Wall clock time and date at job start Tue Mar 31 2020 11:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31754 * 119.04394 * 2 1 4 4 C 1.33165 * 120.87902 * 179.97438 * 3 2 1 5 5 N 1.38636 * 120.48427 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99922 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.41180 * 324.85475 * 6 5 4 8 8 C 1.52961 * 109.41510 * 84.64582 * 6 5 4 9 9 C 1.53225 * 109.40387 * 183.70423 * 8 6 5 10 10 C 1.51270 * 108.54026 * 305.37372 * 9 8 6 11 11 C 1.37877 * 120.84926 * 231.33146 * 10 9 8 12 12 N 1.31512 * 120.00012 * 180.02562 * 11 10 9 13 13 Si 1.86792 * 120.00086 * 0.02562 * 11 10 9 14 14 H 1.48504 * 109.47281 * 90.00256 * 13 11 10 15 15 H 1.48503 * 109.47280 * 210.00078 * 13 11 10 16 16 H 1.48505 * 109.47358 * 330.00302 * 13 11 10 17 17 C 1.51271 * 118.29858 * 51.34631 * 10 9 8 18 18 C 1.52960 * 109.41512 * 205.00184 * 6 5 4 19 19 C 1.39167 * 119.02972 * 359.97438 * 4 3 2 20 20 C 1.39124 * 118.27092 * 359.97438 * 19 4 3 21 21 N 1.38630 * 120.48893 * 179.97438 * 20 19 4 22 22 C 1.48535 * 110.99802 * 62.60974 * 21 20 19 23 23 C 1.54931 * 103.23014 * 159.72338 * 22 21 20 24 24 C 1.54603 * 102.91765 * 322.58462 * 23 22 21 25 25 C 1.47896 * 111.00041 * 180.02562 * 21 20 19 26 26 N 1.31728 * 119.04513 * 179.72783 * 2 1 3 27 27 H 1.09002 * 109.47152 * 90.00123 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00224 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00204 * 1 2 3 30 30 H 0.97003 * 119.99784 * 0.02562 * 5 4 3 31 31 H 1.09003 * 109.47903 * 303.68738 * 8 6 5 32 32 H 1.09005 * 109.47803 * 63.72489 * 8 6 5 33 33 H 1.08997 * 109.62403 * 185.65845 * 9 8 6 34 34 H 1.08997 * 109.78208 * 65.18214 * 9 8 6 35 35 H 0.96997 * 120.00674 * 179.97438 * 12 11 10 36 36 H 1.08998 * 109.62230 * 188.93942 * 17 10 9 37 37 H 1.08997 * 109.78373 * 68.46693 * 17 10 9 38 38 H 1.09003 * 109.47867 * 296.27355 * 18 6 5 39 39 H 1.08999 * 109.47870 * 56.29983 * 18 6 5 40 40 H 1.08004 * 120.86324 * 180.02562 * 19 4 3 41 41 H 1.09004 * 110.66650 * 278.16085 * 22 21 20 42 42 H 1.09003 * 110.66580 * 41.28222 * 22 21 20 43 43 H 1.08998 * 110.72590 * 204.22947 * 23 22 21 44 44 H 1.09000 * 110.88194 * 81.01095 * 23 22 21 45 45 H 1.09004 * 110.30423 * 263.03847 * 24 23 22 46 46 H 1.08996 * 110.39061 * 140.92159 * 24 23 22 47 47 H 1.08998 * 109.91990 * 333.50881 * 25 21 20 48 48 H 1.08998 * 109.92263 * 94.61050 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1467 1.1519 0.0000 4 6 3.4776 1.1945 0.0005 5 7 4.1423 2.4111 0.0000 6 6 5.6069 2.4456 0.0011 7 1 5.9884 1.6143 0.5940 8 6 6.1195 2.3218 -1.4347 9 6 7.6507 2.2648 -1.4254 10 6 8.1724 3.4729 -0.6793 11 6 9.1329 4.2888 -1.2386 12 7 9.5750 5.3345 -0.5749 13 14 9.8061 3.9090 -2.9391 14 1 8.9802 4.5972 -3.9636 15 1 11.2096 4.3848 -3.0335 16 1 9.7636 2.4429 -3.1723 17 6 7.6138 3.7626 0.6963 18 6 6.0839 3.7652 0.6100 19 6 4.1916 -0.0001 0.0016 20 6 3.4779 -1.1943 0.0026 21 7 4.1425 -2.4109 0.0032 22 6 4.9579 -2.5713 1.2343 23 6 5.1738 -4.1032 1.3195 24 6 3.8210 -4.6705 0.8313 25 6 3.1849 -3.5380 0.0037 26 7 2.1466 -1.1516 0.0055 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 3.6376 3.2395 -0.0004 31 1 5.7245 1.4108 -1.8844 32 1 5.7913 3.1851 -2.0136 33 1 8.0237 2.2778 -2.4495 34 1 7.9830 1.3546 -0.9263 35 1 10.2509 5.9084 -0.9682 36 1 7.9631 4.7378 1.0353 37 1 7.9397 2.9934 1.3963 38 1 5.7566 4.5944 -0.0173 39 1 5.6635 3.8774 1.6094 40 1 5.2716 -0.0001 0.0024 41 1 5.9118 -2.0534 1.1341 42 1 4.4129 -2.2105 2.1065 43 1 5.3718 -4.4083 2.3470 44 1 5.9840 -4.4185 0.6621 45 1 3.1866 -4.9203 1.6818 46 1 3.9808 -5.5504 0.2082 47 1 2.2454 -3.2269 0.4606 48 1 3.0072 -3.8748 -1.0176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:15 Heat of formation + Delta-G solvation = 31.867107 kcal Electronic energy + Delta-G solvation = -26940.270299 eV Core-core repulsion = 23414.743853 eV Total energy + Delta-G solvation = -3525.526445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.21443 -39.99230 -39.21109 -36.44468 -34.76570 -34.05999 -32.32094 -31.50510 -31.14419 -30.18473 -28.90056 -28.76996 -24.76408 -24.31463 -23.36288 -22.82516 -22.08736 -21.67820 -21.09823 -19.11958 -18.51689 -17.94817 -17.00321 -16.75613 -16.44240 -16.24944 -16.21187 -15.85121 -15.18623 -14.93595 -14.72464 -14.59938 -14.32767 -14.25457 -14.00332 -13.71820 -13.62184 -13.34481 -13.27784 -13.07774 -12.83418 -12.75516 -12.56358 -12.31239 -12.17184 -12.11265 -12.00272 -11.87920 -11.51306 -11.47848 -11.40577 -11.02168 -10.85936 -10.58915 -10.54919 -10.21974 -9.59560 -9.02700 -8.18484 -6.12410 0.09915 0.40389 1.37147 1.41710 1.49151 1.99243 2.39814 2.49453 2.87759 3.10534 3.18571 3.52834 3.67699 3.83417 3.94054 3.97449 4.12530 4.15760 4.30392 4.33657 4.43665 4.51015 4.56737 4.62556 4.67341 4.77492 4.80249 4.84162 4.85994 4.90415 4.92934 4.97700 5.03281 5.03868 5.11375 5.13291 5.19648 5.22087 5.25790 5.40781 5.52500 5.54669 5.61088 5.73287 5.79327 5.81211 6.07503 6.31987 6.36101 6.66200 6.93959 7.34722 7.46020 8.92207 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.003576 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.624087 B = 7828.331380 C = 8929.446085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.363 3.637 3 N -0.611 5.611 4 C 0.447 3.553 5 N -0.698 5.698 6 C 0.176 3.824 7 H 0.074 0.926 8 C -0.110 4.110 9 C -0.013 4.013 10 C -0.498 4.498 11 C 0.026 3.974 12 N -0.929 5.929 13 Si 0.936 3.064 14 H -0.277 1.277 15 H -0.292 1.292 16 H -0.254 1.254 17 C 0.012 3.988 18 C -0.102 4.102 19 C -0.322 4.322 20 C 0.368 3.632 21 N -0.471 5.471 22 C 0.042 3.958 23 C -0.117 4.117 24 C -0.125 4.125 25 C 0.035 3.965 26 N -0.603 5.603 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.407 0.593 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.030 0.970 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.031 0.969 37 H 0.006 0.994 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.138 0.862 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.725 -17.224 3.452 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.093 3.907 3 N -0.339 5.339 4 C 0.204 3.796 5 N -0.327 5.327 6 C 0.072 3.928 7 H 0.092 0.908 8 C -0.149 4.149 9 C -0.052 4.052 10 C -0.518 4.518 11 C -0.173 4.173 12 N -0.568 5.568 13 Si 0.763 3.237 14 H -0.202 1.202 15 H -0.219 1.219 16 H -0.179 1.179 17 C -0.026 4.026 18 C -0.140 4.140 19 C -0.353 4.353 20 C 0.132 3.868 21 N -0.189 5.189 22 C -0.083 4.083 23 C -0.155 4.155 24 C -0.163 4.163 25 C -0.092 4.092 26 N -0.330 5.330 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.244 0.756 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.024 0.976 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.156 0.844 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.949 -17.133 2.999 22.935 hybrid contribution 1.165 1.011 -0.482 1.616 sum -13.784 -16.123 2.518 21.360 Atomic orbital electron populations 1.20628 0.83270 1.04801 1.04692 1.23469 0.98890 0.81873 0.86430 1.67853 1.07520 1.31624 1.26947 1.18512 0.88175 0.86989 0.85889 1.44878 1.06318 1.04549 1.76948 1.20817 0.76387 0.99022 0.96566 0.90841 1.21888 0.97441 0.99688 0.95923 1.19714 0.92539 0.96294 0.96608 1.20595 1.20302 1.08965 1.01909 1.25540 0.96519 0.94686 1.00531 1.69949 1.30821 1.16556 1.39516 0.85876 0.77337 0.79301 0.81205 1.20232 1.21873 1.17875 1.19276 0.90935 0.97270 0.95167 1.21703 0.98296 0.95235 0.98783 1.21533 1.01972 0.91337 1.20415 1.19993 0.88303 0.91083 0.87456 1.61747 1.20699 0.99943 1.36547 1.23393 0.97407 0.99528 0.87940 1.22530 0.98185 0.91497 1.03249 1.22450 0.96243 0.97643 0.99981 1.22940 0.95191 0.89191 1.01872 1.68185 1.08315 1.30529 1.25929 0.88576 0.89016 0.88503 0.75632 0.93490 0.93411 0.95152 0.95673 0.92779 0.95031 0.97582 0.93197 0.92524 0.84406 0.89287 0.93209 0.88478 0.89952 0.90034 0.89305 0.90813 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.32 71.24 0.73 -0.65 16 2 C 0.36 10.22 7.64 138.78 1.06 11.28 16 3 N -0.61 -19.37 10.36 -185.65 -1.92 -21.29 16 4 C 0.45 14.77 7.68 132.97 1.02 15.79 16 5 N -0.70 -22.48 5.23 -324.38 -1.70 -24.18 16 6 C 0.18 6.27 2.05 44.97 0.09 6.37 16 7 H 0.07 2.64 6.51 -2.38 -0.02 2.63 16 8 C -0.11 -4.26 5.45 30.66 0.17 -4.09 16 9 C -0.01 -0.59 5.59 30.10 0.17 -0.42 16 10 C -0.50 -25.21 5.51 -16.17 -0.09 -25.30 16 11 C 0.03 1.38 5.46 84.65 0.46 1.85 16 12 N -0.93 -53.33 12.73 21.45 0.27 -53.06 16 13 Si 0.94 42.62 27.27 68.60 1.87 44.49 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.25 -10.97 6.46 99.48 0.64 -10.33 16 17 C 0.01 0.55 5.97 30.11 0.18 0.73 16 18 C -0.10 -3.96 5.40 30.66 0.17 -3.80 16 19 C -0.32 -10.40 8.28 22.71 0.19 -10.21 16 20 C 0.37 11.07 6.21 132.95 0.83 11.90 16 21 N -0.47 -12.06 5.30 -688.99 -3.65 -15.71 16 22 C 0.04 0.89 6.08 86.65 0.53 1.42 16 23 C -0.12 -1.71 7.06 31.80 0.22 -1.48 16 24 C -0.13 -1.77 6.93 31.49 0.22 -1.55 16 25 C 0.03 0.72 6.37 86.46 0.55 1.27 16 26 N -0.60 -17.51 8.19 -185.66 -1.52 -19.03 16 27 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.41 12.30 8.72 -92.71 -0.81 11.49 16 31 H 0.05 1.72 7.76 -2.39 -0.02 1.71 16 32 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.03 1.33 4.78 -2.39 -0.01 1.32 16 34 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.26 14.45 8.31 -92.71 -0.77 13.67 16 36 H 0.03 1.68 7.07 -2.39 -0.02 1.66 16 37 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.14 4.53 6.32 -2.91 -0.02 4.51 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.05 1.09 7.99 -2.39 -0.02 1.07 16 43 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 1.67 6.52 -2.39 -0.02 1.66 16 48 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -61.29 369.75 -0.06 -61.35 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.09 Total: 24.32 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 6.50 Total: 3.11 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -8.52 Total: -133.27 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.87 Total: 44.49 kcal Total: -61.29 -0.06 -61.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.221 kcal (2) G-P(sol) polarization free energy of solvation -61.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds