Wall clock time and date at job start Tue Mar 31 2020 11:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.52822 * 2 1 4 4 C 1.48537 * 110.99744 * 307.65250 * 3 2 1 5 5 C 1.54941 * 103.22368 * 159.71618 * 4 3 2 6 6 C 1.54593 * 102.92299 * 322.58376 * 5 4 3 7 7 C 1.47903 * 110.99614 * 65.04664 * 3 2 1 8 8 C 1.53128 * 109.52360 * 239.87430 * 2 1 3 9 9 C 1.53173 * 109.20374 * 297.69031 * 8 2 1 10 10 N 1.46841 * 109.55819 * 300.85586 * 9 8 2 11 11 C 1.38828 * 110.99928 * 185.83994 * 10 9 8 12 12 C 1.39968 * 119.96997 * 235.78922 * 11 10 9 13 13 N 1.32123 * 120.31433 * 179.97438 * 12 11 10 14 14 C 1.31935 * 120.27654 * 0.02562 * 13 12 11 15 15 C 1.40684 * 119.93200 * 0.02562 * 14 13 12 16 16 C 1.41262 * 120.15870 * 180.02562 * 15 14 13 17 17 H 1.08010 * 120.00177 * 7.35714 * 16 15 14 18 18 C 1.40057 * 120.00616 * 187.35410 * 16 15 14 19 19 N 1.30731 * 119.99346 * 352.99175 * 18 16 15 20 20 Si 1.86798 * 120.00394 * 172.99025 * 18 16 15 21 21 H 1.48498 * 109.46778 * 90.00031 * 20 18 16 22 22 H 1.48497 * 109.47077 * 210.00167 * 20 18 16 23 23 H 1.48496 * 109.47088 * 330.00181 * 20 18 16 24 24 N 1.32239 * 119.96772 * 55.52202 * 11 10 9 25 25 C 1.46849 * 111.19956 * 61.74622 * 10 9 8 26 26 C 1.53035 * 109.52391 * 298.26068 * 25 10 9 27 27 H 1.09004 * 109.47254 * 67.06662 * 1 2 3 28 28 H 1.08996 * 109.47304 * 307.06861 * 1 2 3 29 29 H 1.08999 * 109.47433 * 187.06730 * 1 2 3 30 30 H 1.08993 * 110.66298 * 278.15051 * 4 3 2 31 31 H 1.08998 * 110.66931 * 41.28324 * 4 3 2 32 32 H 1.09000 * 110.72039 * 204.22017 * 5 4 3 33 33 H 1.08999 * 110.72221 * 80.94503 * 5 4 3 34 34 H 1.08998 * 110.30874 * 263.04274 * 6 5 4 35 35 H 1.08998 * 110.39412 * 140.91980 * 6 5 4 36 36 H 1.09004 * 109.91723 * 333.50768 * 7 3 2 37 37 H 1.08995 * 109.92278 * 94.60662 * 7 3 2 38 38 H 1.08992 * 109.50084 * 57.69032 * 8 2 1 39 39 H 1.08995 * 109.50554 * 177.81152 * 8 2 1 40 40 H 1.09002 * 109.44312 * 180.83123 * 9 8 2 41 41 H 1.09001 * 109.43862 * 60.88150 * 9 8 2 42 42 H 1.07997 * 119.83924 * 359.96258 * 12 11 10 43 43 H 1.07998 * 120.03615 * 179.97438 * 14 13 12 44 44 H 0.97003 * 119.99523 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.46887 * 178.23726 * 25 10 9 46 46 H 1.09001 * 109.46072 * 58.27025 * 25 10 9 47 47 H 1.08999 * 109.50163 * 299.23740 * 26 25 10 48 48 H 1.09001 * 109.53666 * 179.13748 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0210 1.3845 0.0000 4 6 1.4005 2.1693 -1.0979 5 6 1.5957 3.6363 -0.6391 6 6 1.3829 3.5516 0.8898 7 6 1.6491 2.0787 1.2519 8 6 2.0417 -0.7244 -1.2483 9 6 1.5765 -2.1833 -1.2105 10 7 2.0924 -2.8324 0.0015 11 6 1.7992 -4.1894 0.0022 12 6 1.0971 -4.7525 1.0742 13 7 0.8140 -6.0430 1.0816 14 6 1.1912 -6.8125 0.0786 15 6 1.8984 -6.2583 -1.0040 16 6 2.3041 -7.0778 -2.0807 17 1 1.9713 -8.1040 -2.1337 18 6 3.1379 -6.5597 -3.0797 19 7 3.4296 -5.2854 -3.0917 20 14 3.8332 -7.6894 -4.3949 21 1 2.8989 -7.7402 -5.5481 22 1 5.1496 -7.1717 -4.8468 23 1 4.0037 -9.0543 -3.8354 24 7 2.1789 -4.9478 -1.0124 25 6 1.5766 -2.1820 1.2128 26 6 2.0416 -0.7244 1.2482 27 1 -0.3634 0.4005 -0.9465 28 1 -0.3634 0.6194 0.8199 29 1 -0.3634 -1.0198 0.1264 30 1 1.9182 1.9887 -2.0399 31 1 0.3405 1.9324 -1.1887 32 1 0.8499 4.2861 -1.0970 33 1 2.6034 3.9817 -0.8698 34 1 0.3590 3.8248 1.1449 35 1 2.0876 4.2019 1.4079 36 1 0.7482 1.6308 1.6714 37 1 2.4659 2.0117 1.9705 38 1 1.6457 -0.2375 -2.1394 39 1 3.1309 -0.6904 -1.2679 40 1 1.9512 -2.7065 -2.0902 41 1 0.4870 -2.2166 -1.2047 42 1 0.7855 -4.1291 1.8992 43 1 0.9581 -7.8670 0.0889 44 1 4.0074 -4.9266 -3.7833 45 1 1.9512 -2.7042 2.0931 46 1 0.4871 -2.2155 1.2071 47 1 3.1309 -0.6904 1.2678 48 1 1.6462 -0.2372 2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157658986.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:19 Heat of formation + Delta-G solvation = 47.883259 kcal Electronic energy + Delta-G solvation = -27546.381558 eV Core-core repulsion = 24021.549625 eV Total energy + Delta-G solvation = -3524.831933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.84466 -40.71370 -38.73898 -35.97356 -35.45074 -33.61314 -32.22417 -31.67183 -29.95187 -29.70745 -28.59006 -27.73224 -25.02520 -24.93589 -23.37716 -22.99637 -21.81650 -21.34700 -19.58047 -19.01050 -18.26353 -17.60956 -17.18908 -16.82077 -16.69704 -16.44997 -16.02935 -15.51041 -15.21077 -14.97732 -14.89166 -14.72238 -14.58675 -13.94778 -13.51983 -13.42693 -13.14333 -13.08383 -13.01278 -12.96910 -12.79757 -12.58169 -12.56140 -12.29018 -12.13186 -12.11074 -12.05536 -11.86766 -11.67498 -11.53183 -11.38344 -11.30398 -11.14429 -11.09326 -10.22791 -9.40004 -9.22230 -8.82029 -8.32906 -6.66818 0.63876 1.12088 1.41582 1.52573 1.57854 2.19588 2.66590 2.81336 2.99228 3.55598 3.74905 3.77571 3.84296 3.98669 4.01379 4.06551 4.17794 4.20158 4.22849 4.27345 4.36214 4.39766 4.49438 4.51927 4.62867 4.66917 4.68726 4.74477 4.78162 4.83795 4.90916 4.93533 4.99781 5.04038 5.08537 5.12034 5.14262 5.17664 5.20003 5.22561 5.24397 5.40005 5.43261 5.64031 5.94196 6.06788 6.12192 6.19289 6.23503 6.59164 6.78070 7.35757 7.96130 8.31441 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.003475 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.751649 B = 8054.741139 C = 9161.204375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 N -0.515 5.515 4 C 0.023 3.977 5 C -0.119 4.119 6 C -0.127 4.127 7 C 0.027 3.973 8 C -0.085 4.085 9 C 0.082 3.918 10 N -0.477 5.477 11 C 0.285 3.715 12 C -0.169 4.169 13 N -0.425 5.425 14 C -0.110 4.110 15 C 0.196 3.804 16 C -0.435 4.435 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.737 5.737 20 Si 0.993 3.007 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.253 1.253 24 N -0.496 5.496 25 C 0.059 3.941 26 C -0.092 4.092 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.028 0.972 42 H 0.153 0.847 43 H 0.146 0.854 44 H 0.283 0.717 45 H 0.079 0.921 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 17.219 2.315 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.020 3.980 3 N -0.239 5.239 4 C -0.105 4.105 5 C -0.157 4.157 6 C -0.165 4.165 7 C -0.100 4.100 8 C -0.124 4.124 9 C -0.044 4.044 10 N -0.195 5.195 11 C 0.042 3.958 12 C -0.330 4.330 13 N -0.137 5.137 14 C -0.280 4.280 15 C 0.069 3.931 16 C -0.467 4.467 17 H 0.121 0.879 18 C -0.202 4.202 19 N -0.357 5.357 20 Si 0.812 3.188 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.176 1.176 24 N -0.218 5.218 25 C -0.068 4.068 26 C -0.131 4.131 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.170 0.830 43 H 0.163 0.837 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.015 17.513 2.166 17.762 hybrid contribution -1.155 -0.941 -0.347 1.530 sum -3.170 16.573 1.819 16.971 Atomic orbital electron populations 1.22532 0.96376 1.02242 1.02666 1.21043 0.92657 0.89138 0.95194 1.64973 1.54882 1.00437 1.03603 1.23400 0.98245 0.93546 0.95278 1.22457 1.02454 0.95261 0.95524 1.22385 1.02350 0.95464 0.96271 1.22976 1.00142 0.94161 0.92738 1.21509 1.01304 0.91936 0.97602 1.21938 0.96131 0.94994 0.91386 1.58280 1.57395 0.99075 1.04745 1.21092 0.90500 0.91590 0.92580 1.23050 1.12789 0.93367 1.03787 1.67562 1.15321 1.05506 1.25261 1.23234 1.10485 0.99932 0.94304 1.19687 0.90382 0.89399 0.93614 1.20060 1.24223 0.98635 1.03735 0.87904 1.27109 0.95521 0.96938 1.00597 1.70197 1.22766 1.14489 1.28248 0.85038 0.77984 0.78743 0.77007 1.18371 1.19424 1.17633 1.69184 1.23010 1.04835 1.24797 1.22311 0.97965 0.95210 0.91323 1.21603 1.01698 0.92199 0.97553 0.91645 0.90857 0.93001 0.90774 0.92663 0.89868 0.91169 0.90699 0.90414 0.92898 0.90593 0.90585 0.91883 0.91792 0.95392 0.82976 0.83679 0.90599 0.90246 0.93367 0.91434 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 6.98 71.98 0.50 -3.51 16 2 C 0.11 2.69 0.43 3.61 0.00 2.69 16 3 N -0.52 -11.11 5.09 -833.19 -4.24 -15.36 16 4 C 0.02 0.42 5.50 86.65 0.48 0.90 16 5 C -0.12 -1.71 7.06 31.80 0.22 -1.49 16 6 C -0.13 -1.72 6.93 31.47 0.22 -1.50 16 7 C 0.03 0.47 5.15 86.45 0.45 0.92 16 8 C -0.09 -2.57 4.87 30.69 0.15 -2.42 16 9 C 0.08 3.17 5.09 86.37 0.44 3.61 16 10 N -0.48 -19.75 4.73 -701.20 -3.31 -23.07 16 11 C 0.29 14.26 6.46 133.37 0.86 15.12 16 12 C -0.17 -8.16 10.00 85.07 0.85 -7.31 16 13 N -0.42 -21.92 10.47 -192.23 -2.01 -23.93 16 14 C -0.11 -5.83 10.97 85.28 0.94 -4.89 16 15 C 0.20 11.01 6.54 40.15 0.26 11.28 16 16 C -0.43 -22.91 9.15 23.46 0.21 -22.69 16 17 H 0.10 4.94 7.86 -2.91 -0.02 4.91 16 18 C 0.02 1.10 5.49 85.30 0.47 1.57 16 19 N -0.74 -38.54 11.52 21.84 0.25 -38.29 16 20 Si 0.99 36.52 29.57 68.60 2.03 38.54 16 21 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 22 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 23 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 24 N -0.50 -27.83 7.36 -186.00 -1.37 -29.20 16 25 C 0.06 1.91 3.89 86.32 0.34 2.25 16 26 C -0.09 -2.39 4.62 30.65 0.14 -2.25 16 27 H 0.06 1.38 6.37 -2.39 -0.02 1.37 16 28 H 0.07 1.39 6.08 -2.39 -0.01 1.37 16 29 H 0.05 1.34 4.96 -2.39 -0.01 1.33 16 30 H 0.07 1.46 7.79 -2.39 -0.02 1.44 16 31 H 0.06 0.99 5.54 -2.39 -0.01 0.98 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.88 5.29 -2.38 -0.01 0.87 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 2.07 7.29 -2.39 -0.02 2.05 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.06 2.97 7.59 -2.39 -0.02 2.95 16 41 H 0.03 1.06 6.67 -2.39 -0.02 1.05 16 42 H 0.15 6.34 5.78 -2.91 -0.02 6.33 16 43 H 0.15 6.94 8.06 -2.91 -0.02 6.91 16 44 H 0.28 13.40 8.29 -92.71 -0.77 12.63 16 45 H 0.08 2.58 6.96 -2.39 -0.02 2.56 16 46 H 0.05 1.51 5.94 -2.39 -0.01 1.49 16 47 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.09 1.91 6.86 -2.39 -0.02 1.89 16 Total: -1.00 -64.22 353.50 -1.16 -65.38 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.97 Total: 33.65 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 6.53 Total: -7.73 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -10.69 Total: -129.85 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.54 kcal Total: -64.22 -1.16 -65.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157658986.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.263 kcal (2) G-P(sol) polarization free energy of solvation -64.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds