Wall clock time and date at job start Tue Mar 31 2020 11:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48501 * 109.47320 * 239.99988 * 3 2 1 5 5 H 1.48500 * 109.47342 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47265 * 119.99601 * 3 2 1 7 7 C 1.37870 * 120.00318 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.85273 * 180.02562 * 7 2 1 9 9 C 1.53228 * 108.53870 * 231.32533 * 8 7 2 10 10 C 1.52960 * 109.40416 * 305.37118 * 9 8 7 11 11 H 1.08998 * 109.36182 * 303.52647 * 10 9 8 12 12 N 1.46503 * 109.41610 * 183.70007 * 10 9 8 13 13 C 1.39364 * 119.99704 * 84.64866 * 12 10 9 14 14 C 1.39579 * 120.07432 * 359.97438 * 13 12 10 15 15 C 1.38356 * 117.96556 * 180.02562 * 14 13 12 16 16 C 1.39590 * 117.96125 * 359.97438 * 15 14 13 17 17 N 1.39355 * 120.07475 * 180.02562 * 16 15 14 18 18 C 1.46842 * 111.00188 * 180.02562 * 17 16 15 19 19 C 1.53039 * 109.52666 * 185.84227 * 18 17 16 20 20 C 1.53123 * 109.27546 * 300.81951 * 19 18 17 21 21 C 1.53120 * 109.21163 * 57.62218 * 20 19 18 22 22 C 1.46848 * 110.99951 * 304.21269 * 17 16 15 23 23 N 1.32267 * 119.84888 * 0.27828 * 16 15 14 24 24 N 1.28353 * 122.18732 * 359.42034 * 23 16 15 25 25 C 1.52963 * 109.81686 * 63.59731 * 10 9 8 26 26 C 1.51269 * 120.84966 * 0.02562 * 7 2 1 27 27 H 0.96999 * 120.00006 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.62567 * 351.03826 * 8 7 2 29 29 H 1.09001 * 109.62820 * 111.41950 * 8 7 2 30 30 H 1.08996 * 109.48651 * 185.39316 * 9 8 7 31 31 H 1.08998 * 109.48309 * 65.35275 * 9 8 7 32 32 H 0.96997 * 120.00537 * 264.64848 * 12 10 9 33 33 H 1.08002 * 121.01940 * 0.04675 * 14 13 12 34 34 H 1.08002 * 121.02376 * 180.02562 * 15 14 13 35 35 H 1.09001 * 109.46203 * 65.82110 * 18 17 16 36 36 H 1.09006 * 109.45199 * 305.85071 * 18 17 16 37 37 H 1.08999 * 109.50420 * 180.88146 * 19 18 17 38 38 H 1.09001 * 109.50541 * 60.75500 * 19 18 17 39 39 H 1.09002 * 109.52319 * 177.56011 * 20 19 18 40 40 H 1.08995 * 109.52318 * 297.68693 * 20 19 18 41 41 H 1.09000 * 109.50719 * 62.32149 * 21 20 19 42 42 H 1.09003 * 109.50116 * 182.43702 * 21 20 19 43 43 H 1.08999 * 109.46555 * 294.17600 * 22 17 16 44 44 H 1.08998 * 109.46337 * 54.15808 * 22 17 16 45 45 H 1.09008 * 109.47993 * 56.38208 * 25 10 9 46 46 H 1.08999 * 109.48554 * 176.42078 * 25 10 9 47 47 H 1.09004 * 109.62418 * 8.95742 * 26 7 2 48 48 H 1.08999 * 109.62650 * 248.39170 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1939 0.0005 8 6 3.5170 -1.2164 0.0011 9 6 3.9911 -2.1316 -1.1327 10 6 3.3404 -3.5075 -0.9809 11 1 3.5740 -3.9111 0.0043 12 7 3.8606 -4.4087 -2.0122 13 6 5.0575 -5.0911 -1.8019 14 6 5.7619 -4.9166 -0.6096 15 6 6.9452 -5.6149 -0.4470 16 6 7.3600 -6.4506 -1.4853 17 7 8.5447 -7.1750 -1.3679 18 6 8.7882 -7.9838 -2.5691 19 6 10.0142 -8.8726 -2.3474 20 6 11.2299 -7.9913 -2.0476 21 6 10.9329 -7.1230 -0.8219 22 6 9.6795 -6.2860 -1.0879 23 7 6.6286 -6.5495 -2.5829 24 7 5.5281 -5.9058 -2.7315 25 6 1.8234 -3.3832 -1.1327 26 6 1.2677 -2.5151 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 3.8982 -0.2078 -0.1589 29 1 3.8772 -1.5965 0.9571 30 1 5.0752 -2.2352 -1.0871 31 1 3.7072 -1.6989 -2.0920 32 1 3.3722 -4.5305 -2.8413 33 1 5.3945 -4.2569 0.1626 34 1 7.5297 -5.5171 0.4559 35 1 8.9655 -7.3261 -3.4200 36 1 7.9177 -8.6089 -2.7684 37 1 10.2039 -9.4614 -3.2448 38 1 9.8322 -9.5401 -1.5051 39 1 12.0961 -8.6217 -1.8463 40 1 11.4365 -7.3516 -2.9056 41 1 10.7658 -7.7623 0.0451 42 1 11.7787 -6.4627 -0.6301 43 1 9.8526 -5.6365 -1.9459 44 1 9.4567 -5.6779 -0.2111 45 1 1.5907 -2.9209 -2.0921 46 1 1.3710 -4.3739 -1.0872 47 1 0.2037 -2.3409 -0.1598 48 1 1.4193 -3.0188 0.9552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:30 Heat of formation + Delta-G solvation = 49.169677 kcal Electronic energy + Delta-G solvation = -26397.260219 eV Core-core repulsion = 22872.484069 eV Total energy + Delta-G solvation = -3524.776150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.08247 -39.09500 -37.69735 -34.95129 -33.93398 -32.55686 -31.74421 -31.10124 -29.93026 -29.20901 -26.95215 -25.14298 -24.48645 -22.90767 -22.64825 -21.63632 -21.41514 -20.08247 -19.52786 -17.93458 -17.38362 -16.88868 -16.13355 -15.41023 -15.02312 -14.96597 -14.62109 -14.52806 -14.26046 -14.03716 -13.78964 -13.50634 -13.36660 -13.14060 -12.87190 -12.47531 -12.42283 -12.19449 -11.85948 -11.59582 -11.42585 -11.20564 -11.13871 -11.03477 -10.77240 -10.74937 -10.71853 -10.57055 -10.35439 -10.20102 -10.05565 -9.77460 -9.43176 -9.10214 -8.96665 -8.69760 -8.56881 -7.38503 -6.19956 -4.12101 1.02074 1.38295 3.19785 3.23396 3.29825 3.30094 3.52255 3.86643 4.30004 4.43738 4.54737 4.59604 4.62967 4.79173 4.84933 5.00759 5.06769 5.08276 5.13859 5.25914 5.34039 5.41809 5.46918 5.54653 5.59491 5.65776 5.68977 5.72343 5.82734 5.86973 5.90203 5.97178 6.08358 6.13296 6.32931 6.43347 6.58213 6.66315 6.70835 6.73993 6.88472 6.93270 7.01593 7.25970 7.39345 7.54072 7.59420 7.71239 7.90749 8.26165 8.85503 9.09247 9.44205 10.89499 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.002582 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.360364 B =10841.415436 C =11466.466911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.494 4.494 8 C -0.008 4.008 9 C -0.120 4.120 10 C 0.161 3.839 11 H 0.071 0.929 12 N -0.707 5.707 13 C 0.336 3.664 14 C -0.157 4.157 15 C -0.090 4.090 16 C 0.185 3.815 17 N -0.465 5.465 18 C 0.064 3.936 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.116 4.116 22 C 0.056 3.944 23 N -0.243 5.243 24 N -0.303 5.303 25 C -0.114 4.114 26 C 0.014 3.986 27 H 0.266 0.734 28 H 0.027 0.973 29 H 0.019 0.981 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.404 0.596 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.038 0.962 47 H 0.062 0.938 48 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.590 -12.893 -1.625 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.513 4.513 8 C -0.047 4.047 9 C -0.159 4.159 10 C 0.057 3.943 11 H 0.089 0.911 12 N -0.339 5.339 13 C 0.092 3.908 14 C -0.190 4.190 15 C -0.121 4.121 16 C -0.058 4.058 17 N -0.186 5.186 18 C -0.063 4.063 19 C -0.157 4.157 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.071 4.071 23 N -0.087 5.087 24 N -0.154 5.154 25 C -0.152 4.152 26 C -0.024 4.024 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.239 0.761 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 18.121 -13.648 -2.571 22.831 hybrid contribution 0.468 2.075 0.488 2.182 sum 18.589 -11.573 -2.083 21.996 Atomic orbital electron populations 1.69808 1.06157 1.27235 1.49202 1.24836 0.94737 0.98594 0.94342 0.86662 0.79443 0.83011 0.78995 1.19991 1.21784 1.19964 1.19986 0.89186 0.91525 1.50585 1.19599 0.96825 0.94694 0.93536 1.22054 0.96827 0.95523 1.01534 1.21149 0.95359 0.88471 0.89302 0.91103 1.45097 1.20448 1.46438 1.21920 1.20114 0.88796 0.90662 0.91216 1.21921 0.95773 1.02807 0.98534 1.21710 0.96289 0.95066 0.98985 1.21088 0.95627 0.96444 0.92658 1.59270 1.00271 1.21739 1.37292 1.21990 0.98787 0.95985 0.89517 1.21659 0.93978 0.97921 1.02186 1.21615 0.98012 0.98470 0.98058 1.21608 0.96145 0.98742 0.98933 1.22270 0.89615 0.93955 1.01223 1.72785 1.01031 1.16941 1.17993 1.72730 1.07971 1.09101 1.25638 1.21920 0.91734 0.98939 1.02633 1.19335 0.98907 0.92652 0.91519 0.92382 0.95488 0.96262 0.94775 0.92426 0.76105 0.83103 0.83735 0.93493 0.89553 0.91147 0.91067 0.91651 0.92128 0.90790 0.91062 0.93924 0.90047 0.92435 0.94287 0.91925 0.97537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 12.73 55.43 0.71 -23.87 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.54 26.80 -169.99 -4.56 15.98 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.49 -12.23 5.51 -98.93 -0.55 -12.78 16 8 C -0.01 -0.18 5.59 -27.49 -0.15 -0.33 16 9 C -0.12 -2.27 5.45 -26.63 -0.15 -2.41 16 10 C 0.16 2.82 2.05 -67.97 -0.14 2.68 16 11 H 0.07 1.23 6.50 -51.93 -0.34 0.89 16 12 N -0.71 -11.38 5.26 -53.78 -0.28 -11.67 16 13 C 0.34 5.46 7.73 -154.61 -1.20 4.26 16 14 C -0.16 -2.24 8.89 -39.04 -0.35 -2.59 16 15 C -0.09 -1.15 9.28 -39.03 -0.36 -1.51 16 16 C 0.18 2.57 6.48 -154.62 -1.00 1.57 16 17 N -0.46 -5.32 4.70 -173.00 -0.81 -6.13 16 18 C 0.06 0.69 4.67 -3.84 -0.02 0.67 16 19 C -0.12 -0.95 6.10 -26.65 -0.16 -1.11 16 20 C -0.12 -0.86 6.00 -26.61 -0.16 -1.02 16 21 C -0.12 -0.82 6.10 -26.64 -0.16 -0.98 16 22 C 0.06 0.51 5.25 -3.82 -0.02 0.49 16 23 N -0.24 -3.94 9.87 31.28 0.31 -3.63 16 24 N -0.30 -5.23 11.52 31.28 0.36 -4.87 16 25 C -0.11 -2.20 5.40 -26.65 -0.14 -2.34 16 26 C 0.01 0.32 5.97 -27.51 -0.16 0.15 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.03 0.58 5.17 -51.93 -0.27 0.32 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.59 7.75 -51.93 -0.40 0.19 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.40 6.22 8.73 -40.82 -0.36 5.86 16 33 H 0.15 2.03 6.31 -52.49 -0.33 1.70 16 34 H 0.14 1.42 7.21 -52.49 -0.38 1.04 16 35 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 36 H 0.09 1.03 7.73 -51.93 -0.40 0.63 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.67 6.73 -51.93 -0.35 0.32 16 45 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 48 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -27.88 365.45 -11.41 -39.29 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.82 Total: 2.69 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -4.82 Total: -13.30 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.28 Total: -50.17 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.56 Total: 15.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.88 -11.41 -39.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.463 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds