Wall clock time and date at job start Tue Mar 31 2020 10:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00230 * 2 1 4 4 H 1.48497 * 109.47034 * 270.00549 * 3 2 1 5 5 H 1.48503 * 109.46861 * 30.00036 * 3 2 1 6 6 H 1.48493 * 109.47489 * 150.00331 * 3 2 1 7 7 C 1.37880 * 119.99947 * 180.02562 * 2 1 3 8 8 C 1.51279 * 120.84861 * 180.02562 * 7 2 1 9 9 C 1.53234 * 108.48278 * 231.36392 * 8 7 2 10 10 C 1.52956 * 109.40091 * 305.27008 * 9 8 7 11 11 H 1.08998 * 109.41549 * 303.62843 * 10 9 8 12 12 N 1.46506 * 109.41237 * 183.77411 * 10 9 8 13 13 C 1.39316 * 119.99818 * 84.85565 * 12 10 9 14 14 C 1.39085 * 119.62842 * 0.02562 * 13 12 10 15 15 C 1.38276 * 119.17323 * 180.02562 * 14 13 12 16 16 C 1.39415 * 118.44428 * 359.97438 * 15 14 13 17 17 N 1.40047 * 120.40919 * 179.72476 * 16 15 14 18 18 C 1.46965 * 110.99548 * 56.20249 * 17 16 15 19 19 C 1.53054 * 109.36215 * 183.18838 * 18 17 16 20 20 N 1.46957 * 109.36225 * 301.60170 * 19 18 17 21 21 C 1.46949 * 110.88277 * 59.32253 * 20 19 18 22 22 C 1.46955 * 111.00275 * 179.97438 * 17 16 15 23 23 C 1.38632 * 119.18448 * 0.02562 * 16 15 14 24 24 N 1.31995 * 120.75326 * 359.97438 * 23 16 15 25 25 C 1.52956 * 109.76441 * 63.70252 * 10 9 8 26 26 C 1.51268 * 120.85275 * 359.97438 * 7 2 1 27 27 H 0.96999 * 120.00092 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.62548 * 351.04164 * 8 7 2 29 29 H 1.08995 * 109.62179 * 111.41678 * 8 7 2 30 30 H 1.08999 * 109.42703 * 185.32437 * 9 8 7 31 31 H 1.09003 * 109.54070 * 65.28065 * 9 8 7 32 32 H 0.96997 * 120.00184 * 264.85074 * 12 10 9 33 33 H 1.07996 * 120.41008 * 0.03570 * 14 13 12 34 34 H 1.08001 * 120.77921 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.48741 * 303.15773 * 18 17 16 36 36 H 1.08994 * 109.48877 * 63.22134 * 18 17 16 37 37 H 1.08998 * 109.48890 * 181.63060 * 19 18 17 38 38 H 1.09001 * 109.50801 * 61.57654 * 19 18 17 39 39 H 1.00902 * 110.99789 * 295.44659 * 20 19 18 40 40 H 1.08999 * 109.48795 * 180.71333 * 21 20 19 41 41 H 1.08994 * 109.50991 * 60.65554 * 21 20 19 42 42 H 1.08998 * 109.49212 * 296.78671 * 22 17 16 43 43 H 1.08998 * 109.48788 * 56.84617 * 22 17 16 44 44 H 1.08003 * 119.62194 * 179.97438 * 23 16 15 45 45 H 1.09003 * 109.47803 * 56.34438 * 25 10 9 46 46 H 1.09000 * 109.48822 * 176.38960 * 25 10 9 47 47 H 1.09000 * 109.62229 * 8.96650 * 26 7 2 48 48 H 1.08992 * 109.78597 * 248.48267 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9899 -2.1302 -1.1356 10 6 3.3403 -3.5067 -0.9840 11 1 3.5739 -3.9111 0.0008 12 7 3.8607 -4.4070 -2.0161 13 6 5.0556 -5.0915 -1.8052 14 6 5.7479 -4.9149 -0.6119 15 6 6.9332 -5.5985 -0.4127 16 6 7.3900 -6.4439 -1.4228 17 7 8.5883 -7.1518 -1.2669 18 6 8.5588 -7.9756 -0.0502 19 6 9.9117 -8.6693 0.1259 20 7 10.1945 -9.4930 -1.0577 21 6 10.2241 -8.6693 -2.2743 22 6 8.8709 -7.9761 -2.4502 23 6 6.6466 -6.5705 -2.5861 24 7 5.5190 -5.9024 -2.7425 25 6 1.8234 -3.3823 -1.1357 26 6 1.2677 -2.5152 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 3.8983 -0.2078 -0.1590 29 1 3.8772 -1.5974 0.9557 30 1 5.0741 -2.2329 -1.0908 31 1 3.7048 -1.6974 -2.0945 32 1 3.3733 -4.5265 -2.8461 33 1 5.3643 -4.2521 0.1497 34 1 7.4921 -5.4804 0.5039 35 1 8.3601 -7.3412 0.8137 36 1 7.7738 -8.7266 -0.1385 37 1 9.8826 -9.3035 1.0119 38 1 10.6934 -7.9185 0.2417 39 1 9.5250 -10.2429 -1.1448 40 1 10.4226 -9.3036 -3.1382 41 1 11.0091 -7.9183 -2.1864 42 1 8.0894 -8.7271 -2.5654 43 1 8.8998 -7.3423 -3.3364 44 1 6.9941 -7.2231 -3.3734 45 1 1.5908 -2.9191 -2.0947 46 1 1.3710 -4.3730 -1.0910 47 1 0.2037 -2.3409 -0.1601 48 1 1.4169 -3.0209 0.9534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:32 Heat of formation + Delta-G solvation = 44.755202 kcal Electronic energy + Delta-G solvation = -26367.123023 eV Core-core repulsion = 22842.155448 eV Total energy + Delta-G solvation = -3524.967576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76501 -39.12860 -37.44917 -35.17834 -33.72743 -32.24017 -31.65324 -31.19374 -29.82604 -28.64287 -26.94242 -25.29190 -24.64195 -22.79504 -22.33759 -21.51021 -21.44270 -20.59198 -19.43321 -17.83780 -17.09245 -16.60274 -16.10333 -15.57581 -15.24525 -15.08410 -14.78887 -14.59491 -14.46065 -14.09325 -14.01808 -13.58098 -13.26619 -13.09869 -12.83366 -12.50216 -12.42664 -12.33220 -12.09666 -11.72088 -11.68698 -11.66638 -11.35451 -11.14368 -10.96172 -10.76001 -10.51656 -10.18688 -10.04360 -9.79475 -9.49138 -9.41291 -9.06225 -8.96834 -8.77468 -8.55716 -8.53027 -7.05114 -6.16614 -4.08039 1.38655 1.55252 3.22818 3.32324 3.33398 3.39504 3.58362 3.87162 4.05200 4.33139 4.58169 4.64055 4.72990 4.75506 4.82875 4.90239 4.96545 5.10538 5.15568 5.22659 5.30908 5.39177 5.40592 5.55493 5.60174 5.71226 5.77821 5.81342 5.94797 6.04464 6.07375 6.38297 6.41268 6.51641 6.52089 6.64855 6.75657 6.78629 6.80493 6.92404 6.94015 7.01948 7.09202 7.33115 7.41380 7.59008 7.64102 7.73376 7.97667 8.30419 8.41861 8.89598 9.48051 10.92828 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.030142 B = 0.002490 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.706244 B =11242.919591 C =11534.883387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.491 4.491 8 C -0.014 4.014 9 C -0.119 4.119 10 C 0.163 3.837 11 H 0.070 0.930 12 N -0.718 5.718 13 C 0.396 3.604 14 C -0.214 4.214 15 C -0.047 4.047 16 C -0.025 4.025 17 N -0.473 5.473 18 C 0.017 3.983 19 C 0.058 3.942 20 N -0.687 5.687 21 C 0.059 3.941 22 C 0.011 3.989 23 C 0.105 3.895 24 N -0.535 5.535 25 C -0.114 4.114 26 C 0.014 3.986 27 H 0.265 0.735 28 H 0.032 0.968 29 H 0.018 0.982 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.399 0.601 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.339 0.661 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.149 0.851 45 H 0.055 0.945 46 H 0.036 0.964 47 H 0.061 0.939 48 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.581 -16.315 -2.219 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.510 4.510 8 C -0.052 4.052 9 C -0.159 4.159 10 C 0.060 3.940 11 H 0.088 0.912 12 N -0.348 5.348 13 C 0.159 3.841 14 C -0.240 4.240 15 C -0.075 4.075 16 C -0.126 4.126 17 N -0.191 5.191 18 C -0.111 4.111 19 C -0.072 4.072 20 N -0.315 5.315 21 C -0.071 4.071 22 C -0.118 4.118 23 C -0.055 4.055 24 N -0.253 5.253 25 C -0.152 4.152 26 C -0.024 4.024 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.233 0.767 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.156 0.844 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.166 0.834 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.080 0.920 48 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 16.981 -15.841 -2.663 23.374 hybrid contribution -0.905 0.789 0.084 1.204 sum 16.076 -15.051 -2.579 22.173 Atomic orbital electron populations 1.69827 1.06168 1.27042 1.49535 1.24848 0.94721 0.98623 0.94429 0.86660 0.79961 0.83268 0.78487 1.20413 1.21597 1.19166 1.20018 0.89302 0.91456 1.50243 1.19727 0.96707 0.95185 0.93552 1.22042 0.97026 0.95533 1.01264 1.21076 0.95004 0.88566 0.89399 0.91186 1.45180 1.21375 1.46676 1.21524 1.18479 0.87350 0.89184 0.89122 1.21471 0.97517 1.05980 0.99002 1.20923 0.94790 0.93647 0.98108 1.19528 0.92577 1.02627 0.97830 1.59484 1.30266 1.25954 1.03380 1.23013 0.98584 0.96382 0.93116 1.22151 0.95251 0.96444 0.93327 1.60725 1.55029 1.12703 1.03067 1.22140 0.95790 0.96420 0.92737 1.23001 0.98550 0.96422 0.93862 1.22462 0.89377 0.97223 0.96458 1.67111 1.15199 1.11311 1.31681 1.21928 0.92078 0.98735 1.02484 1.19344 0.98838 0.92724 0.91519 0.92513 0.95000 0.96383 0.94639 0.92651 0.76662 0.84380 0.85182 0.89651 0.94338 0.89959 0.89791 0.84408 0.89904 0.89795 0.93981 0.89421 0.83401 0.92587 0.94504 0.92050 0.97609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 12.73 55.43 0.71 -24.25 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 20.73 27.27 -169.99 -4.64 16.10 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.03 6.46 56.52 0.37 -5.67 16 7 C -0.49 -12.44 5.51 -98.92 -0.55 -12.98 16 8 C -0.01 -0.30 5.60 -27.48 -0.15 -0.46 16 9 C -0.12 -2.36 5.41 -26.63 -0.14 -2.50 16 10 C 0.16 2.99 2.04 -67.97 -0.14 2.85 16 11 H 0.07 1.29 6.44 -51.93 -0.33 0.95 16 12 N -0.72 -12.00 5.25 -53.92 -0.28 -12.28 16 13 C 0.40 6.50 7.63 -154.80 -1.18 5.32 16 14 C -0.21 -3.23 8.81 -39.25 -0.35 -3.58 16 15 C -0.05 -0.62 9.32 -39.13 -0.36 -0.98 16 16 C -0.02 -0.31 5.65 -83.52 -0.47 -0.78 16 17 N -0.47 -4.84 4.77 -170.76 -0.81 -5.65 16 18 C 0.02 0.15 5.38 -3.76 -0.02 0.13 16 19 C 0.06 0.41 6.72 -3.76 -0.03 0.39 16 20 N -0.69 -4.90 6.91 -113.64 -0.79 -5.68 16 21 C 0.06 0.41 6.72 -3.77 -0.03 0.39 16 22 C 0.01 0.09 4.30 -3.77 -0.02 0.07 16 23 C 0.11 1.41 10.00 -17.34 -0.17 1.24 16 24 N -0.54 -8.55 10.39 -12.23 -0.13 -8.67 16 25 C -0.11 -2.28 5.40 -26.61 -0.14 -2.42 16 26 C 0.01 0.32 5.97 -27.46 -0.16 0.16 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.03 0.72 4.78 -51.93 -0.25 0.47 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.65 7.70 -51.93 -0.40 0.25 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.40 6.41 8.73 -40.82 -0.36 6.05 16 33 H 0.14 2.09 6.12 -52.49 -0.32 1.77 16 34 H 0.13 1.44 7.26 -52.49 -0.38 1.06 16 35 H 0.09 0.72 6.88 -51.93 -0.36 0.36 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.34 2.09 8.89 -39.29 -0.35 1.74 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.34 7.61 -51.93 -0.40 -0.05 16 43 H 0.09 0.72 7.18 -51.93 -0.37 0.35 16 44 H 0.15 1.64 5.82 -52.48 -0.31 1.33 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 48 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -28.12 362.13 -12.08 -40.20 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.59 Total: 5.99 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -4.01 Total: -11.22 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -1.30 Total: -56.53 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.64 Total: 16.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.12 -12.08 -40.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.960 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds