Wall clock time and date at job start Tue Mar 31 2020 11:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.52822 * 2 1 4 4 C 1.48537 * 110.99744 * 307.65250 * 3 2 1 5 5 C 1.54941 * 103.22368 * 159.71618 * 4 3 2 6 6 C 1.54593 * 102.92299 * 322.58376 * 5 4 3 7 7 C 1.47903 * 110.99614 * 65.04664 * 3 2 1 8 8 C 1.53128 * 109.52360 * 239.87430 * 2 1 3 9 9 C 1.53173 * 109.20374 * 297.69031 * 8 2 1 10 10 N 1.46841 * 109.55819 * 300.85586 * 9 8 2 11 11 C 1.38828 * 110.99928 * 185.83994 * 10 9 8 12 12 C 1.39968 * 119.96997 * 235.78922 * 11 10 9 13 13 N 1.32123 * 120.31433 * 179.97438 * 12 11 10 14 14 C 1.31935 * 120.27654 * 0.02562 * 13 12 11 15 15 C 1.40684 * 119.93200 * 0.02562 * 14 13 12 16 16 C 1.41262 * 120.15870 * 180.02562 * 15 14 13 17 17 H 1.08010 * 120.00177 * 7.35714 * 16 15 14 18 18 C 1.40057 * 120.00616 * 187.35410 * 16 15 14 19 19 N 1.30731 * 119.99346 * 352.99175 * 18 16 15 20 20 Si 1.86798 * 120.00394 * 172.99025 * 18 16 15 21 21 H 1.48498 * 109.46778 * 90.00031 * 20 18 16 22 22 H 1.48497 * 109.47077 * 210.00167 * 20 18 16 23 23 H 1.48496 * 109.47088 * 330.00181 * 20 18 16 24 24 N 1.32239 * 119.96772 * 55.52202 * 11 10 9 25 25 C 1.46849 * 111.19956 * 61.74622 * 10 9 8 26 26 C 1.53035 * 109.52391 * 298.26068 * 25 10 9 27 27 H 1.09004 * 109.47254 * 67.06662 * 1 2 3 28 28 H 1.08996 * 109.47304 * 307.06861 * 1 2 3 29 29 H 1.08999 * 109.47433 * 187.06730 * 1 2 3 30 30 H 1.08993 * 110.66298 * 278.15051 * 4 3 2 31 31 H 1.08998 * 110.66931 * 41.28324 * 4 3 2 32 32 H 1.09000 * 110.72039 * 204.22017 * 5 4 3 33 33 H 1.08999 * 110.72221 * 80.94503 * 5 4 3 34 34 H 1.08998 * 110.30874 * 263.04274 * 6 5 4 35 35 H 1.08998 * 110.39412 * 140.91980 * 6 5 4 36 36 H 1.09004 * 109.91723 * 333.50768 * 7 3 2 37 37 H 1.08995 * 109.92278 * 94.60662 * 7 3 2 38 38 H 1.08992 * 109.50084 * 57.69032 * 8 2 1 39 39 H 1.08995 * 109.50554 * 177.81152 * 8 2 1 40 40 H 1.09002 * 109.44312 * 180.83123 * 9 8 2 41 41 H 1.09001 * 109.43862 * 60.88150 * 9 8 2 42 42 H 1.07997 * 119.83924 * 359.96258 * 12 11 10 43 43 H 1.07998 * 120.03615 * 179.97438 * 14 13 12 44 44 H 0.97003 * 119.99523 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.46887 * 178.23726 * 25 10 9 46 46 H 1.09001 * 109.46072 * 58.27025 * 25 10 9 47 47 H 1.08999 * 109.50163 * 299.23740 * 26 25 10 48 48 H 1.09001 * 109.53666 * 179.13748 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0210 1.3845 0.0000 4 6 1.4005 2.1693 -1.0979 5 6 1.5957 3.6363 -0.6391 6 6 1.3829 3.5516 0.8898 7 6 1.6491 2.0787 1.2519 8 6 2.0417 -0.7244 -1.2483 9 6 1.5765 -2.1833 -1.2105 10 7 2.0924 -2.8324 0.0015 11 6 1.7992 -4.1894 0.0022 12 6 1.0971 -4.7525 1.0742 13 7 0.8140 -6.0430 1.0816 14 6 1.1912 -6.8125 0.0786 15 6 1.8984 -6.2583 -1.0040 16 6 2.3041 -7.0778 -2.0807 17 1 1.9713 -8.1040 -2.1337 18 6 3.1379 -6.5597 -3.0797 19 7 3.4296 -5.2854 -3.0917 20 14 3.8332 -7.6894 -4.3949 21 1 2.8989 -7.7402 -5.5481 22 1 5.1496 -7.1717 -4.8468 23 1 4.0037 -9.0543 -3.8354 24 7 2.1789 -4.9478 -1.0124 25 6 1.5766 -2.1820 1.2128 26 6 2.0416 -0.7244 1.2482 27 1 -0.3634 0.4005 -0.9465 28 1 -0.3634 0.6194 0.8199 29 1 -0.3634 -1.0198 0.1264 30 1 1.9182 1.9887 -2.0399 31 1 0.3405 1.9324 -1.1887 32 1 0.8499 4.2861 -1.0970 33 1 2.6034 3.9817 -0.8698 34 1 0.3590 3.8248 1.1449 35 1 2.0876 4.2019 1.4079 36 1 0.7482 1.6308 1.6714 37 1 2.4659 2.0117 1.9705 38 1 1.6457 -0.2375 -2.1394 39 1 3.1309 -0.6904 -1.2679 40 1 1.9512 -2.7065 -2.0902 41 1 0.4870 -2.2166 -1.2047 42 1 0.7855 -4.1291 1.8992 43 1 0.9581 -7.8670 0.0889 44 1 4.0074 -4.9266 -3.7833 45 1 1.9512 -2.7042 2.0931 46 1 0.4871 -2.2155 1.2071 47 1 3.1309 -0.6904 1.2678 48 1 1.6462 -0.2372 2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157658986.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:20 Heat of formation + Delta-G solvation = 66.177017 kcal Electronic energy + Delta-G solvation = -27545.588281 eV Core-core repulsion = 24021.549625 eV Total energy + Delta-G solvation = -3524.038656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55760 -39.15088 -37.39151 -34.38901 -33.88684 -31.79406 -30.88962 -30.20141 -28.86703 -28.64518 -27.40342 -25.89025 -23.70853 -23.39885 -21.76412 -21.61195 -20.55263 -20.40773 -18.10309 -17.49265 -16.85183 -16.17319 -15.87049 -15.43356 -15.02391 -14.83365 -14.69355 -14.31374 -14.05759 -13.84242 -13.61712 -13.18957 -13.18636 -12.63134 -12.23024 -12.14946 -11.99692 -11.72060 -11.64438 -11.50388 -11.43280 -11.37974 -11.35346 -11.11662 -10.99594 -10.86665 -10.68606 -10.60052 -10.49154 -10.22944 -9.92177 -9.81138 -9.44727 -9.39296 -8.39863 -8.32320 -7.47907 -7.03171 -6.46510 -4.69740 2.52801 2.97292 3.03169 3.06421 3.20674 3.85017 3.89502 4.29780 4.52011 4.52971 4.65307 4.78656 4.85893 4.98443 5.16618 5.20967 5.33451 5.44457 5.46643 5.53123 5.57975 5.62464 5.66638 5.70333 5.72578 5.79820 5.85395 5.87733 5.91816 5.94821 6.00188 6.04250 6.08186 6.16983 6.22085 6.26480 6.41378 6.47310 6.56372 6.64392 6.82377 6.90791 6.98847 7.06398 7.15130 7.49724 7.60731 7.92772 8.08461 8.48755 8.71093 9.30924 9.89104 10.13879 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.003475 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.751649 B = 8054.741139 C = 9161.204375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.102 3.898 3 N -0.503 5.503 4 C 0.027 3.973 5 C -0.123 4.123 6 C -0.131 4.131 7 C 0.030 3.970 8 C -0.097 4.097 9 C 0.072 3.928 10 N -0.468 5.468 11 C 0.292 3.708 12 C -0.162 4.162 13 N -0.416 5.416 14 C -0.088 4.088 15 C 0.227 3.773 16 C -0.412 4.412 17 H 0.091 0.909 18 C 0.066 3.934 19 N -0.703 5.703 20 Si 0.911 3.089 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.260 1.260 24 N -0.466 5.466 25 C 0.060 3.940 26 C -0.102 4.102 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.028 0.972 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.276 0.724 45 H 0.081 0.919 46 H 0.041 0.959 47 H 0.079 0.921 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 15.582 2.257 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.012 3.988 3 N -0.227 5.227 4 C -0.101 4.101 5 C -0.161 4.161 6 C -0.169 4.169 7 C -0.097 4.097 8 C -0.135 4.135 9 C -0.055 4.055 10 N -0.186 5.186 11 C 0.050 3.950 12 C -0.323 4.323 13 N -0.128 5.128 14 C -0.258 4.258 15 C 0.100 3.900 16 C -0.444 4.444 17 H 0.109 0.891 18 C -0.161 4.161 19 N -0.323 5.323 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.183 1.183 24 N -0.188 5.188 25 C -0.069 4.069 26 C -0.140 4.140 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.047 0.953 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.059 0.941 47 H 0.098 0.902 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.708 15.860 2.086 16.088 hybrid contribution -1.255 -0.529 -0.367 1.411 sum -2.963 15.332 1.719 15.710 Atomic orbital electron populations 1.22603 0.97359 1.02922 1.01555 1.21241 0.92109 0.88349 0.97077 1.65021 1.54380 1.01078 1.02192 1.23337 0.98316 0.92497 0.95931 1.22468 1.02038 0.96378 0.95241 1.22389 1.01346 0.96620 0.96540 1.22902 1.00037 0.93142 0.93660 1.21636 1.02425 0.94033 0.95412 1.22097 0.96488 0.93447 0.93472 1.58239 1.57111 1.00524 1.02753 1.20677 0.91273 0.89982 0.93115 1.22604 1.13164 0.93444 1.03050 1.67547 1.15096 1.04836 1.25298 1.23036 1.09588 0.99080 0.94122 1.19225 0.89520 0.88777 0.92489 1.19620 1.23527 0.98001 1.03245 0.89140 1.26137 0.95834 0.95424 0.98674 1.70095 1.22432 1.12537 1.27250 0.86263 0.78798 0.81114 0.80387 1.19300 1.19967 1.18338 1.69187 1.21777 1.04446 1.23340 1.22192 0.97591 0.93813 0.93270 1.21665 1.02430 0.93966 0.95928 0.92257 0.92597 0.91328 0.90094 0.93008 0.91451 0.90894 0.91892 0.91264 0.93291 0.90526 0.91960 0.90196 0.87834 0.95345 0.85664 0.85129 0.91239 0.90052 0.94064 0.90202 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.27 6.98 37.15 0.26 -2.01 16 2 C 0.10 1.32 0.43 -131.47 -0.06 1.27 16 3 N -0.50 -5.93 5.09 -214.70 -1.09 -7.03 16 4 C 0.03 0.28 5.50 -1.89 -0.01 0.27 16 5 C -0.12 -1.06 7.06 -24.87 -0.18 -1.23 16 6 C -0.13 -1.10 6.93 -25.37 -0.18 -1.27 16 7 C 0.03 0.31 5.15 -2.75 -0.01 0.29 16 8 C -0.10 -1.46 4.87 -26.58 -0.13 -1.59 16 9 C 0.07 1.34 5.09 -3.77 -0.02 1.32 16 10 N -0.47 -9.50 4.73 -172.98 -0.82 -10.32 16 11 C 0.29 7.09 6.46 -155.01 -1.00 6.09 16 12 C -0.16 -3.87 10.00 -16.78 -0.17 -4.04 16 13 N -0.42 -10.58 10.47 -12.11 -0.13 -10.71 16 14 C -0.09 -2.26 10.97 -16.58 -0.18 -2.44 16 15 C 0.23 6.16 6.54 -84.84 -0.55 5.61 16 16 C -0.41 -10.60 9.15 -37.75 -0.35 -10.94 16 17 H 0.09 2.14 7.86 -52.48 -0.41 1.73 16 18 C 0.07 1.62 5.49 -17.34 -0.10 1.52 16 19 N -0.70 -17.88 11.52 55.55 0.64 -17.24 16 20 Si 0.91 17.83 29.57 -169.99 -5.03 12.81 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 N -0.47 -12.58 7.36 -10.14 -0.07 -12.65 16 25 C 0.06 0.98 3.89 -3.83 -0.01 0.97 16 26 C -0.10 -1.39 4.62 -26.65 -0.12 -1.51 16 27 H 0.06 0.69 6.37 -51.93 -0.33 0.36 16 28 H 0.06 0.62 6.08 -51.93 -0.32 0.30 16 29 H 0.07 0.94 4.96 -51.93 -0.26 0.68 16 30 H 0.08 0.86 7.79 -51.93 -0.40 0.45 16 31 H 0.05 0.53 5.54 -51.93 -0.29 0.25 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.49 5.29 -51.93 -0.27 0.22 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.86 7.29 -51.93 -0.38 0.48 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.10 2.27 7.59 -51.93 -0.39 1.88 16 41 H 0.03 0.53 6.67 -51.93 -0.35 0.18 16 42 H 0.13 2.65 5.78 -52.49 -0.30 2.34 16 43 H 0.13 3.04 8.06 -52.49 -0.42 2.62 16 44 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 45 H 0.08 1.35 6.96 -51.93 -0.36 0.99 16 46 H 0.04 0.67 5.94 -51.93 -0.31 0.36 16 47 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.06 0.76 6.86 -51.93 -0.36 0.41 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -28.82 353.50 -11.23 -40.05 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.25 Total: 7.48 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -2.81 Total: -7.71 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -1.47 Total: -57.95 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.82 -11.23 -40.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157658986.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.226 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds