Wall clock time and date at job start Tue Mar 31 2020 11:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99845 * 2 1 4 4 H 1.48493 * 109.47147 * 270.00240 * 3 2 1 5 5 H 1.48501 * 109.46894 * 30.00151 * 3 2 1 6 6 H 1.48502 * 109.47028 * 150.00046 * 3 2 1 7 7 C 1.37875 * 120.00331 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.85223 * 180.02562 * 7 2 1 9 9 C 1.53225 * 108.54171 * 231.32611 * 8 7 2 10 10 C 1.52959 * 109.40286 * 305.37610 * 9 8 7 11 11 H 1.09002 * 109.41303 * 303.48989 * 10 9 8 12 12 N 1.46500 * 109.35396 * 183.66617 * 10 9 8 13 13 C 1.38402 * 120.00075 * 84.82417 * 12 10 9 14 14 N 1.32509 * 119.21973 * 359.73002 * 13 12 10 15 15 C 1.32254 * 120.74372 * 179.71998 * 14 13 12 16 16 C 1.38635 * 119.19643 * 0.53966 * 15 14 13 17 17 C 1.38580 * 118.55616 * 359.73376 * 16 15 14 18 18 C 1.50701 * 120.40113 * 180.02562 * 17 16 15 19 19 C 1.53111 * 109.52378 * 34.85378 * 18 17 16 20 20 C 1.53037 * 109.27678 * 182.50582 * 19 18 17 21 21 N 1.46856 * 109.57915 * 59.07908 * 20 19 18 22 22 C 1.46843 * 111.19476 * 298.29589 * 21 20 19 23 23 C 1.53039 * 109.52817 * 61.74106 * 22 21 20 24 24 N 1.32296 * 119.20047 * 359.97438 * 17 16 15 25 25 C 1.52956 * 109.81702 * 63.59520 * 10 9 8 26 26 C 1.51269 * 120.84916 * 0.02562 * 7 2 1 27 27 H 0.97008 * 120.00001 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.62958 * 351.04667 * 8 7 2 29 29 H 1.09008 * 109.62656 * 111.61037 * 8 7 2 30 30 H 1.09000 * 109.48726 * 185.39513 * 9 8 7 31 31 H 1.09003 * 109.48069 * 65.35037 * 9 8 7 32 32 H 0.97002 * 119.99874 * 264.81912 * 12 10 9 33 33 H 1.07997 * 120.40643 * 180.29423 * 15 14 13 34 34 H 1.07996 * 120.72615 * 179.75318 * 16 15 14 35 35 H 1.08996 * 109.51897 * 154.98091 * 18 17 16 36 36 H 1.09011 * 109.50144 * 302.37971 * 19 18 17 37 37 H 1.08996 * 109.50885 * 62.49501 * 19 18 17 38 38 H 1.09000 * 109.41237 * 299.06371 * 20 19 18 39 39 H 1.08999 * 109.45997 * 179.12525 * 20 19 18 40 40 H 1.00890 * 111.00300 * 174.19336 * 21 20 19 41 41 H 1.09004 * 109.46246 * 301.72081 * 22 21 20 42 42 H 1.09004 * 109.45239 * 181.74811 * 22 21 20 43 43 H 1.09002 * 109.50329 * 180.87957 * 23 22 21 44 44 H 1.08998 * 109.53520 * 60.77606 * 23 22 21 45 45 H 1.08997 * 109.48335 * 56.38114 * 25 10 9 46 46 H 1.09007 * 109.48184 * 176.42166 * 25 10 9 47 47 H 1.09004 * 109.62594 * 8.95559 * 26 7 2 48 48 H 1.08998 * 109.78099 * 248.48535 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 6 3.5170 -1.2164 0.0000 9 6 3.9912 -2.1305 -1.1346 10 6 3.3404 -3.5066 -0.9841 11 1 3.5739 -3.9122 0.0003 12 7 3.8610 -4.4054 -2.0172 13 6 5.0482 -5.0856 -1.8084 14 7 5.7039 -4.9082 -0.6707 15 6 6.8381 -5.5471 -0.4374 16 6 7.3444 -6.4014 -1.4047 17 6 6.6361 -6.5595 -2.5853 18 6 7.1480 -7.4782 -3.6646 19 6 7.8412 -8.6838 -3.0242 20 6 8.4133 -9.5809 -4.1242 21 7 9.3693 -8.8161 -4.9354 22 6 8.7144 -7.6812 -5.5983 23 6 8.1528 -6.7265 -4.5422 24 7 5.5045 -5.8950 -2.7529 25 6 1.8235 -3.3821 -1.1359 26 6 1.2678 -2.5151 -0.0017 27 1 -0.4850 0.8401 0.0004 28 1 3.8983 -0.2077 -0.1589 29 1 3.8772 -1.6006 0.9545 30 1 5.0753 -2.2342 -1.0890 31 1 3.7072 -1.6970 -2.0935 32 1 3.3737 -4.5239 -2.8475 33 1 7.3657 -5.4020 0.4937 34 1 8.2706 -6.9325 -1.2418 35 1 6.3140 -7.8206 -4.2772 36 1 8.6501 -8.3386 -2.3800 37 1 7.1194 -9.2469 -2.4327 38 1 7.6023 -9.9377 -4.7590 39 1 8.9211 -10.4322 -3.6710 40 1 9.8301 -9.4108 -5.6076 41 1 7.9019 -8.0469 -6.2262 42 1 9.4410 -7.1529 -6.2156 43 1 7.6532 -5.8922 -5.0347 44 1 8.9662 -6.3492 -3.9225 45 1 1.5908 -2.9189 -2.0947 46 1 1.3711 -4.3729 -1.0912 47 1 0.2037 -2.3408 -0.1618 48 1 1.4163 -3.0211 0.9522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:02 Heat of formation + Delta-G solvation = 33.697680 kcal Electronic energy + Delta-G solvation = -26335.339683 eV Core-core repulsion = 22809.892617 eV Total energy + Delta-G solvation = -3525.447066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.92139 -38.87321 -37.45810 -34.73434 -33.97672 -32.50604 -31.42364 -31.15538 -29.89087 -29.40773 -26.98344 -25.33086 -23.71818 -23.06544 -22.55145 -21.51411 -21.22015 -19.82911 -19.42789 -17.67523 -17.17510 -16.74171 -16.01526 -15.56982 -14.99345 -14.91539 -14.60424 -14.54174 -14.41226 -14.06310 -13.73959 -13.51081 -13.27219 -13.20381 -12.75561 -12.56546 -12.33517 -12.08069 -11.70889 -11.54928 -11.37257 -11.12919 -11.03511 -10.92862 -10.85316 -10.71038 -10.51560 -10.36359 -10.14134 -10.02121 -9.86306 -9.46571 -8.97502 -8.86299 -8.80076 -8.66056 -8.46530 -7.64269 -6.10199 -4.00607 1.36084 1.45076 3.22615 3.29349 3.36486 3.38979 3.83637 4.09005 4.12966 4.39132 4.42218 4.63163 4.67113 4.83727 4.88230 5.03047 5.11490 5.18903 5.25670 5.31767 5.32882 5.39269 5.48332 5.54242 5.63087 5.73236 5.74736 5.87174 5.90537 5.96364 6.11929 6.24642 6.40333 6.50621 6.62834 6.63782 6.75290 6.90908 6.91750 6.97287 7.02750 7.11655 7.28058 7.43881 7.50173 7.66769 7.72794 7.77161 7.92104 8.38370 8.67607 8.96604 9.55064 10.99368 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.002512 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.090794 B =11145.073191 C =11264.491297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.488 4.488 8 C -0.012 4.012 9 C -0.111 4.111 10 C 0.169 3.831 11 H 0.082 0.918 12 N -0.689 5.689 13 C 0.572 3.428 14 N -0.563 5.563 15 C 0.193 3.807 16 C -0.305 4.305 17 C 0.225 3.775 18 C -0.038 4.038 19 C -0.110 4.110 20 C 0.058 3.942 21 N -0.691 5.691 22 C 0.059 3.941 23 C -0.104 4.104 24 N -0.580 5.580 25 C -0.115 4.115 26 C 0.015 3.985 27 H 0.264 0.736 28 H 0.030 0.970 29 H 0.020 0.980 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.406 0.594 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.342 0.658 41 H 0.032 0.968 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.035 0.965 47 H 0.060 0.940 48 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.902 -17.409 -8.344 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.507 4.507 8 C -0.050 4.050 9 C -0.151 4.151 10 C 0.066 3.934 11 H 0.100 0.900 12 N -0.322 5.322 13 C 0.215 3.785 14 N -0.286 5.286 15 C 0.024 3.976 16 C -0.331 4.331 17 C 0.076 3.924 18 C -0.058 4.058 19 C -0.149 4.149 20 C -0.071 4.071 21 N -0.323 5.323 22 C -0.070 4.070 23 C -0.143 4.143 24 N -0.303 5.303 25 C -0.154 4.154 26 C -0.023 4.023 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.242 0.758 33 H 0.179 0.821 34 H 0.156 0.844 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.160 0.840 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.054 0.946 47 H 0.079 0.921 48 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 15.937 -16.241 -7.808 24.057 hybrid contribution 0.496 0.029 -0.966 1.087 sum 16.433 -16.212 -8.774 24.695 Atomic orbital electron populations 1.69834 1.06141 1.26921 1.49909 1.24840 0.94713 0.98576 0.94555 0.86661 0.80006 0.83295 0.78414 1.20492 1.21654 1.19149 1.20048 0.89414 0.91421 1.49828 1.19707 0.96482 0.94930 0.93871 1.21920 0.97232 0.95288 1.00632 1.21074 0.94013 0.88503 0.89830 0.90017 1.44907 1.19818 1.45730 1.21697 1.19440 0.87601 0.86464 0.84977 1.68038 1.10549 1.28182 1.21821 1.22919 0.89400 0.87592 0.97661 1.22236 1.05188 1.08132 0.97564 1.21102 0.87940 0.90533 0.92868 1.20127 0.98018 0.93480 0.94153 1.21698 1.00097 0.95343 0.97715 1.21918 0.94166 0.95750 0.95259 1.60276 1.31388 1.12281 1.28307 1.21918 0.97336 0.92471 0.95272 1.21574 0.98048 0.97594 0.97092 1.67700 1.16477 1.13267 1.32892 1.21954 0.92396 0.98642 1.02412 1.19319 0.98694 0.92733 0.91588 0.92607 0.95196 0.96163 0.94563 0.93333 0.75752 0.82095 0.84411 0.89547 0.90236 0.91175 0.95091 0.90483 0.83984 0.94981 0.90494 0.91083 0.90716 0.92741 0.94628 0.92100 0.97537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 12.73 55.43 0.71 -24.82 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.89 21.29 27.27 -169.99 -4.64 16.65 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.23 6.46 56.52 0.37 -5.87 16 7 C -0.49 -12.84 5.51 -98.93 -0.55 -13.38 16 8 C -0.01 -0.28 5.59 -27.49 -0.15 -0.43 16 9 C -0.11 -2.37 5.51 -26.64 -0.15 -2.52 16 10 C 0.17 3.37 2.34 -67.97 -0.16 3.21 16 11 H 0.08 1.74 7.51 -51.93 -0.39 1.35 16 12 N -0.69 -12.23 5.21 -55.83 -0.29 -12.52 16 13 C 0.57 10.04 8.40 -322.80 -2.71 7.33 16 14 N -0.56 -9.69 9.20 -13.93 -0.13 -9.82 16 15 C 0.19 2.59 11.30 -17.22 -0.19 2.40 16 16 C -0.30 -3.62 9.25 -39.31 -0.36 -3.98 16 17 C 0.22 2.93 5.83 -82.27 -0.48 2.46 16 18 C -0.04 -0.38 2.60 -91.65 -0.24 -0.62 16 19 C -0.11 -0.88 4.89 -26.65 -0.13 -1.01 16 20 C 0.06 0.39 6.55 -3.83 -0.03 0.37 16 21 N -0.69 -4.76 6.85 -113.81 -0.78 -5.54 16 22 C 0.06 0.44 6.55 -3.84 -0.03 0.41 16 23 C -0.10 -0.96 5.36 -26.65 -0.14 -1.10 16 24 N -0.58 -9.27 10.40 -10.15 -0.11 -9.37 16 25 C -0.12 -2.42 5.40 -26.65 -0.14 -2.56 16 26 C 0.01 0.36 5.97 -27.50 -0.16 0.20 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.03 0.71 4.78 -51.93 -0.25 0.46 16 29 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.41 6.63 8.72 -40.82 -0.36 6.28 16 33 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.14 1.25 6.38 -52.49 -0.33 0.92 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.64 6.45 -51.92 -0.34 0.30 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.34 1.75 8.90 -39.30 -0.35 1.40 16 41 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 47 H 0.06 1.64 7.07 -51.93 -0.37 1.27 16 48 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -29.83 369.02 -13.29 -43.12 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.89 Total: 4.03 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -5.72 Total: -7.28 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.60 Total: -62.08 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.64 Total: 16.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.83 -13.29 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.820 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds