Wall clock time and date at job start Tue Mar 31 2020 11:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38132 * 120.35258 * 2 1 4 4 C 1.39640 * 118.48932 * 180.02562 * 3 2 1 5 5 N 1.38532 * 120.48505 * 180.02562 * 4 3 2 6 6 C 1.48531 * 111.00159 * 62.58518 * 5 4 3 7 7 C 1.54935 * 103.22854 * 159.71856 * 6 5 4 8 8 C 1.54593 * 102.92183 * 322.58163 * 7 6 5 9 9 C 1.47906 * 110.99783 * 179.97438 * 5 4 3 10 10 N 1.32934 * 119.03161 * 0.02562 * 4 3 2 11 11 C 1.32449 * 120.60871 * 359.97438 * 10 4 3 12 12 N 1.38396 * 119.17332 * 180.02562 * 11 10 4 13 13 C 1.46497 * 119.99831 * 180.02562 * 12 11 10 14 14 H 1.09011 * 109.41215 * 324.99307 * 13 12 11 15 15 C 1.52958 * 109.41681 * 84.84963 * 13 12 11 16 16 C 1.53234 * 109.39963 * 183.77359 * 15 13 12 17 17 C 1.51271 * 108.48608 * 305.26843 * 16 15 13 18 18 C 1.37870 * 120.85365 * 231.36446 * 17 16 15 19 19 N 1.31519 * 120.00401 * 180.02562 * 18 17 16 20 20 Si 1.86799 * 119.99846 * 0.02644 * 18 17 16 21 21 H 1.48500 * 109.47602 * 90.00123 * 20 18 17 22 22 H 1.48511 * 109.47129 * 209.99868 * 20 18 17 23 23 H 1.48502 * 109.47208 * 329.99378 * 20 18 17 24 24 C 1.51271 * 118.29693 * 51.39020 * 17 16 15 25 25 C 1.52956 * 109.41473 * 205.13883 * 13 12 11 26 26 N 1.32480 * 120.35738 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46991 * 89.99680 * 1 2 3 28 28 H 1.08996 * 109.47283 * 209.99974 * 1 2 3 29 29 H 1.09004 * 109.46973 * 329.99971 * 1 2 3 30 30 H 1.07995 * 120.75931 * 0.02562 * 3 2 1 31 31 H 1.09001 * 110.66295 * 278.15385 * 6 5 4 32 32 H 1.09005 * 110.66782 * 41.28101 * 6 5 4 33 33 H 1.08997 * 110.72407 * 204.22425 * 7 6 5 34 34 H 1.09002 * 110.72162 * 80.94485 * 7 6 5 35 35 H 1.08996 * 110.30975 * 263.04128 * 8 7 6 36 36 H 1.08999 * 110.30735 * 140.87320 * 8 7 6 37 37 H 1.09001 * 109.92202 * 333.51200 * 9 5 4 38 38 H 1.09006 * 109.91646 * 94.80239 * 9 5 4 39 39 H 0.96997 * 120.00016 * 359.97438 * 12 11 10 40 40 H 1.08995 * 109.48651 * 303.68937 * 15 13 12 41 41 H 1.09003 * 109.47884 * 63.73088 * 15 13 12 42 42 H 1.09004 * 109.62030 * 185.59158 * 16 15 13 43 43 H 1.09001 * 109.84895 * 65.08307 * 16 15 13 44 44 H 0.96996 * 120.00216 * 180.02562 * 19 18 17 45 45 H 1.09005 * 109.62478 * 188.93222 * 24 17 16 46 46 H 1.09003 * 109.62769 * 68.36633 * 24 17 16 47 47 H 1.08999 * 109.47924 * 296.27383 * 25 13 12 48 48 H 1.09004 * 109.48126 * 56.31256 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2050 1.1920 0.0000 4 6 3.6007 1.1466 -0.0005 5 7 4.3419 2.3169 0.0000 6 6 4.0878 3.1074 1.2315 7 6 5.3231 4.0388 1.3161 8 6 6.4747 3.1309 0.8269 9 6 5.7920 2.0258 -0.0002 10 7 4.2076 -0.0361 -0.0016 11 6 3.5014 -1.1566 -0.0016 12 7 4.1640 -2.3716 -0.0021 13 6 3.4008 -3.6221 -0.0026 14 1 2.4932 -3.4929 0.5872 15 6 3.0253 -3.9880 -1.4396 16 6 2.1476 -5.2441 -1.4322 17 6 2.8791 -6.3359 -0.6831 18 6 3.0475 -7.5854 -1.2410 19 7 3.6858 -8.5226 -0.5746 20 14 2.3691 -7.9473 -2.9433 21 1 3.3978 -7.6257 -3.9649 22 1 2.0103 -9.3853 -3.0379 23 1 1.1597 -7.1189 -3.1807 24 6 3.4205 -6.0219 0.6940 25 6 4.2506 -4.7367 0.6097 26 7 2.1765 -1.1432 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6833 2.1375 0.0004 31 1 3.1723 3.6906 1.1322 32 1 4.0371 2.4554 2.1036 33 1 5.4946 4.3595 2.3436 34 1 5.2034 4.8990 0.6574 35 1 7.0013 2.6968 1.6767 36 1 7.1650 3.6987 0.2029 37 1 5.9757 1.0533 0.4565 38 1 6.1730 2.0373 -1.0214 39 1 5.1337 -2.3953 -0.0029 40 1 2.4748 -3.1636 -1.8927 41 1 3.9314 -4.1798 -2.0144 42 1 1.9600 -5.5655 -2.4567 43 1 1.2007 -5.0310 -0.9362 44 1 3.8046 -9.4015 -0.9672 45 1 4.0507 -6.8431 1.0357 46 1 2.5930 -5.8783 1.3888 47 1 5.1270 -4.9103 -0.0147 48 1 4.5690 -4.4433 1.6100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:17 Heat of formation + Delta-G solvation = 36.501877 kcal Electronic energy + Delta-G solvation = -26724.802289 eV Core-core repulsion = 23199.476823 eV Total energy + Delta-G solvation = -3525.325467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18769 -40.01100 -38.99785 -36.19444 -35.22465 -34.03273 -32.48118 -31.51051 -30.93346 -30.13328 -29.17143 -28.35108 -24.76100 -24.09915 -23.31553 -23.16420 -21.93789 -21.77520 -20.97350 -18.75751 -18.57202 -17.95891 -17.04451 -16.88885 -16.42864 -16.25926 -16.13037 -16.05873 -15.14063 -14.97593 -14.59104 -14.38165 -14.31208 -14.21349 -13.99089 -13.83212 -13.56530 -13.45842 -13.28790 -12.93730 -12.80281 -12.72618 -12.54523 -12.30656 -12.17413 -11.99176 -11.88565 -11.70969 -11.66546 -11.48815 -11.36818 -11.14948 -10.86462 -10.55996 -10.53763 -10.05028 -9.79972 -8.89243 -8.17928 -6.11734 0.24999 0.31545 1.37099 1.40741 1.49478 1.89215 2.40328 2.57382 2.94311 3.10378 3.24398 3.59639 3.66532 3.91557 4.00802 4.07891 4.14380 4.21308 4.29964 4.40234 4.45798 4.51630 4.52757 4.69346 4.73477 4.79820 4.83254 4.86405 4.90895 4.93535 4.94982 4.97207 5.05928 5.06828 5.12537 5.18314 5.20719 5.23859 5.25741 5.45510 5.49461 5.55923 5.61722 5.74544 5.79986 5.94793 6.06658 6.30445 6.34646 6.60419 6.93743 7.46191 7.48952 8.92933 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.003004 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.903316 B = 9317.149563 C = 9954.689295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.214 3.786 3 C -0.300 4.300 4 C 0.372 3.628 5 N -0.463 5.463 6 C 0.044 3.956 7 C -0.115 4.115 8 C -0.128 4.128 9 C 0.031 3.969 10 N -0.627 5.627 11 C 0.578 3.422 12 N -0.691 5.691 13 C 0.190 3.810 14 H 0.069 0.931 15 C -0.101 4.101 16 C -0.010 4.010 17 C -0.499 4.499 18 C 0.024 3.976 19 N -0.929 5.929 20 Si 0.939 3.061 21 H -0.275 1.275 22 H -0.290 1.290 23 H -0.255 1.255 24 C 0.013 3.987 25 C -0.103 4.103 26 N -0.605 5.605 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.167 0.833 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.411 0.589 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.029 0.971 43 H 0.020 0.980 44 H 0.263 0.737 45 H 0.032 0.968 46 H 0.002 0.998 47 H 0.049 0.951 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.237 26.776 3.395 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.068 3.932 3 C -0.328 4.328 4 C 0.131 3.869 5 N -0.181 5.181 6 C -0.081 4.081 7 C -0.153 4.153 8 C -0.166 4.166 9 C -0.096 4.096 10 N -0.357 5.357 11 C 0.219 3.781 12 N -0.326 5.326 13 C 0.085 3.915 14 H 0.088 0.912 15 C -0.140 4.140 16 C -0.049 4.049 17 C -0.518 4.518 18 C -0.174 4.174 19 N -0.569 5.569 20 Si 0.765 3.235 21 H -0.201 1.201 22 H -0.217 1.217 23 H -0.180 1.180 24 C -0.025 4.025 25 C -0.141 4.141 26 N -0.332 5.332 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.127 0.873 30 H 0.185 0.815 31 H 0.128 0.872 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.248 0.752 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.039 0.961 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.020 0.980 47 H 0.068 0.932 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.060 25.888 2.941 26.055 hybrid contribution 0.235 -0.780 -0.444 0.928 sum 0.295 25.108 2.497 25.234 Atomic orbital electron populations 1.20842 0.85630 1.04757 1.04407 1.21892 0.98561 0.86739 0.86005 1.21971 0.92949 1.01049 1.16828 1.20201 0.91415 0.87932 0.87339 1.61888 1.07151 1.12450 1.36643 1.23456 1.01911 0.95200 0.87551 1.22545 0.91928 0.97582 1.03261 1.22448 0.98416 0.96043 0.99737 1.22898 0.85187 0.99837 1.01660 1.67699 1.41242 0.98038 1.28753 1.19251 0.85594 0.85988 0.87239 1.44522 1.08811 1.01249 1.77974 1.20587 0.94034 0.80487 0.96380 0.91247 1.21761 0.99067 0.97109 0.96056 1.19685 0.95363 0.93440 0.96377 1.20613 1.33835 0.95565 1.01797 1.25562 0.95323 0.95784 1.00724 1.69957 1.43213 1.04272 1.39492 0.85837 0.79806 0.76817 0.81038 1.20109 1.21669 1.17973 1.19267 0.94812 0.93249 0.95219 1.21729 0.98345 0.95467 0.98569 1.67902 1.07469 1.31920 1.25870 0.88849 0.90878 0.87297 0.81511 0.87188 0.93649 0.88521 0.89247 0.90813 0.89394 0.92016 0.90850 0.75248 0.94082 0.93930 0.95209 0.96128 0.92749 0.94905 0.97972 0.93220 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 10.21 71.24 0.73 -1.12 16 2 C 0.21 5.81 6.81 42.44 0.29 6.10 16 3 C -0.30 -7.26 9.24 22.58 0.21 -7.05 16 4 C 0.37 10.24 6.21 133.19 0.83 11.06 16 5 N -0.46 -10.14 5.30 -688.82 -3.65 -13.79 16 6 C 0.04 0.66 6.08 86.65 0.53 1.19 16 7 C -0.12 -1.22 7.06 31.80 0.22 -0.99 16 8 C -0.13 -1.74 6.93 31.47 0.22 -1.52 16 9 C 0.03 0.66 6.36 86.44 0.55 1.21 16 10 N -0.63 -20.38 8.32 -195.56 -1.63 -22.01 16 11 C 0.58 20.51 8.40 261.51 2.20 22.70 16 12 N -0.69 -24.58 5.22 -330.61 -1.72 -26.30 16 13 C 0.19 7.56 2.34 44.96 0.11 7.67 16 14 H 0.07 2.97 7.50 -2.38 -0.02 2.95 16 15 C -0.10 -4.27 5.51 30.66 0.17 -4.10 16 16 C -0.01 -0.49 5.59 30.11 0.17 -0.33 16 17 C -0.50 -26.56 5.51 -16.17 -0.09 -26.65 16 18 C 0.02 1.35 5.46 84.65 0.46 1.81 16 19 N -0.93 -54.77 12.73 21.45 0.27 -54.50 16 20 Si 0.94 43.92 27.27 68.60 1.87 45.79 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.26 -11.38 6.46 99.48 0.64 -10.73 16 24 C 0.01 0.64 5.97 30.10 0.18 0.82 16 25 C -0.10 -4.32 5.40 30.65 0.17 -4.15 16 26 N -0.60 -21.00 9.13 -186.31 -1.70 -22.70 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.11 1.30 8.09 -2.38 -0.02 1.28 16 30 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 0.79 7.99 -2.38 -0.02 0.77 16 33 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.59 6.53 -2.39 -0.02 1.58 16 38 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.41 13.46 8.72 -92.71 -0.81 12.65 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.03 1.38 4.78 -2.39 -0.01 1.37 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 45 H 0.03 1.82 7.07 -2.38 -0.02 1.80 16 46 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -65.71 372.78 0.45 -65.25 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.08 Total: 21.62 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 6.93 Total: 6.63 kcal Atomic # 7 Polarization: -130.87 SS G_CDS: -8.43 Total: -139.30 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.87 Total: 45.79 kcal Total: -65.71 0.45 -65.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.756 kcal (2) G-P(sol) polarization free energy of solvation -65.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds