Wall clock time and date at job start Tue Mar 31 2020 11:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99845 * 2 1 4 4 H 1.48493 * 109.47147 * 270.00240 * 3 2 1 5 5 H 1.48501 * 109.46894 * 30.00151 * 3 2 1 6 6 H 1.48502 * 109.47028 * 150.00046 * 3 2 1 7 7 C 1.37875 * 120.00331 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.85223 * 180.02562 * 7 2 1 9 9 C 1.53225 * 108.54171 * 231.32611 * 8 7 2 10 10 C 1.52959 * 109.40286 * 305.37610 * 9 8 7 11 11 H 1.09002 * 109.41303 * 303.48989 * 10 9 8 12 12 N 1.46500 * 109.35396 * 183.66617 * 10 9 8 13 13 C 1.38402 * 120.00075 * 84.82417 * 12 10 9 14 14 N 1.32509 * 119.21973 * 359.73002 * 13 12 10 15 15 C 1.32254 * 120.74372 * 179.71998 * 14 13 12 16 16 C 1.38635 * 119.19643 * 0.53966 * 15 14 13 17 17 C 1.38580 * 118.55616 * 359.73376 * 16 15 14 18 18 C 1.50701 * 120.40113 * 180.02562 * 17 16 15 19 19 C 1.53111 * 109.52378 * 34.85378 * 18 17 16 20 20 C 1.53037 * 109.27678 * 182.50582 * 19 18 17 21 21 N 1.46856 * 109.57915 * 59.07908 * 20 19 18 22 22 C 1.46843 * 111.19476 * 298.29589 * 21 20 19 23 23 C 1.53039 * 109.52817 * 61.74106 * 22 21 20 24 24 N 1.32296 * 119.20047 * 359.97438 * 17 16 15 25 25 C 1.52956 * 109.81702 * 63.59520 * 10 9 8 26 26 C 1.51269 * 120.84916 * 0.02562 * 7 2 1 27 27 H 0.97008 * 120.00001 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.62958 * 351.04667 * 8 7 2 29 29 H 1.09008 * 109.62656 * 111.61037 * 8 7 2 30 30 H 1.09000 * 109.48726 * 185.39513 * 9 8 7 31 31 H 1.09003 * 109.48069 * 65.35037 * 9 8 7 32 32 H 0.97002 * 119.99874 * 264.81912 * 12 10 9 33 33 H 1.07997 * 120.40643 * 180.29423 * 15 14 13 34 34 H 1.07996 * 120.72615 * 179.75318 * 16 15 14 35 35 H 1.08996 * 109.51897 * 154.98091 * 18 17 16 36 36 H 1.09011 * 109.50144 * 302.37971 * 19 18 17 37 37 H 1.08996 * 109.50885 * 62.49501 * 19 18 17 38 38 H 1.09000 * 109.41237 * 299.06371 * 20 19 18 39 39 H 1.08999 * 109.45997 * 179.12525 * 20 19 18 40 40 H 1.00890 * 111.00300 * 174.19336 * 21 20 19 41 41 H 1.09004 * 109.46246 * 301.72081 * 22 21 20 42 42 H 1.09004 * 109.45239 * 181.74811 * 22 21 20 43 43 H 1.09002 * 109.50329 * 180.87957 * 23 22 21 44 44 H 1.08998 * 109.53520 * 60.77606 * 23 22 21 45 45 H 1.08997 * 109.48335 * 56.38114 * 25 10 9 46 46 H 1.09007 * 109.48184 * 176.42166 * 25 10 9 47 47 H 1.09004 * 109.62594 * 8.95559 * 26 7 2 48 48 H 1.08998 * 109.78099 * 248.48535 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 6 3.5170 -1.2164 0.0000 9 6 3.9912 -2.1305 -1.1346 10 6 3.3404 -3.5066 -0.9841 11 1 3.5739 -3.9122 0.0003 12 7 3.8610 -4.4054 -2.0172 13 6 5.0482 -5.0856 -1.8084 14 7 5.7039 -4.9082 -0.6707 15 6 6.8381 -5.5471 -0.4374 16 6 7.3444 -6.4014 -1.4047 17 6 6.6361 -6.5595 -2.5853 18 6 7.1480 -7.4782 -3.6646 19 6 7.8412 -8.6838 -3.0242 20 6 8.4133 -9.5809 -4.1242 21 7 9.3693 -8.8161 -4.9354 22 6 8.7144 -7.6812 -5.5983 23 6 8.1528 -6.7265 -4.5422 24 7 5.5045 -5.8950 -2.7529 25 6 1.8235 -3.3821 -1.1359 26 6 1.2678 -2.5151 -0.0017 27 1 -0.4850 0.8401 0.0004 28 1 3.8983 -0.2077 -0.1589 29 1 3.8772 -1.6006 0.9545 30 1 5.0753 -2.2342 -1.0890 31 1 3.7072 -1.6970 -2.0935 32 1 3.3737 -4.5239 -2.8475 33 1 7.3657 -5.4020 0.4937 34 1 8.2706 -6.9325 -1.2418 35 1 6.3140 -7.8206 -4.2772 36 1 8.6501 -8.3386 -2.3800 37 1 7.1194 -9.2469 -2.4327 38 1 7.6023 -9.9377 -4.7590 39 1 8.9211 -10.4322 -3.6710 40 1 9.8301 -9.4108 -5.6076 41 1 7.9019 -8.0469 -6.2262 42 1 9.4410 -7.1529 -6.2156 43 1 7.6532 -5.8922 -5.0347 44 1 8.9662 -6.3492 -3.9225 45 1 1.5908 -2.9189 -2.0947 46 1 1.3711 -4.3729 -1.0912 47 1 0.2037 -2.3408 -0.1618 48 1 1.4163 -3.0211 0.9522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:01 Heat of formation + Delta-G solvation = 16.566621 kcal Electronic energy + Delta-G solvation = -26336.082542 eV Core-core repulsion = 22809.892617 eV Total energy + Delta-G solvation = -3526.189924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.01972 -39.70791 -38.97460 -36.13130 -35.09023 -34.00125 -32.78868 -31.77433 -31.56643 -30.74050 -28.69873 -26.22375 -24.84751 -23.96771 -23.76014 -23.28691 -22.54259 -21.14255 -20.61013 -18.91458 -18.20966 -17.92126 -17.43429 -16.54777 -16.42199 -16.20304 -16.03831 -15.59191 -15.34962 -15.06129 -14.84740 -14.60770 -14.48167 -14.27936 -14.15504 -14.06168 -13.96187 -13.48933 -13.15784 -12.84006 -12.74760 -12.56390 -12.24669 -12.12714 -11.94618 -11.89274 -11.85915 -11.76161 -11.59057 -11.36328 -11.34136 -11.02520 -10.83018 -10.55480 -10.50718 -9.96431 -9.36708 -8.94127 -8.17772 -6.11606 0.29331 0.34558 1.37269 1.40843 1.49629 1.96579 2.40367 2.97767 3.10259 3.17117 3.33222 3.57264 3.72975 3.92932 4.01177 4.05504 4.14902 4.21666 4.27281 4.42930 4.47066 4.50978 4.52925 4.63633 4.68037 4.69476 4.78675 4.85852 4.92420 4.95325 4.96984 4.98971 5.06589 5.13025 5.17547 5.19258 5.23582 5.25162 5.39438 5.53884 5.56606 5.62416 5.74460 5.80511 5.99561 6.08710 6.26683 6.34378 6.54816 6.62698 6.93817 7.46153 7.48266 8.93007 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.002512 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.090794 B =11145.073191 C =11264.491297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.023 3.977 3 Si 0.939 3.061 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.255 1.255 7 C -0.498 4.498 8 C -0.012 4.012 9 C -0.101 4.101 10 C 0.189 3.811 11 H 0.069 0.931 12 N -0.693 5.693 13 C 0.554 3.446 14 N -0.594 5.594 15 C 0.182 3.818 16 C -0.286 4.286 17 C 0.212 3.788 18 C -0.034 4.034 19 C -0.106 4.106 20 C 0.060 3.940 21 N -0.695 5.695 22 C 0.063 3.937 23 C -0.101 4.101 24 N -0.595 5.595 25 C -0.103 4.103 26 C 0.012 3.988 27 H 0.263 0.737 28 H 0.030 0.970 29 H 0.020 0.980 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.411 0.589 33 H 0.194 0.806 34 H 0.172 0.828 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.030 0.970 39 H 0.093 0.907 40 H 0.354 0.646 41 H 0.032 0.968 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.032 0.968 48 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.935 -18.972 -8.851 28.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.180 1.180 7 C -0.518 4.518 8 C -0.050 4.050 9 C -0.140 4.140 10 C 0.084 3.916 11 H 0.087 0.913 12 N -0.328 5.328 13 C 0.197 3.803 14 N -0.318 5.318 15 C 0.015 3.985 16 C -0.311 4.311 17 C 0.065 3.935 18 C -0.054 4.054 19 C -0.144 4.144 20 C -0.070 4.070 21 N -0.328 5.328 22 C -0.066 4.066 23 C -0.139 4.139 24 N -0.319 5.319 25 C -0.142 4.142 26 C -0.026 4.026 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.248 0.752 33 H 0.211 0.789 34 H 0.189 0.811 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.111 0.889 40 H 0.174 0.826 41 H 0.050 0.950 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.051 0.949 48 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 19.038 -17.852 -8.324 27.394 hybrid contribution -0.350 0.371 -0.793 0.943 sum 18.688 -17.480 -9.117 27.164 Atomic orbital electron populations 1.69959 1.07542 1.27481 1.51902 1.25577 0.95363 1.01685 0.94861 0.85825 0.79257 0.79781 0.78565 1.20066 1.21696 1.17981 1.20597 0.90975 0.91869 1.48311 1.19699 0.94790 0.95657 0.94846 1.21770 0.97583 0.95537 0.99155 1.20588 0.92825 0.88177 0.89987 0.91290 1.44537 1.20657 1.46233 1.21392 1.19515 0.87745 0.87289 0.85762 1.68024 1.12129 1.29642 1.22011 1.23550 0.88527 0.87193 0.99225 1.22598 1.05597 1.06690 0.96241 1.21727 0.87229 0.90349 0.94215 1.20186 0.97996 0.93740 0.93442 1.21688 1.00025 0.94548 0.98144 1.21927 0.94318 0.95812 0.94900 1.60261 1.31306 1.12456 1.28733 1.21860 0.97616 0.92469 0.94677 1.21529 0.97527 0.97578 0.97306 1.67713 1.17820 1.13547 1.32777 1.21727 0.93421 0.98649 1.00384 1.19265 0.97206 0.93329 0.92830 0.92761 0.95122 0.96160 0.93927 0.93888 0.75221 0.78938 0.81086 0.90536 0.89729 0.91044 0.95148 0.88864 0.82628 0.94996 0.89479 0.92507 0.90962 0.93191 0.92876 0.94937 0.98016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 12.73 21.45 0.27 -54.42 16 2 C 0.02 1.30 5.46 84.65 0.46 1.76 16 3 Si 0.94 43.82 27.27 68.60 1.87 45.69 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.26 -11.34 6.46 99.48 0.64 -10.70 16 7 C -0.50 -26.49 5.51 -16.17 -0.09 -26.58 16 8 C -0.01 -0.55 5.59 30.10 0.17 -0.38 16 9 C -0.10 -4.25 5.51 30.66 0.17 -4.08 16 10 C 0.19 7.48 2.34 44.96 0.11 7.58 16 11 H 0.07 2.93 7.51 -2.39 -0.02 2.91 16 12 N -0.69 -24.38 5.21 -330.56 -1.72 -26.10 16 13 C 0.55 19.05 8.40 261.48 2.20 21.24 16 14 N -0.59 -19.75 9.20 -197.98 -1.82 -21.57 16 15 C 0.18 4.44 11.30 84.72 0.96 5.40 16 16 C -0.29 -5.98 9.25 22.45 0.21 -5.77 16 17 C 0.21 5.18 5.83 42.57 0.25 5.43 16 18 C -0.03 -0.62 2.60 -11.46 -0.03 -0.65 16 19 C -0.11 -1.40 4.89 30.64 0.15 -1.25 16 20 C 0.06 0.63 6.55 86.32 0.57 1.19 16 21 N -0.69 -7.57 6.85 -513.98 -3.52 -11.09 16 22 C 0.06 0.79 6.55 86.33 0.57 1.35 16 23 C -0.10 -1.68 5.36 30.65 0.16 -1.51 16 24 N -0.59 -18.52 10.40 -186.04 -1.93 -20.45 16 25 C -0.10 -4.35 5.40 30.64 0.17 -4.18 16 26 C 0.01 0.59 5.97 30.09 0.18 0.77 16 27 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 28 H 0.03 1.41 4.78 -2.39 -0.01 1.40 16 29 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.41 13.34 8.72 -92.71 -0.81 12.54 16 33 H 0.19 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.17 2.38 6.38 -2.91 -0.02 2.36 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.04 6.45 -2.38 -0.02 1.02 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.35 2.56 8.90 -89.70 -0.80 1.77 16 41 H 0.03 0.40 8.14 -2.38 -0.02 0.39 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 47 H 0.03 1.80 7.07 -2.38 -0.02 1.79 16 48 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -64.88 369.02 -1.37 -66.24 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.70 Total: 21.37 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 6.19 Total: 0.33 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -8.73 Total: -133.63 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.87 Total: 45.69 kcal Total: -64.88 -1.37 -66.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.809 kcal (2) G-P(sol) polarization free energy of solvation -64.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds