369.75 -12.68 -41.12 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.89 Total: 4.65 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -5.07 Total: -5.07 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.66 Total: -62.33 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.64 Total: 16.06 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.44 -12.68 -41.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.948 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds