Wall clock time and date at job start Tue Mar 31 2020 11:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38678 * 119.27444 * 2 1 4 4 C 1.38004 * 119.62275 * 179.69914 * 3 2 1 5 5 C 1.41009 * 118.28368 * 0.54466 * 4 3 2 6 6 C 1.41017 * 120.70644 * 179.73716 * 5 4 3 7 7 H 1.08003 * 119.99347 * 205.53623 * 6 5 4 8 8 C 1.39940 * 120.00154 * 25.52883 * 6 5 4 9 9 N 1.30863 * 120.00532 * 14.58086 * 8 6 5 10 10 Si 1.86807 * 119.99954 * 194.58386 * 8 6 5 11 11 H 1.48496 * 109.47142 * 180.02562 * 10 8 6 12 12 H 1.48503 * 109.46727 * 299.99935 * 10 8 6 13 13 H 1.48494 * 109.47375 * 59.99594 * 10 8 6 14 14 C 1.41710 * 118.58416 * 359.46175 * 5 4 3 15 15 N 1.38091 * 119.90430 * 180.29448 * 14 5 4 16 16 C 1.46495 * 119.99937 * 184.58197 * 15 14 5 17 17 C 1.53004 * 109.57722 * 58.26316 * 16 15 14 18 18 N 1.46900 * 109.47284 * 54.81800 * 17 16 15 19 19 C 1.53144 * 109.57636 * 178.51914 * 16 15 14 20 20 N 1.46915 * 109.36694 * 119.81865 * 19 16 15 21 21 C 1.46945 * 111.05127 * 297.99428 * 20 19 16 22 22 C 1.53126 * 109.35115 * 61.95876 * 21 20 19 23 23 C 1.53382 * 109.58278 * 297.86442 * 16 15 14 24 24 C 1.53394 * 108.59783 * 181.22614 * 23 16 15 25 25 C 1.46946 * 111.05803 * 61.98976 * 20 19 16 26 26 N 1.31970 * 119.27056 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47326 * 270.01984 * 1 2 3 28 28 H 1.09004 * 109.47306 * 30.01473 * 1 2 3 29 29 H 1.08996 * 109.47593 * 150.02272 * 1 2 3 30 30 H 1.07998 * 120.18969 * 0.02562 * 3 2 1 31 31 H 1.08007 * 120.86264 * 180.28522 * 4 3 2 32 32 H 0.96998 * 120.00486 * 179.97438 * 9 8 6 33 33 H 0.97000 * 119.99698 * 4.58973 * 15 14 5 34 34 H 1.08997 * 109.47262 * 174.82323 * 17 16 15 35 35 H 1.09004 * 109.46883 * 294.82374 * 17 16 15 36 36 H 1.00906 * 110.99811 * 65.45974 * 18 17 16 37 37 H 1.00896 * 110.99994 * 189.41437 * 18 17 16 38 38 H 1.09002 * 109.48979 * 239.78387 * 19 16 15 39 39 H 1.08998 * 109.49000 * 359.83315 * 19 16 15 40 40 H 1.09000 * 109.48952 * 181.91869 * 21 20 19 41 41 H 1.08997 * 109.49389 * 301.98946 * 21 20 19 42 42 H 1.09004 * 109.57046 * 240.25053 * 22 21 20 43 43 H 1.09002 * 109.68006 * 119.94259 * 22 21 20 44 44 H 1.09002 * 110.11146 * 60.58804 * 23 16 15 45 45 H 1.08994 * 109.57810 * 299.19192 * 24 23 16 46 46 H 1.09002 * 109.67587 * 178.87048 * 24 23 16 47 47 H 1.08994 * 109.48838 * 58.00132 * 25 20 19 48 48 H 1.08995 * 109.48510 * 178.05060 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5651 1.2181 0.0063 5 6 4.2408 -0.0196 0.0008 6 6 5.6501 -0.0706 0.0012 7 1 6.1593 -0.9316 -0.4058 8 6 6.3887 0.9945 0.5289 9 7 5.7981 1.8962 1.2709 10 14 8.2178 1.1291 0.1741 11 1 8.7643 2.3366 0.8437 12 1 8.9119 -0.0786 0.6886 13 1 8.4312 1.2359 -1.2916 14 6 3.4736 -1.2110 0.0007 15 7 4.1072 -2.4379 0.0015 16 6 3.3198 -3.6691 -0.0999 17 6 2.4948 -3.6453 -1.3882 18 7 3.3845 -3.4205 -2.5354 19 6 4.2585 -4.8789 -0.1139 20 7 3.9538 -5.7454 1.0327 21 6 4.1775 -5.0395 2.3019 22 6 3.2372 -3.8338 2.3845 23 6 2.3845 -3.7822 1.1105 24 6 1.5943 -5.0921 0.9974 25 6 2.5806 -6.2625 0.9535 26 7 2.1522 -1.1512 0.0005 27 1 -0.3634 0.0004 1.0277 28 1 -0.3634 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5134 30 1 1.6364 2.1399 0.0004 31 1 4.1135 2.1486 0.0110 32 1 6.3101 2.6343 1.6370 33 1 5.0737 -2.4845 0.0693 34 1 1.9810 -4.5991 -1.5083 35 1 1.7607 -2.8413 -1.3348 36 1 4.0172 -4.1967 -2.6598 37 1 2.8540 -3.2481 -3.3761 38 1 4.1179 -5.4376 -1.0393 39 1 5.2918 -4.5383 -0.0481 40 1 3.9771 -5.7146 3.1338 41 1 5.2116 -4.6983 2.3510 42 1 3.8234 -2.9186 2.4689 43 1 2.5883 -3.9332 3.2546 44 1 1.7012 -2.9333 1.1369 45 1 0.9990 -5.0818 0.0844 46 1 0.9374 -5.2002 1.8605 47 1 2.4521 -6.8116 0.0208 48 1 2.3936 -6.9281 1.7962 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160518457.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:34 Heat of formation + Delta-G solvation = 49.318390 kcal Electronic energy + Delta-G solvation = -28817.253428 eV Core-core repulsion = 25292.483727 eV Total energy + Delta-G solvation = -3524.769701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88798 -38.35288 -35.43496 -34.09070 -33.07196 -31.77702 -30.83517 -30.55950 -30.03835 -28.38594 -27.21657 -24.62622 -23.90766 -22.89035 -22.61315 -21.42255 -20.50365 -19.91966 -17.27137 -17.00277 -16.44819 -16.26012 -16.12126 -15.31722 -14.96763 -14.89496 -14.17034 -14.00098 -13.76930 -13.32199 -12.92533 -12.81125 -12.72368 -12.50876 -12.42077 -12.05397 -11.94431 -11.83907 -11.66043 -11.62801 -11.46675 -11.34914 -11.12905 -11.06580 -10.96732 -10.66847 -10.49621 -10.43353 -10.02470 -9.92149 -9.68819 -9.18661 -8.76076 -8.24223 -8.04273 -7.84350 -7.65830 -6.69516 -6.33784 -4.11454 2.80698 3.09943 3.12399 3.20154 3.31445 3.98735 4.14440 4.39161 4.74993 4.83354 4.93561 5.15451 5.22947 5.33114 5.42352 5.46237 5.47847 5.56677 5.68494 5.72596 5.79912 5.90540 5.93375 5.97964 6.01405 6.15057 6.16214 6.21007 6.34543 6.43174 6.48181 6.51343 6.60445 6.65735 6.69027 6.87885 6.95819 7.07206 7.20751 7.22291 7.22479 7.33681 7.57138 7.77752 7.83535 7.89456 8.12274 8.41148 8.64291 8.78435 8.89641 9.14323 9.89437 10.30093 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.005817 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.584976 B = 4812.045890 C = 5915.748212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.024 3.976 3 C -0.191 4.191 4 C -0.122 4.122 5 C 0.028 3.972 6 C -0.452 4.452 7 H 0.073 0.927 8 C 0.074 3.926 9 N -0.804 5.804 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.268 1.268 13 H -0.266 1.266 14 C 0.334 3.666 15 N -0.699 5.699 16 C 0.183 3.817 17 C 0.057 3.943 18 N -0.833 5.833 19 C 0.053 3.947 20 N -0.529 5.529 21 C 0.054 3.946 22 C -0.142 4.142 23 C -0.096 4.096 24 C -0.149 4.149 25 C 0.052 3.948 26 N -0.527 5.527 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.278 0.722 33 H 0.400 0.600 34 H 0.012 0.988 35 H 0.099 0.901 36 H 0.326 0.674 37 H 0.333 0.667 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.111 0.889 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 -11.281 -1.177 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.110 4.110 3 C -0.214 4.214 4 C -0.149 4.149 5 C 0.021 3.979 6 C -0.484 4.484 7 H 0.091 0.909 8 C -0.142 4.142 9 N -0.431 5.431 10 Si 0.730 3.270 11 H -0.206 1.206 12 H -0.192 1.192 13 H -0.191 1.191 14 C 0.095 3.905 15 N -0.337 5.337 16 C 0.093 3.907 17 C -0.075 4.075 18 N -0.361 5.361 19 C -0.076 4.076 20 N -0.249 5.249 21 C -0.075 4.075 22 C -0.181 4.181 23 C -0.117 4.117 24 C -0.189 4.189 25 C -0.076 4.076 26 N -0.245 5.245 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.030 0.970 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.129 0.871 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.358 -11.692 -0.651 12.495 hybrid contribution 0.673 0.923 -0.411 1.214 sum -3.685 -10.769 -1.062 11.431 Atomic orbital electron populations 1.20270 0.92216 1.00410 1.00131 1.19924 0.94018 0.88317 1.08692 1.21158 0.95379 0.96475 1.08354 1.21337 0.92034 0.98286 1.03204 1.17888 0.93810 0.90139 0.96048 1.19094 0.90890 1.03203 1.35165 0.90883 1.25774 1.00494 0.94978 0.92925 1.69795 1.38167 1.11153 1.23992 0.86428 0.82609 0.78326 0.79644 1.20601 1.19247 1.19076 1.18314 0.87670 0.85402 0.99080 1.43654 1.06965 1.00462 1.82591 1.20466 0.91464 0.85700 0.93100 1.22283 0.95391 0.99330 0.90544 1.58426 1.23174 1.47744 1.06770 1.22469 0.99502 0.92188 0.93457 1.62611 1.23654 1.36129 1.02545 1.22176 0.99702 0.94330 0.91247 1.22100 0.98780 0.99766 0.97499 1.21621 0.97796 0.98047 0.94272 1.22322 0.98646 0.96116 1.01826 1.22172 0.87344 0.96303 1.01790 1.66300 1.08418 1.28885 1.20934 0.93459 0.93135 0.93093 0.89271 0.85892 0.91161 0.76302 0.96982 0.88299 0.86184 0.85528 0.90935 0.90234 0.91379 0.90882 0.90739 0.92776 0.87139 0.91858 0.92216 0.91374 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.01 0.37 -0.93 16 2 C 0.02 0.54 6.79 -82.37 -0.56 -0.02 16 3 C -0.19 -4.53 9.69 -39.50 -0.38 -4.91 16 4 C -0.12 -3.18 8.79 -38.62 -0.34 -3.52 16 5 C 0.03 0.72 5.60 -106.47 -0.60 0.13 16 6 C -0.45 -11.47 8.48 -37.89 -0.32 -11.80 16 7 H 0.07 1.77 6.77 -52.48 -0.36 1.42 16 8 C 0.07 1.83 5.22 -17.33 -0.09 1.74 16 9 N -0.80 -20.72 10.88 55.55 0.60 -20.12 16 10 Si 0.90 18.71 29.58 -169.99 -5.03 13.68 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 12 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 13 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 14 C 0.33 7.70 6.94 -155.02 -1.08 6.63 16 15 N -0.70 -13.63 4.10 -47.04 -0.19 -13.82 16 16 C 0.18 2.94 0.28 -131.55 -0.04 2.90 16 17 C 0.06 0.90 4.72 -3.82 -0.02 0.88 16 18 N -0.83 -12.51 9.27 -10.37 -0.10 -12.61 16 19 C 0.05 0.74 5.19 -3.74 -0.02 0.72 16 20 N -0.53 -7.09 5.22 -234.29 -1.22 -8.31 16 21 C 0.05 0.74 6.09 -3.73 -0.02 0.72 16 22 C -0.14 -2.25 5.59 -26.47 -0.15 -2.40 16 23 C -0.10 -1.55 2.30 -90.02 -0.21 -1.75 16 24 C -0.15 -1.97 5.40 -26.46 -0.14 -2.11 16 25 C 0.05 0.63 6.09 -3.73 -0.02 0.61 16 26 N -0.53 -11.73 5.50 -8.11 -0.04 -11.77 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.12 3.33 6.22 -52.48 -0.33 3.00 16 32 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 33 H 0.40 7.99 6.26 -40.82 -0.26 7.73 16 34 H 0.01 0.17 6.69 -51.93 -0.35 -0.17 16 35 H 0.10 1.87 6.17 -51.93 -0.32 1.55 16 36 H 0.33 4.26 7.76 -39.29 -0.30 3.95 16 37 H 0.33 4.57 9.08 -39.29 -0.36 4.21 16 38 H 0.07 0.94 6.69 -51.93 -0.35 0.59 16 39 H 0.08 1.17 7.36 -51.93 -0.38 0.79 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.40 7.62 -51.93 -0.40 1.01 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.11 2.13 6.05 -51.93 -0.31 1.82 16 45 H 0.06 0.82 6.56 -51.93 -0.34 0.48 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -26.73 355.98 -11.64 -38.37 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -7.40 Total: 22.32 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.62 Total: -13.11 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -0.95 Total: -66.63 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.73 -11.64 -38.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160518457.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.685 kcal (2) G-P(sol) polarization free energy of solvation -26.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds