Wall clock time and date at job start Tue Mar 31 2020 11:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48501 * 109.47320 * 239.99988 * 3 2 1 5 5 H 1.48500 * 109.47342 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47265 * 119.99601 * 3 2 1 7 7 C 1.37870 * 120.00318 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.85273 * 180.02562 * 7 2 1 9 9 C 1.53228 * 108.53870 * 231.32533 * 8 7 2 10 10 C 1.52960 * 109.40416 * 305.37118 * 9 8 7 11 11 H 1.08998 * 109.36182 * 303.52647 * 10 9 8 12 12 N 1.46503 * 109.41610 * 183.70007 * 10 9 8 13 13 C 1.39364 * 119.99704 * 84.64866 * 12 10 9 14 14 C 1.39579 * 120.07432 * 359.97438 * 13 12 10 15 15 C 1.38356 * 117.96556 * 180.02562 * 14 13 12 16 16 C 1.39590 * 117.96125 * 359.97438 * 15 14 13 17 17 N 1.39355 * 120.07475 * 180.02562 * 16 15 14 18 18 C 1.46842 * 111.00188 * 180.02562 * 17 16 15 19 19 C 1.53039 * 109.52666 * 185.84227 * 18 17 16 20 20 C 1.53123 * 109.27546 * 300.81951 * 19 18 17 21 21 C 1.53120 * 109.21163 * 57.62218 * 20 19 18 22 22 C 1.46848 * 110.99951 * 304.21269 * 17 16 15 23 23 N 1.32267 * 119.84888 * 0.27828 * 16 15 14 24 24 N 1.28353 * 122.18732 * 359.42034 * 23 16 15 25 25 C 1.52963 * 109.81686 * 63.59731 * 10 9 8 26 26 C 1.51269 * 120.84966 * 0.02562 * 7 2 1 27 27 H 0.96999 * 120.00006 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.62567 * 351.03826 * 8 7 2 29 29 H 1.09001 * 109.62820 * 111.41950 * 8 7 2 30 30 H 1.08996 * 109.48651 * 185.39316 * 9 8 7 31 31 H 1.08998 * 109.48309 * 65.35275 * 9 8 7 32 32 H 0.96997 * 120.00537 * 264.64848 * 12 10 9 33 33 H 1.08002 * 121.01940 * 0.04675 * 14 13 12 34 34 H 1.08002 * 121.02376 * 180.02562 * 15 14 13 35 35 H 1.09001 * 109.46203 * 65.82110 * 18 17 16 36 36 H 1.09006 * 109.45199 * 305.85071 * 18 17 16 37 37 H 1.08999 * 109.50420 * 180.88146 * 19 18 17 38 38 H 1.09001 * 109.50541 * 60.75500 * 19 18 17 39 39 H 1.09002 * 109.52319 * 177.56011 * 20 19 18 40 40 H 1.08995 * 109.52318 * 297.68693 * 20 19 18 41 41 H 1.09000 * 109.50719 * 62.32149 * 21 20 19 42 42 H 1.09003 * 109.50116 * 182.43702 * 21 20 19 43 43 H 1.08999 * 109.46555 * 294.17600 * 22 17 16 44 44 H 1.08998 * 109.46337 * 54.15808 * 22 17 16 45 45 H 1.09008 * 109.47993 * 56.38208 * 25 10 9 46 46 H 1.08999 * 109.48554 * 176.42078 * 25 10 9 47 47 H 1.09004 * 109.62418 * 8.95742 * 26 7 2 48 48 H 1.08999 * 109.62650 * 248.39170 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1939 0.0005 8 6 3.5170 -1.2164 0.0011 9 6 3.9911 -2.1316 -1.1327 10 6 3.3404 -3.5075 -0.9809 11 1 3.5740 -3.9111 0.0043 12 7 3.8606 -4.4087 -2.0122 13 6 5.0575 -5.0911 -1.8019 14 6 5.7619 -4.9166 -0.6096 15 6 6.9452 -5.6149 -0.4470 16 6 7.3600 -6.4506 -1.4853 17 7 8.5447 -7.1750 -1.3679 18 6 8.7882 -7.9838 -2.5691 19 6 10.0142 -8.8726 -2.3474 20 6 11.2299 -7.9913 -2.0476 21 6 10.9329 -7.1230 -0.8219 22 6 9.6795 -6.2860 -1.0879 23 7 6.6286 -6.5495 -2.5829 24 7 5.5281 -5.9058 -2.7315 25 6 1.8234 -3.3832 -1.1327 26 6 1.2677 -2.5151 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 3.8982 -0.2078 -0.1589 29 1 3.8772 -1.5965 0.9571 30 1 5.0752 -2.2352 -1.0871 31 1 3.7072 -1.6989 -2.0920 32 1 3.3722 -4.5305 -2.8413 33 1 5.3945 -4.2569 0.1626 34 1 7.5297 -5.5171 0.4559 35 1 8.9655 -7.3261 -3.4200 36 1 7.9177 -8.6089 -2.7684 37 1 10.2039 -9.4614 -3.2448 38 1 9.8322 -9.5401 -1.5051 39 1 12.0961 -8.6217 -1.8463 40 1 11.4365 -7.3516 -2.9056 41 1 10.7658 -7.7623 0.0451 42 1 11.7787 -6.4627 -0.6301 43 1 9.8526 -5.6365 -1.9459 44 1 9.4567 -5.6779 -0.2111 45 1 1.5907 -2.9209 -2.0921 46 1 1.3710 -4.3739 -1.0872 47 1 0.2037 -2.3409 -0.1598 48 1 1.4193 -3.0188 0.9552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:30 Heat of formation + Delta-G solvation = 34.268868 kcal Electronic energy + Delta-G solvation = -26397.906366 eV Core-core repulsion = 22872.484069 eV Total energy + Delta-G solvation = -3525.422297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.16755 -40.04862 -39.08663 -36.29701 -34.97741 -33.92583 -33.13116 -31.82551 -31.54694 -30.55608 -28.45179 -26.16221 -25.44372 -24.08371 -23.68834 -23.17548 -22.83605 -21.17925 -20.67395 -19.11296 -18.39720 -18.06608 -17.83059 -16.44968 -16.39898 -16.23888 -15.77613 -15.63484 -15.16182 -15.04505 -14.86069 -14.67405 -14.44868 -14.31924 -14.16853 -13.99309 -13.90181 -13.49559 -13.12340 -12.90873 -12.76428 -12.61987 -12.34971 -12.18219 -12.12445 -11.98999 -11.80988 -11.65606 -11.45995 -11.39189 -11.37566 -11.17960 -10.87486 -10.65616 -10.54340 -10.46886 -9.87599 -8.57495 -8.17141 -6.10893 -0.07133 0.27942 1.39643 1.41427 1.48353 2.03466 2.40354 2.49509 2.76435 3.11985 3.50028 3.71945 3.73995 3.84274 3.95197 3.99771 4.03011 4.10975 4.16401 4.29719 4.41091 4.45202 4.47798 4.61829 4.65071 4.70279 4.77735 4.85376 4.88062 4.90545 4.95923 4.98831 5.06610 5.08010 5.10217 5.18517 5.22492 5.24365 5.25866 5.30936 5.48713 5.58600 5.64017 5.75658 5.83268 5.87033 6.01767 6.16649 6.33340 6.65148 6.96136 7.47280 7.94912 8.93631 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.002582 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.360364 B =10841.415436 C =11466.466911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.023 3.977 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.499 4.499 8 C -0.011 4.011 9 C -0.112 4.112 10 C 0.177 3.823 11 H 0.081 0.919 12 N -0.708 5.708 13 C 0.324 3.676 14 C -0.160 4.160 15 C -0.080 4.080 16 C 0.187 3.813 17 N -0.464 5.464 18 C 0.065 3.935 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.112 4.112 22 C 0.052 3.948 23 N -0.272 5.272 24 N -0.331 5.331 25 C -0.104 4.104 26 C 0.010 3.990 27 H 0.262 0.738 28 H 0.025 0.975 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.405 0.595 33 H 0.164 0.836 34 H 0.180 0.820 35 H 0.034 0.966 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.034 0.966 44 H 0.095 0.905 45 H 0.046 0.954 46 H 0.054 0.946 47 H 0.028 0.972 48 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.033 -13.722 -0.616 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.176 4.176 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.518 4.518 8 C -0.050 4.050 9 C -0.152 4.152 10 C 0.072 3.928 11 H 0.099 0.901 12 N -0.340 5.340 13 C 0.079 3.921 14 C -0.193 4.193 15 C -0.111 4.111 16 C -0.057 4.057 17 N -0.185 5.185 18 C -0.062 4.062 19 C -0.152 4.152 20 C -0.161 4.161 21 C -0.150 4.150 22 C -0.074 4.074 23 N -0.116 5.116 24 N -0.181 5.181 25 C -0.142 4.142 26 C -0.028 4.028 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.240 0.760 33 H 0.181 0.819 34 H 0.197 0.803 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.052 0.948 44 H 0.113 0.887 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.047 0.953 48 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 21.614 -14.506 -1.576 26.078 hybrid contribution -0.513 2.194 0.207 2.263 sum 21.100 -12.312 -1.369 24.468 Atomic orbital electron populations 1.69951 1.07617 1.27470 1.51961 1.25570 0.95295 1.01654 0.95030 0.85855 0.78348 0.79694 0.79439 1.19400 1.22494 1.18834 1.20639 0.91257 0.91765 1.48158 1.19637 0.94523 0.95516 0.95282 1.21928 0.98174 0.95488 0.99566 1.20815 0.93562 0.88239 0.90164 0.90120 1.44813 1.20903 1.46649 1.21679 1.20231 0.88913 0.90940 0.92005 1.22107 0.96044 1.03107 0.98012 1.22070 0.95810 0.93560 0.99627 1.21500 0.96063 0.95877 0.92269 1.59381 1.00287 1.21744 1.37100 1.21982 0.99417 0.95821 0.88991 1.21640 0.93095 0.97623 1.02813 1.21631 0.97956 0.98494 0.98004 1.21621 0.95567 0.98813 0.98960 1.22437 0.89551 0.94056 1.01362 1.72733 1.01401 1.17979 1.19477 1.72639 1.08792 1.09963 1.26694 1.21700 0.93454 0.98766 1.00290 1.19288 0.97138 0.93287 0.93065 0.92873 0.95634 0.94777 0.92579 0.93842 0.75974 0.81880 0.80265 0.94794 0.91439 0.90074 0.90933 0.89899 0.92384 0.90453 0.89183 0.94798 0.88711 0.93567 0.92696 0.95309 0.97297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.19 12.73 21.44 0.27 -52.91 16 2 C 0.02 1.21 5.46 84.65 0.46 1.68 16 3 Si 0.94 42.14 26.80 68.60 1.84 43.98 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.50 -24.61 5.51 -16.17 -0.09 -24.70 16 8 C -0.01 -0.47 5.59 30.10 0.17 -0.30 16 9 C -0.11 -4.00 5.45 30.66 0.17 -3.84 16 10 C 0.18 5.87 2.05 44.97 0.09 5.96 16 11 H 0.08 2.56 6.50 -2.39 -0.02 2.55 16 12 N -0.71 -21.85 5.26 -324.05 -1.70 -23.55 16 13 C 0.32 10.03 7.73 133.09 1.03 11.06 16 14 C -0.16 -4.14 8.89 22.62 0.20 -3.94 16 15 C -0.08 -1.81 9.28 22.62 0.21 -1.60 16 16 C 0.19 4.88 6.48 133.09 0.86 5.74 16 17 N -0.46 -9.71 4.70 -701.24 -3.29 -13.00 16 18 C 0.07 1.33 4.67 86.33 0.40 1.74 16 19 C -0.11 -1.57 6.10 30.65 0.19 -1.39 16 20 C -0.12 -1.35 6.00 30.68 0.18 -1.17 16 21 C -0.11 -1.20 6.10 30.65 0.19 -1.01 16 22 C 0.05 0.80 5.25 86.33 0.45 1.26 16 23 N -0.27 -8.70 9.87 -54.95 -0.54 -9.24 16 24 N -0.33 -11.28 11.52 -54.95 -0.63 -11.91 16 25 C -0.10 -3.96 5.40 30.65 0.17 -3.79 16 26 C 0.01 0.48 5.97 30.09 0.18 0.66 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.03 1.05 5.17 -2.39 -0.01 1.04 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.77 7.75 -2.39 -0.02 1.75 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.40 12.22 8.73 -92.71 -0.81 11.41 16 33 H 0.16 3.80 6.31 -2.91 -0.02 3.78 16 34 H 0.18 2.69 7.21 -2.91 -0.02 2.67 16 35 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 36 H 0.07 1.62 7.73 -2.38 -0.02 1.60 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.03 0.59 8.14 -2.39 -0.02 0.58 16 44 H 0.09 1.20 6.73 -2.39 -0.02 1.19 16 45 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.03 1.52 7.07 -2.38 -0.02 1.50 16 48 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -61.41 365.45 0.95 -60.46 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.15 Total: 19.82 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 4.86 Total: -13.64 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -5.90 Total: -110.62 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.84 Total: 43.98 kcal Total: -61.41 0.95 -60.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.726 kcal (2) G-P(sol) polarization free energy of solvation -61.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds