Wall clock time and date at job start Tue Mar 31 2020 11:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38678 * 119.27444 * 2 1 4 4 C 1.38004 * 119.62275 * 179.69914 * 3 2 1 5 5 C 1.41009 * 118.28368 * 0.54466 * 4 3 2 6 6 C 1.41017 * 120.70644 * 179.73716 * 5 4 3 7 7 H 1.08003 * 119.99347 * 205.53623 * 6 5 4 8 8 C 1.39940 * 120.00154 * 25.52883 * 6 5 4 9 9 N 1.30863 * 120.00532 * 14.58086 * 8 6 5 10 10 Si 1.86807 * 119.99954 * 194.58386 * 8 6 5 11 11 H 1.48496 * 109.47142 * 180.02562 * 10 8 6 12 12 H 1.48503 * 109.46727 * 299.99935 * 10 8 6 13 13 H 1.48494 * 109.47375 * 59.99594 * 10 8 6 14 14 C 1.41710 * 118.58416 * 359.46175 * 5 4 3 15 15 N 1.38091 * 119.90430 * 180.29448 * 14 5 4 16 16 C 1.46495 * 119.99937 * 184.58197 * 15 14 5 17 17 C 1.53004 * 109.57722 * 58.26316 * 16 15 14 18 18 N 1.46900 * 109.47284 * 54.81800 * 17 16 15 19 19 C 1.53144 * 109.57636 * 178.51914 * 16 15 14 20 20 N 1.46915 * 109.36694 * 119.81865 * 19 16 15 21 21 C 1.46945 * 111.05127 * 297.99428 * 20 19 16 22 22 C 1.53126 * 109.35115 * 61.95876 * 21 20 19 23 23 C 1.53382 * 109.58278 * 297.86442 * 16 15 14 24 24 C 1.53394 * 108.59783 * 181.22614 * 23 16 15 25 25 C 1.46946 * 111.05803 * 61.98976 * 20 19 16 26 26 N 1.31970 * 119.27056 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47326 * 270.01984 * 1 2 3 28 28 H 1.09004 * 109.47306 * 30.01473 * 1 2 3 29 29 H 1.08996 * 109.47593 * 150.02272 * 1 2 3 30 30 H 1.07998 * 120.18969 * 0.02562 * 3 2 1 31 31 H 1.08007 * 120.86264 * 180.28522 * 4 3 2 32 32 H 0.96998 * 120.00486 * 179.97438 * 9 8 6 33 33 H 0.97000 * 119.99698 * 4.58973 * 15 14 5 34 34 H 1.08997 * 109.47262 * 174.82323 * 17 16 15 35 35 H 1.09004 * 109.46883 * 294.82374 * 17 16 15 36 36 H 1.00906 * 110.99811 * 65.45974 * 18 17 16 37 37 H 1.00896 * 110.99994 * 189.41437 * 18 17 16 38 38 H 1.09002 * 109.48979 * 239.78387 * 19 16 15 39 39 H 1.08998 * 109.49000 * 359.83315 * 19 16 15 40 40 H 1.09000 * 109.48952 * 181.91869 * 21 20 19 41 41 H 1.08997 * 109.49389 * 301.98946 * 21 20 19 42 42 H 1.09004 * 109.57046 * 240.25053 * 22 21 20 43 43 H 1.09002 * 109.68006 * 119.94259 * 22 21 20 44 44 H 1.09002 * 110.11146 * 60.58804 * 23 16 15 45 45 H 1.08994 * 109.57810 * 299.19192 * 24 23 16 46 46 H 1.09002 * 109.67587 * 178.87048 * 24 23 16 47 47 H 1.08994 * 109.48838 * 58.00132 * 25 20 19 48 48 H 1.08995 * 109.48510 * 178.05060 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5651 1.2181 0.0063 5 6 4.2408 -0.0196 0.0008 6 6 5.6501 -0.0706 0.0012 7 1 6.1593 -0.9316 -0.4058 8 6 6.3887 0.9945 0.5289 9 7 5.7981 1.8962 1.2709 10 14 8.2178 1.1291 0.1741 11 1 8.7643 2.3366 0.8437 12 1 8.9119 -0.0786 0.6886 13 1 8.4312 1.2359 -1.2916 14 6 3.4736 -1.2110 0.0007 15 7 4.1072 -2.4379 0.0015 16 6 3.3198 -3.6691 -0.0999 17 6 2.4948 -3.6453 -1.3882 18 7 3.3845 -3.4205 -2.5354 19 6 4.2585 -4.8789 -0.1139 20 7 3.9538 -5.7454 1.0327 21 6 4.1775 -5.0395 2.3019 22 6 3.2372 -3.8338 2.3845 23 6 2.3845 -3.7822 1.1105 24 6 1.5943 -5.0921 0.9974 25 6 2.5806 -6.2625 0.9535 26 7 2.1522 -1.1512 0.0005 27 1 -0.3634 0.0004 1.0277 28 1 -0.3634 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5134 30 1 1.6364 2.1399 0.0004 31 1 4.1135 2.1486 0.0110 32 1 6.3101 2.6343 1.6370 33 1 5.0737 -2.4845 0.0693 34 1 1.9810 -4.5991 -1.5083 35 1 1.7607 -2.8413 -1.3348 36 1 4.0172 -4.1967 -2.6598 37 1 2.8540 -3.2481 -3.3761 38 1 4.1179 -5.4376 -1.0393 39 1 5.2918 -4.5383 -0.0481 40 1 3.9771 -5.7146 3.1338 41 1 5.2116 -4.6983 2.3510 42 1 3.8234 -2.9186 2.4689 43 1 2.5883 -3.9332 3.2546 44 1 1.7012 -2.9333 1.1369 45 1 0.9990 -5.0818 0.0844 46 1 0.9374 -5.2002 1.8605 47 1 2.4521 -6.8116 0.0208 48 1 2.3936 -6.9281 1.7962 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160518457.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:33 Heat of formation + Delta-G solvation = 32.100622 kcal Electronic energy + Delta-G solvation = -28818.000047 eV Core-core repulsion = 25292.483727 eV Total energy + Delta-G solvation = -3525.516319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.12955 -40.09078 -36.80517 -35.92098 -34.54659 -33.01847 -32.42962 -31.83091 -31.58957 -29.86981 -28.93218 -25.86725 -25.65971 -24.09395 -23.73682 -23.06412 -22.25783 -21.35882 -19.06121 -18.35546 -17.86313 -17.53009 -17.50278 -16.84734 -16.49933 -16.10804 -15.77943 -15.53577 -15.23731 -14.89813 -14.46966 -14.11139 -14.03193 -13.90230 -13.68662 -13.50523 -13.41819 -13.19997 -13.09127 -13.01118 -12.97297 -12.86039 -12.67244 -12.54350 -12.30231 -12.18956 -12.09855 -11.66600 -11.54076 -11.25242 -11.13448 -11.02724 -10.40097 -9.77314 -9.63367 -9.31623 -9.07398 -8.53986 -8.10373 -6.02483 1.01020 1.35790 1.39952 1.49159 1.55647 2.24678 2.82917 2.90109 3.10479 3.62759 3.76760 3.93032 3.94428 4.00809 4.12751 4.28973 4.31728 4.34183 4.40771 4.42219 4.55314 4.57647 4.62327 4.72021 4.78748 4.89046 4.97012 4.98518 4.98833 5.02925 5.03595 5.10951 5.17799 5.26586 5.29475 5.32988 5.36389 5.44409 5.48702 5.65818 5.91922 6.00943 6.09121 6.16822 6.24273 6.40339 6.54519 6.74976 6.90292 6.96635 7.04718 7.33796 8.08338 8.46735 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.005817 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.584976 B = 4812.045890 C = 5915.748212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.024 3.976 3 C -0.212 4.212 4 C -0.147 4.147 5 C -0.011 4.011 6 C -0.475 4.475 7 H 0.075 0.925 8 C 0.032 3.968 9 N -0.840 5.840 10 Si 0.975 3.025 11 H -0.276 1.276 12 H -0.259 1.259 13 H -0.265 1.265 14 C 0.339 3.661 15 N -0.692 5.692 16 C 0.180 3.820 17 C 0.066 3.934 18 N -0.847 5.847 19 C 0.059 3.941 20 N -0.525 5.525 21 C 0.059 3.941 22 C -0.138 4.138 23 C -0.097 4.097 24 C -0.141 4.141 25 C 0.053 3.947 26 N -0.522 5.522 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.281 0.719 33 H 0.395 0.605 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.340 0.660 37 H 0.341 0.659 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.033 0.967 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 -14.118 -1.581 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.110 4.110 3 C -0.235 4.235 4 C -0.173 4.173 5 C -0.018 4.018 6 C -0.507 4.507 7 H 0.093 0.907 8 C -0.181 4.181 9 N -0.468 5.468 10 Si 0.797 3.203 11 H -0.201 1.201 12 H -0.183 1.183 13 H -0.190 1.190 14 C 0.099 3.901 15 N -0.327 5.327 16 C 0.091 3.909 17 C -0.067 4.067 18 N -0.377 5.377 19 C -0.070 4.070 20 N -0.245 5.245 21 C -0.069 4.069 22 C -0.178 4.178 23 C -0.118 4.118 24 C -0.181 4.181 25 C -0.075 4.075 26 N -0.241 5.241 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.232 0.768 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.876 -14.578 -1.063 15.409 hybrid contribution 0.692 1.755 -0.270 1.906 sum -4.184 -12.823 -1.333 13.554 Atomic orbital electron populations 1.20297 0.88750 1.01939 1.01377 1.20737 0.96445 0.87837 1.05969 1.21364 0.94748 0.97944 1.09457 1.21312 0.93188 0.97824 1.04995 1.18246 0.94664 0.91160 0.97719 1.19281 0.91189 1.04039 1.36168 0.90651 1.26573 1.04822 0.94363 0.92294 1.69888 1.39894 1.11910 1.25155 0.85360 0.77146 0.78583 0.79229 1.20079 1.18296 1.19015 1.18519 0.88008 0.86105 0.97465 1.43779 1.06960 1.00642 1.81341 1.20727 0.91753 0.84901 0.93529 1.22086 0.94796 0.99269 0.90512 1.58363 1.23630 1.48747 1.06988 1.22425 0.98419 0.91427 0.94749 1.62647 1.24783 1.35210 1.01821 1.22149 0.98643 0.93753 0.92383 1.22040 0.98829 0.99044 0.97849 1.21502 0.97457 0.98682 0.94186 1.22259 0.98670 0.94632 1.02494 1.22296 0.85694 0.95855 1.03623 1.66569 1.07784 1.28637 1.21147 0.92196 0.91170 0.91983 0.87720 0.88044 0.90916 0.76849 0.94592 0.91377 0.84696 0.84659 0.88996 0.91023 0.89199 0.91631 0.94779 0.92160 0.90562 0.91421 0.91364 0.89654 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.15 71.24 0.72 -1.54 16 2 C 0.02 1.08 6.79 42.64 0.29 1.37 16 3 C -0.21 -10.37 9.69 22.32 0.22 -10.15 16 4 C -0.15 -8.04 8.79 22.89 0.20 -7.84 16 5 C -0.01 -0.59 5.60 -21.06 -0.12 -0.71 16 6 C -0.47 -25.15 8.48 23.36 0.20 -24.96 16 7 H 0.08 3.79 6.77 -2.91 -0.02 3.77 16 8 C 0.03 1.62 5.22 85.25 0.45 2.07 16 9 N -0.84 -45.39 10.88 21.83 0.24 -45.15 16 10 Si 0.97 39.33 29.58 68.60 2.03 41.36 16 11 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 12 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 13 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 14 C 0.34 16.11 6.94 134.05 0.93 17.05 16 15 N -0.69 -27.41 4.10 -302.74 -1.24 -28.65 16 16 C 0.18 5.60 0.28 3.78 0.00 5.60 16 17 C 0.07 1.97 4.72 86.30 0.41 2.38 16 18 N -0.85 -24.20 9.27 -186.71 -1.73 -25.93 16 19 C 0.06 1.53 5.19 86.35 0.45 1.98 16 20 N -0.52 -12.44 5.22 -895.16 -4.67 -17.12 16 21 C 0.06 1.52 6.09 86.34 0.53 2.04 16 22 C -0.14 -4.31 5.59 30.77 0.17 -4.14 16 23 C -0.10 -3.02 2.30 -10.40 -0.02 -3.05 16 24 C -0.14 -3.30 5.40 30.77 0.17 -3.13 16 25 C 0.05 1.06 6.09 86.34 0.53 1.59 16 26 N -0.52 -23.59 5.50 -179.57 -0.99 -24.57 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.13 8.07 -2.38 -0.02 2.11 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.10 5.88 6.22 -2.91 -0.02 5.86 16 32 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 33 H 0.40 16.20 6.26 -92.71 -0.58 15.62 16 34 H 0.04 0.92 6.69 -2.39 -0.02 0.90 16 35 H 0.07 2.52 6.17 -2.39 -0.01 2.50 16 36 H 0.34 8.10 7.76 -89.69 -0.70 7.40 16 37 H 0.34 8.85 9.08 -89.70 -0.81 8.04 16 38 H 0.09 2.06 6.69 -2.39 -0.02 2.04 16 39 H 0.07 2.00 7.36 -2.39 -0.02 1.99 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.03 1.32 7.62 -2.39 -0.02 1.30 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 2.94 6.05 -2.39 -0.01 2.92 16 45 H 0.07 1.54 6.56 -2.39 -0.02 1.52 16 46 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -60.86 355.98 -2.34 -63.21 By element: Atomic # 1 Polarization: 59.38 SS G_CDS: -1.09 Total: 58.29 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 5.11 Total: -21.44 kcal Atomic # 7 Polarization: -133.02 SS G_CDS: -8.40 Total: -141.42 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -60.86 -2.34 -63.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160518457.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.308 kcal (2) G-P(sol) polarization free energy of solvation -60.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds