Wall clock time and date at job start Tue Mar 31 2020 11:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38125 * 120.75734 * 2 1 4 4 N 1.32488 * 119.28921 * 179.73210 * 3 2 1 5 5 C 1.32499 * 120.93446 * 0.50641 * 4 3 2 6 6 N 1.38388 * 119.17840 * 179.76268 * 5 4 3 7 7 C 1.46495 * 120.00039 * 359.72801 * 6 5 4 8 8 H 1.08994 * 109.41633 * 35.14555 * 7 6 5 9 9 C 1.52961 * 109.41303 * 155.00361 * 7 6 5 10 10 C 1.53227 * 109.41720 * 183.62462 * 9 7 6 11 11 C 1.51265 * 108.53788 * 305.39617 * 10 9 7 12 12 C 1.37881 * 120.83738 * 231.34587 * 11 10 9 13 13 N 1.31518 * 119.99807 * 179.97438 * 12 11 10 14 14 Si 1.86800 * 120.00056 * 359.97438 * 12 11 10 15 15 H 1.48497 * 109.47143 * 89.99994 * 14 12 11 16 16 H 1.48504 * 109.46750 * 210.00189 * 14 12 11 17 17 H 1.48501 * 109.46936 * 329.99845 * 14 12 11 18 18 C 1.51267 * 118.31321 * 51.32263 * 11 10 9 19 19 C 1.52959 * 109.35781 * 275.32001 * 7 6 5 20 20 N 1.32442 * 121.63900 * 359.48744 * 5 4 3 21 21 C 1.32929 * 120.61818 * 0.25102 * 20 5 4 22 22 N 1.38525 * 120.48795 * 179.97438 * 21 20 5 23 23 C 1.48534 * 110.99830 * 279.63930 * 22 21 20 24 24 C 1.54938 * 103.22728 * 159.71950 * 23 22 21 25 25 C 1.54595 * 102.92149 * 322.58753 * 24 23 22 26 26 C 1.47900 * 110.99859 * 37.03347 * 22 21 20 27 27 H 1.09000 * 109.47242 * 264.74813 * 1 2 3 28 28 H 1.09002 * 109.47261 * 24.74677 * 1 2 3 29 29 H 1.08995 * 109.47626 * 144.74497 * 1 2 3 30 30 H 1.07996 * 120.35448 * 359.97438 * 3 2 1 31 31 H 0.96999 * 119.99670 * 179.73385 * 6 5 4 32 32 H 1.09002 * 109.48298 * 303.61831 * 9 7 6 33 33 H 1.09001 * 109.48496 * 63.63988 * 9 7 6 34 34 H 1.09009 * 109.62393 * 65.09855 * 10 9 7 35 35 H 1.08996 * 109.62898 * 185.66111 * 10 9 7 36 36 H 0.97002 * 120.00142 * 180.02562 * 13 12 11 37 37 H 1.09003 * 109.62583 * 188.95085 * 18 11 10 38 38 H 1.08999 * 109.62733 * 68.37667 * 18 11 10 39 39 H 1.09001 * 109.48460 * 296.31206 * 19 7 6 40 40 H 1.09000 * 109.48556 * 56.35456 * 19 7 6 41 41 H 1.09003 * 110.66573 * 278.15281 * 23 22 21 42 42 H 1.09000 * 110.66819 * 41.28705 * 23 22 21 43 43 H 1.08998 * 110.72680 * 204.22438 * 24 23 22 44 44 H 1.09003 * 110.87825 * 81.01822 * 24 23 22 45 45 H 1.09002 * 110.30666 * 263.03991 * 25 24 23 46 46 H 1.09004 * 110.31132 * 140.87434 * 25 24 23 47 47 H 1.09001 * 109.92114 * 333.50705 * 26 22 21 48 48 H 1.09001 * 109.91980 * 94.80714 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2134 1.1870 0.0000 4 7 3.5378 1.1530 0.0054 5 6 4.1896 -0.0005 0.0007 6 7 5.5735 0.0064 0.0016 7 6 6.2995 1.2788 0.0017 8 1 5.7487 2.0103 0.5928 9 6 7.6867 1.0725 0.6123 10 6 8.4121 2.4197 0.6956 11 6 8.4237 3.0456 -0.6815 12 6 9.5988 3.5005 -1.2412 13 7 9.5899 4.0415 -2.4399 14 14 11.2033 3.3484 -0.2969 15 1 11.8447 2.0479 -0.6171 16 1 12.1123 4.4572 -0.6838 17 1 10.9285 3.4193 1.1607 18 6 7.1135 3.1592 -1.4290 19 6 6.4356 1.7850 -1.4353 20 7 3.5497 -1.1601 0.0006 21 6 2.2210 -1.2001 0.0002 22 7 1.5544 -2.4145 -0.0004 23 6 1.5023 -2.9923 -1.3677 24 6 1.2315 -4.4954 -1.1073 25 6 2.0665 -4.7823 0.1617 26 6 2.2654 -3.4098 0.8311 27 1 -0.3634 -0.0941 1.0233 28 1 -0.3634 0.9333 -0.4302 29 1 -0.3634 -0.8391 -0.5931 30 1 1.6916 2.1325 -0.0004 31 1 6.0626 -0.8312 0.0022 32 1 7.5847 0.6520 1.6127 33 1 8.2610 0.3886 -0.0126 34 1 7.8880 3.0753 1.3911 35 1 9.4358 2.2639 1.0358 36 1 10.4166 4.3613 -2.8339 37 1 7.3032 3.4786 -2.4538 38 1 6.4690 3.8831 -0.9303 39 1 7.0395 1.0844 -2.0119 40 1 5.4468 1.8696 -1.8861 41 1 0.6889 -2.5487 -1.9420 42 1 2.4549 -2.8561 -1.8796 43 1 1.5806 -5.1008 -1.9438 44 1 0.1723 -4.6727 -0.9204 45 1 3.0299 -5.2144 -0.1090 46 1 1.5239 -5.4531 0.8280 47 1 3.3274 -3.1677 0.8733 48 1 1.8445 -3.4225 1.8364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050579.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:10 Heat of formation + Delta-G solvation = 38.064339 kcal Electronic energy + Delta-G solvation = -26778.447122 eV Core-core repulsion = 23253.189408 eV Total energy + Delta-G solvation = -3525.257713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.23753 -39.95736 -38.97025 -36.23658 -34.76754 -34.34652 -32.84292 -31.54330 -31.37434 -29.91435 -29.11862 -26.98602 -25.36506 -24.03092 -23.46454 -22.85010 -22.07957 -21.83720 -21.14201 -19.29139 -18.69694 -18.02093 -16.97863 -16.64911 -16.36996 -16.24587 -16.10803 -15.36587 -15.07507 -14.99976 -14.83807 -14.69357 -14.21015 -14.07623 -14.02216 -13.77308 -13.61521 -13.36055 -13.15094 -12.92616 -12.79058 -12.76065 -12.61056 -12.32494 -12.16216 -12.02442 -11.86186 -11.80327 -11.61985 -11.42562 -11.40149 -11.14627 -10.83981 -10.55018 -10.48015 -10.14969 -9.77335 -8.81968 -8.16717 -6.12075 0.12588 0.28074 1.39288 1.42072 1.51306 1.91373 2.41012 2.62994 2.85723 3.11165 3.32462 3.63057 3.78048 3.85812 3.99381 4.03205 4.16799 4.22851 4.25057 4.31707 4.36780 4.51694 4.52834 4.68977 4.72055 4.87667 4.88386 4.92577 4.97724 4.98455 5.00967 5.01868 5.05412 5.12428 5.18739 5.20821 5.22387 5.23373 5.33084 5.50709 5.55163 5.57984 5.61567 5.74509 5.80770 5.94340 6.01503 6.22201 6.34059 6.57199 6.94188 7.42088 7.46136 8.94520 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022914 B = 0.002930 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.691426 B = 9554.759169 C =10094.681107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.237 4.237 3 C 0.184 3.816 4 N -0.592 5.592 5 C 0.561 3.439 6 N -0.692 5.692 7 C 0.189 3.811 8 H 0.069 0.931 9 C -0.107 4.107 10 C -0.012 4.012 11 C -0.500 4.500 12 C 0.020 3.980 13 N -0.933 5.933 14 Si 0.945 3.055 15 H -0.272 1.272 16 H -0.294 1.294 17 H -0.250 1.250 18 C 0.014 3.986 19 C -0.096 4.096 20 N -0.614 5.614 21 C 0.358 3.642 22 N -0.459 5.459 23 C 0.041 3.959 24 C -0.112 4.112 25 C -0.124 4.124 26 C 0.029 3.971 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.194 0.806 31 H 0.411 0.589 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.023 0.977 35 H 0.040 0.960 36 H 0.263 0.737 37 H 0.022 0.978 38 H -0.002 1.002 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.098 0.902 42 H 0.032 0.968 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.052 0.948 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.241 -16.242 5.805 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.247 4.247 3 C 0.018 3.982 4 N -0.315 5.315 5 C 0.203 3.797 6 N -0.327 5.327 7 C 0.084 3.916 8 H 0.087 0.913 9 C -0.146 4.146 10 C -0.050 4.050 11 C -0.520 4.520 12 C -0.178 4.178 13 N -0.573 5.573 14 Si 0.771 3.229 15 H -0.198 1.198 16 H -0.220 1.220 17 H -0.174 1.174 18 C -0.024 4.024 19 C -0.135 4.135 20 N -0.342 5.342 21 C 0.119 3.881 22 N -0.181 5.181 23 C -0.085 4.085 24 C -0.150 4.150 25 C -0.162 4.162 26 C -0.098 4.098 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.211 0.789 31 H 0.248 0.752 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.017 0.983 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.116 0.884 42 H 0.051 0.949 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.070 0.930 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.538 -15.894 5.890 25.119 hybrid contribution 1.434 0.009 -0.376 1.483 sum -17.104 -15.885 5.514 23.985 Atomic orbital electron populations 1.20343 0.86688 1.03239 1.02789 1.21271 1.00448 0.92110 1.10848 1.23363 0.87638 0.99423 0.87813 1.68048 1.11571 1.28645 1.23208 1.19274 0.87360 0.84406 0.88666 1.44498 1.00167 1.09822 1.78251 1.20594 0.91681 0.83249 0.96041 0.91270 1.21759 0.94211 0.99221 0.99366 1.19700 0.96705 0.93271 0.95372 1.20640 0.93016 1.37442 1.00870 1.25681 1.01932 0.94735 0.95498 1.69995 1.28340 1.42024 1.16972 0.85742 0.79358 0.77633 0.80188 1.19782 1.22047 1.17371 1.19251 0.93988 0.92126 0.97052 1.21739 0.97195 0.98539 0.96039 1.67785 1.11574 1.29254 1.25549 1.20200 0.85780 0.93107 0.88981 1.62853 1.44275 1.00259 1.10754 1.23351 1.00881 0.96434 0.87830 1.22495 1.01753 0.92861 0.97890 1.22386 1.00896 0.95430 0.97484 1.22978 0.97994 0.91274 0.97582 0.90989 0.90290 0.90970 0.78915 0.75234 0.91585 0.92511 0.95883 0.94191 0.92822 0.95923 0.98329 0.94761 0.95158 0.88366 0.94945 0.89412 0.88938 0.91352 0.89035 0.92984 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 9.77 71.24 0.70 -0.46 16 2 C -0.24 -5.72 5.93 -19.55 -0.12 -5.83 16 3 C 0.18 4.92 10.96 84.57 0.93 5.85 16 4 N -0.59 -20.55 9.19 -198.27 -1.82 -22.38 16 5 C 0.56 19.72 8.40 261.52 2.20 21.92 16 6 N -0.69 -24.24 5.21 -330.63 -1.72 -25.96 16 7 C 0.19 7.46 2.34 44.97 0.11 7.57 16 8 H 0.07 2.94 7.50 -2.39 -0.02 2.92 16 9 C -0.11 -4.11 5.40 30.66 0.17 -3.95 16 10 C -0.01 -0.55 5.59 30.10 0.17 -0.39 16 11 C -0.50 -26.60 5.51 -16.17 -0.09 -26.69 16 12 C 0.02 1.08 5.46 84.66 0.46 1.54 16 13 N -0.93 -55.72 12.73 21.45 0.27 -55.45 16 14 Si 0.95 43.04 27.27 68.60 1.87 44.91 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 17 H -0.25 -10.58 6.46 99.48 0.64 -9.94 16 18 C 0.01 0.73 5.97 30.11 0.18 0.91 16 19 C -0.10 -4.35 5.51 30.66 0.17 -4.18 16 20 N -0.61 -19.60 8.83 -195.58 -1.73 -21.33 16 21 C 0.36 9.71 5.55 133.19 0.74 10.45 16 22 N -0.46 -9.86 4.44 -688.82 -3.06 -12.92 16 23 C 0.04 0.74 6.50 86.65 0.56 1.31 16 24 C -0.11 -1.40 7.06 31.80 0.22 -1.17 16 25 C -0.12 -1.74 6.93 31.47 0.22 -1.52 16 26 C 0.03 0.58 6.60 86.45 0.57 1.15 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 0.97 8.07 -2.39 -0.02 0.95 16 29 H 0.07 1.10 7.72 -2.39 -0.02 1.08 16 30 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.41 13.05 8.71 -92.71 -0.81 12.24 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.04 1.72 4.78 -2.39 -0.01 1.71 16 36 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.02 1.31 7.07 -2.39 -0.02 1.29 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.03 0.75 7.99 -2.39 -0.02 0.73 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.05 1.32 6.59 -2.39 -0.02 1.30 16 48 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.74 372.50 1.07 -64.67 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.08 Total: 21.96 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 7.18 Total: 6.51 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -8.06 Total: -138.04 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.87 Total: 44.91 kcal Total: -65.74 1.07 -64.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050579.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.737 kcal (2) G-P(sol) polarization free energy of solvation -65.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds