Wall clock time and date at job start Tue Mar 31 2020 10:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00230 * 2 1 4 4 H 1.48497 * 109.47034 * 270.00549 * 3 2 1 5 5 H 1.48503 * 109.46861 * 30.00036 * 3 2 1 6 6 H 1.48493 * 109.47489 * 150.00331 * 3 2 1 7 7 C 1.37880 * 119.99947 * 180.02562 * 2 1 3 8 8 C 1.51279 * 120.84861 * 180.02562 * 7 2 1 9 9 C 1.53234 * 108.48278 * 231.36392 * 8 7 2 10 10 C 1.52956 * 109.40091 * 305.27008 * 9 8 7 11 11 H 1.08998 * 109.41549 * 303.62843 * 10 9 8 12 12 N 1.46506 * 109.41237 * 183.77411 * 10 9 8 13 13 C 1.39316 * 119.99818 * 84.85565 * 12 10 9 14 14 C 1.39085 * 119.62842 * 0.02562 * 13 12 10 15 15 C 1.38276 * 119.17323 * 180.02562 * 14 13 12 16 16 C 1.39415 * 118.44428 * 359.97438 * 15 14 13 17 17 N 1.40047 * 120.40919 * 179.72476 * 16 15 14 18 18 C 1.46965 * 110.99548 * 56.20249 * 17 16 15 19 19 C 1.53054 * 109.36215 * 183.18838 * 18 17 16 20 20 N 1.46957 * 109.36225 * 301.60170 * 19 18 17 21 21 C 1.46949 * 110.88277 * 59.32253 * 20 19 18 22 22 C 1.46955 * 111.00275 * 179.97438 * 17 16 15 23 23 C 1.38632 * 119.18448 * 0.02562 * 16 15 14 24 24 N 1.31995 * 120.75326 * 359.97438 * 23 16 15 25 25 C 1.52956 * 109.76441 * 63.70252 * 10 9 8 26 26 C 1.51268 * 120.85275 * 359.97438 * 7 2 1 27 27 H 0.96999 * 120.00092 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.62548 * 351.04164 * 8 7 2 29 29 H 1.08995 * 109.62179 * 111.41678 * 8 7 2 30 30 H 1.08999 * 109.42703 * 185.32437 * 9 8 7 31 31 H 1.09003 * 109.54070 * 65.28065 * 9 8 7 32 32 H 0.96997 * 120.00184 * 264.85074 * 12 10 9 33 33 H 1.07996 * 120.41008 * 0.03570 * 14 13 12 34 34 H 1.08001 * 120.77921 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.48741 * 303.15773 * 18 17 16 36 36 H 1.08994 * 109.48877 * 63.22134 * 18 17 16 37 37 H 1.08998 * 109.48890 * 181.63060 * 19 18 17 38 38 H 1.09001 * 109.50801 * 61.57654 * 19 18 17 39 39 H 1.00902 * 110.99789 * 295.44659 * 20 19 18 40 40 H 1.08999 * 109.48795 * 180.71333 * 21 20 19 41 41 H 1.08994 * 109.50991 * 60.65554 * 21 20 19 42 42 H 1.08998 * 109.49212 * 296.78671 * 22 17 16 43 43 H 1.08998 * 109.48788 * 56.84617 * 22 17 16 44 44 H 1.08003 * 119.62194 * 179.97438 * 23 16 15 45 45 H 1.09003 * 109.47803 * 56.34438 * 25 10 9 46 46 H 1.09000 * 109.48822 * 176.38960 * 25 10 9 47 47 H 1.09000 * 109.62229 * 8.96650 * 26 7 2 48 48 H 1.08992 * 109.78597 * 248.48267 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9899 -2.1302 -1.1356 10 6 3.3403 -3.5067 -0.9840 11 1 3.5739 -3.9111 0.0008 12 7 3.8607 -4.4070 -2.0161 13 6 5.0556 -5.0915 -1.8052 14 6 5.7479 -4.9149 -0.6119 15 6 6.9332 -5.5985 -0.4127 16 6 7.3900 -6.4439 -1.4228 17 7 8.5883 -7.1518 -1.2669 18 6 8.5588 -7.9756 -0.0502 19 6 9.9117 -8.6693 0.1259 20 7 10.1945 -9.4930 -1.0577 21 6 10.2241 -8.6693 -2.2743 22 6 8.8709 -7.9761 -2.4502 23 6 6.6466 -6.5705 -2.5861 24 7 5.5190 -5.9024 -2.7425 25 6 1.8234 -3.3823 -1.1357 26 6 1.2677 -2.5152 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 3.8983 -0.2078 -0.1590 29 1 3.8772 -1.5974 0.9557 30 1 5.0741 -2.2329 -1.0908 31 1 3.7048 -1.6974 -2.0945 32 1 3.3733 -4.5265 -2.8461 33 1 5.3643 -4.2521 0.1497 34 1 7.4921 -5.4804 0.5039 35 1 8.3601 -7.3412 0.8137 36 1 7.7738 -8.7266 -0.1385 37 1 9.8826 -9.3035 1.0119 38 1 10.6934 -7.9185 0.2417 39 1 9.5250 -10.2429 -1.1448 40 1 10.4226 -9.3036 -3.1382 41 1 11.0091 -7.9183 -2.1864 42 1 8.0894 -8.7271 -2.5654 43 1 8.8998 -7.3423 -3.3364 44 1 6.9941 -7.2231 -3.3734 45 1 1.5908 -2.9191 -2.0947 46 1 1.3710 -4.3730 -1.0910 47 1 0.2037 -2.3409 -0.1601 48 1 1.4169 -3.0209 0.9534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:31 Heat of formation + Delta-G solvation = 26.114905 kcal Electronic energy + Delta-G solvation = -26367.931327 eV Core-core repulsion = 22842.155448 eV Total energy + Delta-G solvation = -3525.775880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73390 -40.09123 -38.86467 -36.27144 -35.06860 -33.38774 -33.17057 -31.90550 -31.53654 -29.93331 -28.35227 -26.19528 -25.49060 -24.07565 -23.58978 -23.01541 -22.62193 -21.49754 -20.97283 -18.91143 -18.21107 -17.81452 -17.60641 -16.42450 -16.29540 -16.13726 -15.92717 -15.75042 -15.47828 -15.25299 -15.10657 -14.81958 -14.50718 -14.34439 -14.15986 -14.03917 -13.93409 -13.51603 -13.23549 -13.07323 -12.82178 -12.74994 -12.53180 -12.32989 -12.29325 -11.97089 -11.88635 -11.85373 -11.59317 -11.35894 -10.95212 -10.74397 -10.59577 -10.54432 -10.44046 -9.77561 -9.37360 -8.18617 -8.15975 -6.11548 0.30736 0.48173 1.37544 1.41450 1.49280 2.24325 2.40171 2.65601 2.97721 3.11577 3.33927 3.66257 3.88125 3.96521 3.99403 4.02713 4.07737 4.17164 4.18981 4.20997 4.30531 4.41127 4.51717 4.62289 4.64308 4.70496 4.78392 4.80028 4.87233 4.95496 4.95890 5.01426 5.04898 5.06515 5.15818 5.17174 5.24622 5.27363 5.44913 5.57554 5.63146 5.75080 5.82175 5.89805 6.03244 6.10673 6.18732 6.33403 6.44266 6.74032 6.95087 7.25373 7.46579 8.93036 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.030142 B = 0.002490 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.706244 B =11242.919591 C =11534.883387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.022 3.978 3 Si 0.938 3.062 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.498 4.498 8 C -0.015 4.015 9 C -0.111 4.111 10 C 0.180 3.820 11 H 0.073 0.927 12 N -0.721 5.721 13 C 0.374 3.626 14 C -0.223 4.223 15 C -0.049 4.049 16 C -0.012 4.012 17 N -0.479 5.479 18 C 0.018 3.982 19 C 0.064 3.936 20 N -0.691 5.691 21 C 0.064 3.936 22 C 0.010 3.990 23 C 0.094 3.906 24 N -0.551 5.551 25 C -0.103 4.103 26 C 0.010 3.990 27 H 0.262 0.738 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.400 0.600 33 H 0.136 0.864 34 H 0.151 0.849 35 H 0.087 0.913 36 H 0.036 0.964 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.346 0.654 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.170 0.830 45 H 0.045 0.955 46 H 0.053 0.947 47 H 0.029 0.971 48 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.504 -17.912 -2.256 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.517 4.517 8 C -0.054 4.054 9 C -0.150 4.150 10 C 0.075 3.925 11 H 0.091 0.909 12 N -0.352 5.352 13 C 0.138 3.862 14 C -0.248 4.248 15 C -0.077 4.077 16 C -0.113 4.113 17 N -0.197 5.197 18 C -0.109 4.109 19 C -0.066 4.066 20 N -0.320 5.320 21 C -0.066 4.066 22 C -0.119 4.119 23 C -0.066 4.066 24 N -0.269 5.269 25 C -0.141 4.141 26 C -0.028 4.028 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.235 0.765 33 H 0.154 0.846 34 H 0.168 0.832 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.164 0.836 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.187 0.813 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.047 0.953 48 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 19.959 -17.479 -2.701 26.668 hybrid contribution -1.684 1.118 0.109 2.024 sum 18.275 -16.361 -2.593 24.665 Atomic orbital electron populations 1.69962 1.07620 1.27428 1.52014 1.25591 0.95326 1.01734 0.94975 0.85843 0.79366 0.79847 0.78460 1.20312 1.21977 1.17617 1.20633 0.91178 0.91776 1.48137 1.19746 0.94629 0.95943 0.95036 1.21906 0.98029 0.95653 0.99413 1.20690 0.93324 0.88311 0.90135 0.90862 1.44864 1.22067 1.47101 1.21177 1.18576 0.87523 0.90121 0.89946 1.21523 0.98245 1.06501 0.98566 1.21164 0.94292 0.93141 0.99057 1.19698 0.92657 1.01843 0.97072 1.59494 1.28536 1.26863 1.04816 1.23065 0.99457 0.96129 0.92271 1.22135 0.94016 0.96451 0.94019 1.60723 1.55315 1.12872 1.03076 1.22130 0.94610 0.96414 0.93407 1.23088 0.99447 0.96320 0.93049 1.22860 0.88868 0.97262 0.97572 1.67076 1.16272 1.11598 1.31957 1.21706 0.93648 0.98588 1.00172 1.19298 0.97144 0.93361 0.92981 0.92851 0.95130 0.95449 0.93010 0.93818 0.76529 0.84626 0.83165 0.89493 0.94560 0.88398 0.90407 0.83626 0.88146 0.90575 0.93533 0.89353 0.81309 0.93621 0.92878 0.95268 0.97578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.95 12.73 21.45 0.27 -53.68 16 2 C 0.02 1.19 5.46 84.66 0.46 1.65 16 3 Si 0.94 42.75 27.27 68.60 1.87 44.62 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.25 -10.76 6.46 99.48 0.64 -10.12 16 7 C -0.50 -25.37 5.51 -16.17 -0.09 -25.46 16 8 C -0.02 -0.67 5.60 30.11 0.17 -0.50 16 9 C -0.11 -4.23 5.41 30.66 0.17 -4.06 16 10 C 0.18 6.42 2.04 44.96 0.09 6.51 16 11 H 0.07 2.59 6.44 -2.39 -0.02 2.58 16 12 N -0.72 -23.39 5.25 -324.50 -1.70 -25.09 16 13 C 0.37 11.79 7.63 132.97 1.01 12.80 16 14 C -0.22 -6.35 8.81 22.48 0.20 -6.15 16 15 C -0.05 -1.17 9.32 22.56 0.21 -0.96 16 16 C -0.01 -0.26 5.65 38.21 0.22 -0.05 16 17 N -0.48 -8.55 4.77 -694.16 -3.31 -11.86 16 18 C 0.02 0.27 5.38 86.31 0.46 0.73 16 19 C 0.06 0.73 6.72 86.31 0.58 1.31 16 20 N -0.69 -7.91 6.91 -513.45 -3.55 -11.46 16 21 C 0.06 0.72 6.72 86.31 0.58 1.30 16 22 C 0.01 0.13 4.30 86.31 0.37 0.50 16 23 C 0.09 2.34 10.00 84.76 0.85 3.19 16 24 N -0.55 -16.80 10.39 -192.61 -2.00 -18.80 16 25 C -0.10 -4.10 5.40 30.67 0.17 -3.93 16 26 C 0.01 0.49 5.97 30.12 0.18 0.67 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.03 1.32 4.78 -2.39 -0.01 1.31 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.81 7.70 -2.39 -0.02 1.79 16 31 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.40 12.59 8.73 -92.71 -0.81 11.78 16 33 H 0.14 3.87 6.12 -2.91 -0.02 3.85 16 34 H 0.15 2.91 7.26 -2.91 -0.02 2.89 16 35 H 0.09 1.23 6.88 -2.39 -0.02 1.22 16 36 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.35 3.25 8.89 -89.69 -0.80 2.45 16 40 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 42 H 0.05 0.62 7.61 -2.39 -0.02 0.60 16 43 H 0.09 1.22 7.18 -2.39 -0.02 1.20 16 44 H 0.17 3.33 5.82 -2.91 -0.02 3.31 16 45 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.03 1.58 7.07 -2.39 -0.02 1.56 16 48 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -60.49 362.13 -3.48 -63.97 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.68 Total: 24.75 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 5.63 Total: -12.45 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -10.29 Total: -120.89 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.87 Total: 44.62 kcal Total: -60.49 -3.48 -63.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.084 kcal (2) G-P(sol) polarization free energy of solvation -60.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds