Wall clock time and date at job start Tue Mar 31 2020 11:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38132 * 120.35258 * 2 1 4 4 C 1.39640 * 118.48932 * 180.02562 * 3 2 1 5 5 N 1.38532 * 120.48505 * 180.02562 * 4 3 2 6 6 C 1.48531 * 111.00159 * 62.58518 * 5 4 3 7 7 C 1.54935 * 103.22854 * 159.71856 * 6 5 4 8 8 C 1.54593 * 102.92183 * 322.58163 * 7 6 5 9 9 C 1.47906 * 110.99783 * 179.97438 * 5 4 3 10 10 N 1.32934 * 119.03161 * 0.02562 * 4 3 2 11 11 C 1.32449 * 120.60871 * 359.97438 * 10 4 3 12 12 N 1.38396 * 119.17332 * 180.02562 * 11 10 4 13 13 C 1.46497 * 119.99831 * 180.02562 * 12 11 10 14 14 H 1.09011 * 109.41215 * 324.99307 * 13 12 11 15 15 C 1.52958 * 109.41681 * 84.84963 * 13 12 11 16 16 C 1.53234 * 109.39963 * 183.77359 * 15 13 12 17 17 C 1.51271 * 108.48608 * 305.26843 * 16 15 13 18 18 C 1.37870 * 120.85365 * 231.36446 * 17 16 15 19 19 N 1.31519 * 120.00401 * 180.02562 * 18 17 16 20 20 Si 1.86799 * 119.99846 * 0.02644 * 18 17 16 21 21 H 1.48500 * 109.47602 * 90.00123 * 20 18 17 22 22 H 1.48511 * 109.47129 * 209.99868 * 20 18 17 23 23 H 1.48502 * 109.47208 * 329.99378 * 20 18 17 24 24 C 1.51271 * 118.29693 * 51.39020 * 17 16 15 25 25 C 1.52956 * 109.41473 * 205.13883 * 13 12 11 26 26 N 1.32480 * 120.35738 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46991 * 89.99680 * 1 2 3 28 28 H 1.08996 * 109.47283 * 209.99974 * 1 2 3 29 29 H 1.09004 * 109.46973 * 329.99971 * 1 2 3 30 30 H 1.07995 * 120.75931 * 0.02562 * 3 2 1 31 31 H 1.09001 * 110.66295 * 278.15385 * 6 5 4 32 32 H 1.09005 * 110.66782 * 41.28101 * 6 5 4 33 33 H 1.08997 * 110.72407 * 204.22425 * 7 6 5 34 34 H 1.09002 * 110.72162 * 80.94485 * 7 6 5 35 35 H 1.08996 * 110.30975 * 263.04128 * 8 7 6 36 36 H 1.08999 * 110.30735 * 140.87320 * 8 7 6 37 37 H 1.09001 * 109.92202 * 333.51200 * 9 5 4 38 38 H 1.09006 * 109.91646 * 94.80239 * 9 5 4 39 39 H 0.96997 * 120.00016 * 359.97438 * 12 11 10 40 40 H 1.08995 * 109.48651 * 303.68937 * 15 13 12 41 41 H 1.09003 * 109.47884 * 63.73088 * 15 13 12 42 42 H 1.09004 * 109.62030 * 185.59158 * 16 15 13 43 43 H 1.09001 * 109.84895 * 65.08307 * 16 15 13 44 44 H 0.96996 * 120.00216 * 180.02562 * 19 18 17 45 45 H 1.09005 * 109.62478 * 188.93222 * 24 17 16 46 46 H 1.09003 * 109.62769 * 68.36633 * 24 17 16 47 47 H 1.08999 * 109.47924 * 296.27383 * 25 13 12 48 48 H 1.09004 * 109.48126 * 56.31256 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2050 1.1920 0.0000 4 6 3.6007 1.1466 -0.0005 5 7 4.3419 2.3169 0.0000 6 6 4.0878 3.1074 1.2315 7 6 5.3231 4.0388 1.3161 8 6 6.4747 3.1309 0.8269 9 6 5.7920 2.0258 -0.0002 10 7 4.2076 -0.0361 -0.0016 11 6 3.5014 -1.1566 -0.0016 12 7 4.1640 -2.3716 -0.0021 13 6 3.4008 -3.6221 -0.0026 14 1 2.4932 -3.4929 0.5872 15 6 3.0253 -3.9880 -1.4396 16 6 2.1476 -5.2441 -1.4322 17 6 2.8791 -6.3359 -0.6831 18 6 3.0475 -7.5854 -1.2410 19 7 3.6858 -8.5226 -0.5746 20 14 2.3691 -7.9473 -2.9433 21 1 3.3978 -7.6257 -3.9649 22 1 2.0103 -9.3853 -3.0379 23 1 1.1597 -7.1189 -3.1807 24 6 3.4205 -6.0219 0.6940 25 6 4.2506 -4.7367 0.6097 26 7 2.1765 -1.1432 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6833 2.1375 0.0004 31 1 3.1723 3.6906 1.1322 32 1 4.0371 2.4554 2.1036 33 1 5.4946 4.3595 2.3436 34 1 5.2034 4.8990 0.6574 35 1 7.0013 2.6968 1.6767 36 1 7.1650 3.6987 0.2029 37 1 5.9757 1.0533 0.4565 38 1 6.1730 2.0373 -1.0214 39 1 5.1337 -2.3953 -0.0029 40 1 2.4748 -3.1636 -1.8927 41 1 3.9314 -4.1798 -2.0144 42 1 1.9600 -5.5655 -2.4567 43 1 1.2007 -5.0310 -0.9362 44 1 3.8046 -9.4015 -0.9672 45 1 4.0507 -6.8431 1.0357 46 1 2.5930 -5.8783 1.3888 47 1 5.1270 -4.9103 -0.0147 48 1 4.5690 -4.4433 1.6100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157049907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:18 Heat of formation + Delta-G solvation = 51.515646 kcal Electronic energy + Delta-G solvation = -26724.151243 eV Core-core repulsion = 23199.476823 eV Total energy + Delta-G solvation = -3524.674421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08435 -39.02152 -37.42817 -34.70345 -34.16230 -32.44010 -31.01903 -30.00582 -29.56290 -29.37314 -27.96016 -26.84708 -23.53804 -22.89000 -21.77730 -21.48872 -21.05935 -20.69488 -19.33040 -17.53241 -17.45495 -16.33125 -16.02279 -15.74230 -15.21994 -14.99838 -14.59556 -14.42166 -14.15245 -13.61117 -13.34353 -13.31617 -13.01462 -12.86419 -12.65693 -12.54160 -12.25449 -12.13514 -12.04125 -11.67749 -11.66333 -11.48736 -11.08069 -10.90299 -10.88079 -10.76068 -10.63407 -10.40003 -10.11390 -10.03440 -9.90146 -9.50385 -8.97560 -8.88027 -8.80954 -8.58357 -8.46098 -7.60417 -6.09883 -4.00255 1.35396 1.46975 3.14520 3.28526 3.36813 3.39380 3.56832 4.08342 4.20927 4.34000 4.39569 4.49553 4.65526 4.99797 5.02997 5.04706 5.15470 5.19637 5.35836 5.41968 5.46444 5.49818 5.56480 5.59465 5.67006 5.72334 5.77034 5.79456 5.91752 5.94457 5.98635 6.24461 6.27894 6.31706 6.51117 6.64705 6.75473 6.85077 6.92693 7.00556 7.07414 7.12772 7.33024 7.45185 7.53820 7.67402 7.73665 7.77529 7.92648 8.38765 8.71733 8.96991 9.55480 10.99748 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.003004 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.903316 B = 9317.149563 C = 9954.689295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.229 3.771 3 C -0.310 4.310 4 C 0.385 3.615 5 N -0.461 5.461 6 C 0.047 3.953 7 C -0.124 4.124 8 C -0.133 4.133 9 C 0.034 3.966 10 N -0.616 5.616 11 C 0.594 3.406 12 N -0.688 5.688 13 C 0.170 3.830 14 H 0.082 0.918 15 C -0.111 4.111 16 C -0.011 4.011 17 C -0.488 4.488 18 C 0.076 3.924 19 N -0.891 5.891 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.266 1.266 24 C 0.015 3.985 25 C -0.115 4.115 26 N -0.575 5.575 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.406 0.594 40 H 0.036 0.964 41 H 0.048 0.952 42 H 0.029 0.971 43 H 0.020 0.980 44 H 0.264 0.736 45 H 0.060 0.940 46 H 0.006 0.994 47 H 0.054 0.946 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 23.359 3.662 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.081 3.919 3 C -0.339 4.339 4 C 0.143 3.857 5 N -0.179 5.179 6 C -0.078 4.078 7 C -0.162 4.162 8 C -0.171 4.171 9 C -0.093 4.093 10 N -0.346 5.346 11 C 0.236 3.764 12 N -0.321 5.321 13 C 0.067 3.933 14 H 0.100 0.900 15 C -0.150 4.150 16 C -0.049 4.049 17 C -0.507 4.507 18 C -0.127 4.127 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.191 1.191 24 C -0.023 4.023 25 C -0.154 4.154 26 N -0.300 5.300 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.242 0.758 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.038 0.962 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.025 0.975 47 H 0.072 0.928 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.806 22.393 3.203 22.636 hybrid contribution 0.027 0.131 -0.584 0.599 sum 0.833 22.525 2.619 22.692 Atomic orbital electron populations 1.20736 0.88282 1.03609 1.03473 1.21215 0.96833 0.87143 0.86675 1.21630 0.93353 1.00107 1.18833 1.19739 0.90400 0.87798 0.87731 1.61795 1.07026 1.13646 1.35451 1.23278 0.99937 0.95334 0.89283 1.22520 0.93749 0.98086 1.01817 1.22457 0.97997 0.96788 0.99885 1.22893 0.85089 0.99605 1.01675 1.67682 1.40921 0.97670 1.28299 1.19150 0.85159 0.85802 0.86273 1.44887 1.08826 1.01731 1.76659 1.21065 0.94636 0.79839 0.97803 0.89968 1.21911 0.99857 0.98217 0.95043 1.19701 0.95247 0.93177 0.96816 1.20063 1.34502 0.94992 1.01180 1.24836 0.94666 0.95693 0.97469 1.69833 1.41291 1.03862 1.37884 0.86664 0.79982 0.76977 0.84768 1.20490 1.21666 1.19142 1.19326 0.94945 0.92253 0.95776 1.21959 0.99164 0.96858 0.97404 1.67889 1.07405 1.30034 1.24693 0.89863 0.89936 0.90539 0.84640 0.89075 0.92650 0.90468 0.90358 0.91177 0.90754 0.89745 0.90086 0.75830 0.94545 0.93354 0.95253 0.96157 0.92611 0.92102 0.97530 0.92771 0.94682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.21 36.01 0.37 -0.73 16 2 C 0.23 3.31 6.81 -82.35 -0.56 2.75 16 3 C -0.31 -4.13 9.24 -39.10 -0.36 -4.49 16 4 C 0.39 5.57 6.21 -154.83 -0.96 4.61 16 5 N -0.46 -5.48 5.30 -169.07 -0.90 -6.38 16 6 C 0.05 0.42 6.08 -1.90 -0.01 0.41 16 7 C -0.12 -0.86 7.06 -24.87 -0.18 -1.03 16 8 C -0.13 -1.05 6.93 -25.38 -0.18 -1.23 16 9 C 0.03 0.38 6.36 -2.75 -0.02 0.36 16 10 N -0.62 -10.12 8.32 -13.17 -0.11 -10.23 16 11 C 0.59 10.62 8.40 -322.88 -2.71 7.91 16 12 N -0.69 -12.24 5.22 -55.85 -0.29 -12.53 16 13 C 0.17 3.38 2.34 -67.98 -0.16 3.23 16 14 H 0.08 1.75 7.50 -51.92 -0.39 1.36 16 15 C -0.11 -2.37 5.51 -26.63 -0.15 -2.52 16 16 C -0.01 -0.27 5.59 -27.48 -0.15 -0.42 16 17 C -0.49 -12.84 5.51 -98.92 -0.55 -13.39 16 18 C 0.08 2.07 5.46 -17.82 -0.10 1.98 16 19 N -0.89 -25.56 12.73 55.43 0.71 -24.86 16 20 Si 0.89 21.31 27.27 -169.99 -4.64 16.68 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.24 6.46 56.52 0.37 -5.87 16 24 C 0.01 0.37 5.97 -27.49 -0.16 0.20 16 25 C -0.12 -2.41 5.40 -26.64 -0.14 -2.55 16 26 N -0.57 -10.16 9.13 -10.24 -0.09 -10.25 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.54 7.99 -51.93 -0.42 0.12 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 1.09 6.53 -51.93 -0.34 0.75 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.41 6.62 8.72 -40.82 -0.36 6.26 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.03 0.69 4.78 -51.93 -0.25 0.45 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 45 H 0.06 1.64 7.07 -51.93 -0.37 1.27 16 46 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 47 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -29.87 372.78 -13.77 -43.64 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.05 Total: 3.22 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -6.02 Total: -4.92 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.68 Total: -64.25 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.64 Total: 16.68 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.87 -13.77 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.160 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds