Wall clock time and date at job start Tue Mar 31 2020 11:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38125 * 120.75734 * 2 1 4 4 N 1.32488 * 119.28921 * 179.73210 * 3 2 1 5 5 C 1.32499 * 120.93446 * 0.50641 * 4 3 2 6 6 N 1.38388 * 119.17840 * 179.76268 * 5 4 3 7 7 C 1.46495 * 120.00039 * 359.72801 * 6 5 4 8 8 H 1.08994 * 109.41633 * 35.14555 * 7 6 5 9 9 C 1.52961 * 109.41303 * 155.00361 * 7 6 5 10 10 C 1.53227 * 109.41720 * 183.62462 * 9 7 6 11 11 C 1.51265 * 108.53788 * 305.39617 * 10 9 7 12 12 C 1.37881 * 120.83738 * 231.34587 * 11 10 9 13 13 N 1.31518 * 119.99807 * 179.97438 * 12 11 10 14 14 Si 1.86800 * 120.00056 * 359.97438 * 12 11 10 15 15 H 1.48497 * 109.47143 * 89.99994 * 14 12 11 16 16 H 1.48504 * 109.46750 * 210.00189 * 14 12 11 17 17 H 1.48501 * 109.46936 * 329.99845 * 14 12 11 18 18 C 1.51267 * 118.31321 * 51.32263 * 11 10 9 19 19 C 1.52959 * 109.35781 * 275.32001 * 7 6 5 20 20 N 1.32442 * 121.63900 * 359.48744 * 5 4 3 21 21 C 1.32929 * 120.61818 * 0.25102 * 20 5 4 22 22 N 1.38525 * 120.48795 * 179.97438 * 21 20 5 23 23 C 1.48534 * 110.99830 * 279.63930 * 22 21 20 24 24 C 1.54938 * 103.22728 * 159.71950 * 23 22 21 25 25 C 1.54595 * 102.92149 * 322.58753 * 24 23 22 26 26 C 1.47900 * 110.99859 * 37.03347 * 22 21 20 27 27 H 1.09000 * 109.47242 * 264.74813 * 1 2 3 28 28 H 1.09002 * 109.47261 * 24.74677 * 1 2 3 29 29 H 1.08995 * 109.47626 * 144.74497 * 1 2 3 30 30 H 1.07996 * 120.35448 * 359.97438 * 3 2 1 31 31 H 0.96999 * 119.99670 * 179.73385 * 6 5 4 32 32 H 1.09002 * 109.48298 * 303.61831 * 9 7 6 33 33 H 1.09001 * 109.48496 * 63.63988 * 9 7 6 34 34 H 1.09009 * 109.62393 * 65.09855 * 10 9 7 35 35 H 1.08996 * 109.62898 * 185.66111 * 10 9 7 36 36 H 0.97002 * 120.00142 * 180.02562 * 13 12 11 37 37 H 1.09003 * 109.62583 * 188.95085 * 18 11 10 38 38 H 1.08999 * 109.62733 * 68.37667 * 18 11 10 39 39 H 1.09001 * 109.48460 * 296.31206 * 19 7 6 40 40 H 1.09000 * 109.48556 * 56.35456 * 19 7 6 41 41 H 1.09003 * 110.66573 * 278.15281 * 23 22 21 42 42 H 1.09000 * 110.66819 * 41.28705 * 23 22 21 43 43 H 1.08998 * 110.72680 * 204.22438 * 24 23 22 44 44 H 1.09003 * 110.87825 * 81.01822 * 24 23 22 45 45 H 1.09002 * 110.30666 * 263.03991 * 25 24 23 46 46 H 1.09004 * 110.31132 * 140.87434 * 25 24 23 47 47 H 1.09001 * 109.92114 * 333.50705 * 26 22 21 48 48 H 1.09001 * 109.91980 * 94.80714 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2134 1.1870 0.0000 4 7 3.5378 1.1530 0.0054 5 6 4.1896 -0.0005 0.0007 6 7 5.5735 0.0064 0.0016 7 6 6.2995 1.2788 0.0017 8 1 5.7487 2.0103 0.5928 9 6 7.6867 1.0725 0.6123 10 6 8.4121 2.4197 0.6956 11 6 8.4237 3.0456 -0.6815 12 6 9.5988 3.5005 -1.2412 13 7 9.5899 4.0415 -2.4399 14 14 11.2033 3.3484 -0.2969 15 1 11.8447 2.0479 -0.6171 16 1 12.1123 4.4572 -0.6838 17 1 10.9285 3.4193 1.1607 18 6 7.1135 3.1592 -1.4290 19 6 6.4356 1.7850 -1.4353 20 7 3.5497 -1.1601 0.0006 21 6 2.2210 -1.2001 0.0002 22 7 1.5544 -2.4145 -0.0004 23 6 1.5023 -2.9923 -1.3677 24 6 1.2315 -4.4954 -1.1073 25 6 2.0665 -4.7823 0.1617 26 6 2.2654 -3.4098 0.8311 27 1 -0.3634 -0.0941 1.0233 28 1 -0.3634 0.9333 -0.4302 29 1 -0.3634 -0.8391 -0.5931 30 1 1.6916 2.1325 -0.0004 31 1 6.0626 -0.8312 0.0022 32 1 7.5847 0.6520 1.6127 33 1 8.2610 0.3886 -0.0126 34 1 7.8880 3.0753 1.3911 35 1 9.4358 2.2639 1.0358 36 1 10.4166 4.3613 -2.8339 37 1 7.3032 3.4786 -2.4538 38 1 6.4690 3.8831 -0.9303 39 1 7.0395 1.0844 -2.0119 40 1 5.4468 1.8696 -1.8861 41 1 0.6889 -2.5487 -1.9420 42 1 2.4549 -2.8561 -1.8796 43 1 1.5806 -5.1008 -1.9438 44 1 0.1723 -4.6727 -0.9204 45 1 3.0299 -5.2144 -0.1090 46 1 1.5239 -5.4531 0.8280 47 1 3.3274 -3.1677 0.8733 48 1 1.8445 -3.4225 1.8364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050579.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:11 Heat of formation + Delta-G solvation = 52.566676 kcal Electronic energy + Delta-G solvation = -26777.818253 eV Core-core repulsion = 23253.189408 eV Total energy + Delta-G solvation = -3524.628845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.13051 -38.93326 -37.43545 -34.78550 -33.72211 -32.81124 -31.24788 -30.54361 -29.60386 -29.13068 -27.48677 -25.81016 -24.32224 -22.43750 -21.93499 -21.49943 -21.12695 -20.78813 -19.47621 -18.03817 -17.59388 -16.27433 -15.90610 -15.64022 -15.09585 -14.64304 -14.41288 -14.35412 -14.09676 -13.79703 -13.38605 -13.27716 -13.05569 -12.84165 -12.77688 -12.40081 -12.21295 -12.13409 -12.08040 -11.63415 -11.60443 -11.45089 -11.09089 -10.93504 -10.84422 -10.78627 -10.77211 -10.40104 -10.21799 -9.96756 -9.72802 -9.54975 -9.11525 -8.88400 -8.74139 -8.63228 -8.46914 -7.53910 -6.09935 -4.01027 1.24128 1.42680 3.17924 3.26671 3.34850 3.35785 3.58854 4.02034 4.30382 4.37396 4.48364 4.55837 4.70379 5.01573 5.05458 5.11259 5.16849 5.22520 5.23493 5.28940 5.47776 5.55388 5.61184 5.67962 5.71010 5.75781 5.80968 5.87861 5.90879 5.97895 6.11168 6.20555 6.31585 6.40340 6.49272 6.63862 6.73702 6.80225 6.92940 7.01305 7.04166 7.11315 7.25975 7.37188 7.48609 7.65430 7.77459 7.84213 7.89039 8.39617 8.65023 8.97497 9.54173 10.99562 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022914 B = 0.002930 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.691426 B = 9554.759169 C =10094.681107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.248 4.248 3 C 0.196 3.804 4 N -0.560 5.560 5 C 0.580 3.420 6 N -0.690 5.690 7 C 0.169 3.831 8 H 0.082 0.918 9 C -0.115 4.115 10 C -0.010 4.010 11 C -0.489 4.489 12 C 0.076 3.924 13 N -0.889 5.889 14 Si 0.887 3.113 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.267 1.267 18 C 0.014 3.986 19 C -0.111 4.111 20 N -0.607 5.607 21 C 0.373 3.627 22 N -0.464 5.464 23 C 0.044 3.956 24 C -0.121 4.121 25 C -0.129 4.129 26 C 0.032 3.968 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.165 0.835 31 H 0.404 0.596 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.057 0.943 38 H 0.006 0.994 39 H 0.045 0.955 40 H 0.033 0.967 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.457 -14.250 4.275 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.258 4.258 3 C 0.028 3.972 4 N -0.282 5.282 5 C 0.222 3.778 6 N -0.323 5.323 7 C 0.066 3.934 8 H 0.100 0.900 9 C -0.153 4.153 10 C -0.048 4.048 11 C -0.508 4.508 12 C -0.127 4.127 13 N -0.527 5.527 14 Si 0.716 3.284 15 H -0.205 1.205 16 H -0.216 1.216 17 H -0.192 1.192 18 C -0.024 4.024 19 C -0.151 4.151 20 N -0.334 5.334 21 C 0.133 3.867 22 N -0.186 5.186 23 C -0.082 4.082 24 C -0.159 4.159 25 C -0.167 4.167 26 C -0.095 4.095 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.182 0.818 31 H 0.240 0.760 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.690 -13.870 4.341 22.131 hybrid contribution 1.091 -0.607 0.127 1.255 sum -15.599 -14.477 4.468 21.746 Atomic orbital electron populations 1.20274 0.89477 1.01840 1.01926 1.20841 0.98566 0.92956 1.13403 1.22798 0.88511 0.97639 0.88276 1.68071 1.09765 1.28274 1.22140 1.19179 0.87407 0.83744 0.87493 1.44869 0.99874 1.10667 1.76922 1.21066 0.91445 0.82402 0.98464 0.89984 1.21894 0.94842 1.00921 0.97686 1.19689 0.95759 0.91880 0.97503 1.20058 0.93085 1.38313 0.99391 1.24853 0.98450 0.94701 0.94686 1.69842 1.27665 1.40064 1.15079 0.86676 0.83425 0.77729 0.80617 1.20474 1.21622 1.19184 1.19331 0.93427 0.90454 0.99183 1.21968 0.98243 1.00787 0.94059 1.67771 1.10388 1.29834 1.25456 1.19719 0.86182 0.91545 0.89286 1.62730 1.45194 1.00824 1.09885 1.23252 1.01643 0.94532 0.88738 1.22485 1.00881 0.94745 0.97793 1.22389 1.00436 0.96796 0.97061 1.22933 0.99554 0.89979 0.97021 0.91938 0.92325 0.91540 0.81804 0.75969 0.94444 0.92609 0.96162 0.94857 0.92600 0.92468 0.97515 0.93596 0.94790 0.89554 0.92607 0.90715 0.90507 0.91244 0.90933 0.90522 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.77 36.00 0.35 -0.38 16 2 C -0.25 -3.20 5.93 -104.14 -0.62 -3.82 16 3 C 0.20 2.74 10.96 -17.31 -0.19 2.55 16 4 N -0.56 -9.79 9.19 -14.02 -0.13 -9.92 16 5 C 0.58 10.20 8.40 -322.89 -2.71 7.49 16 6 N -0.69 -12.13 5.21 -55.86 -0.29 -12.42 16 7 C 0.17 3.36 2.34 -67.97 -0.16 3.20 16 8 H 0.08 1.74 7.50 -51.93 -0.39 1.35 16 9 C -0.11 -2.28 5.40 -26.63 -0.14 -2.43 16 10 C -0.01 -0.23 5.59 -27.49 -0.15 -0.39 16 11 C -0.49 -12.84 5.51 -98.92 -0.55 -13.38 16 12 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 13 N -0.89 -25.64 12.73 55.43 0.71 -24.93 16 14 Si 0.89 20.97 27.27 -169.99 -4.64 16.33 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.09 6.46 56.52 0.37 -5.73 16 18 C 0.01 0.36 5.97 -27.48 -0.16 0.19 16 19 C -0.11 -2.46 5.51 -26.63 -0.15 -2.61 16 20 N -0.61 -9.75 8.83 -13.17 -0.12 -9.86 16 21 C 0.37 5.24 5.55 -154.84 -0.86 4.38 16 22 N -0.46 -5.37 4.44 -169.07 -0.75 -6.12 16 23 C 0.04 0.44 6.50 -1.90 -0.01 0.43 16 24 C -0.12 -0.92 7.06 -24.87 -0.18 -1.10 16 25 C -0.13 -1.05 6.93 -25.37 -0.18 -1.22 16 26 C 0.03 0.35 6.60 -2.75 -0.02 0.33 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 29 H 0.07 0.61 7.72 -51.93 -0.40 0.21 16 30 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.40 6.49 8.71 -40.82 -0.36 6.14 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 35 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.06 1.59 7.07 -51.93 -0.37 1.22 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.66 7.99 -51.93 -0.42 0.24 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.98 6.59 -51.93 -0.34 0.64 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -29.50 372.50 -13.45 -42.96 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -8.03 Total: 3.15 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -5.82 Total: -4.79 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.58 Total: -63.26 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.64 Total: 16.33 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.50 -13.45 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050579.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.522 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds