Wall clock time and date at job start Tue Mar 31 2020 11:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38677 * 119.27494 * 2 1 4 4 C 1.38013 * 119.62274 * 180.02562 * 3 2 1 5 5 C 1.40997 * 118.28137 * 359.75249 * 4 3 2 6 6 C 1.41017 * 120.70599 * 180.24523 * 5 4 3 7 7 H 1.07997 * 120.00461 * 150.17986 * 6 5 4 8 8 C 1.39953 * 120.00071 * 330.17827 * 6 5 4 9 9 N 1.30867 * 119.99618 * 345.44834 * 8 6 5 10 10 Si 1.86798 * 120.00040 * 165.44418 * 8 6 5 11 11 H 1.48493 * 109.46877 * 90.00467 * 10 8 6 12 12 H 1.48506 * 109.47017 * 210.00228 * 10 8 6 13 13 H 1.48498 * 109.46995 * 330.00174 * 10 8 6 14 14 C 1.41710 * 118.58921 * 0.48806 * 5 4 3 15 15 N 1.38095 * 119.90461 * 179.77962 * 14 5 4 16 16 C 1.46497 * 119.99902 * 175.89802 * 15 14 5 17 17 C 1.53006 * 109.68206 * 65.05286 * 16 15 14 18 18 N 1.46899 * 109.47103 * 54.69954 * 17 16 15 19 19 C 1.53136 * 109.58063 * 304.72775 * 16 15 14 20 20 N 1.46908 * 109.38488 * 240.20177 * 19 16 15 21 21 C 1.46951 * 111.05677 * 61.98892 * 20 19 16 22 22 C 1.53121 * 109.35037 * 298.04154 * 21 20 19 23 23 C 1.53390 * 108.84730 * 359.94045 * 22 21 20 24 24 C 1.53395 * 108.59553 * 301.07391 * 23 22 21 25 25 C 1.46941 * 111.05861 * 297.99287 * 20 19 16 26 26 N 1.31966 * 119.27084 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47344 * 269.97832 * 1 2 3 28 28 H 1.09001 * 109.46776 * 29.97980 * 1 2 3 29 29 H 1.09004 * 109.47130 * 149.97752 * 1 2 3 30 30 H 1.08000 * 120.18843 * 0.04195 * 3 2 1 31 31 H 1.07995 * 120.85342 * 180.02562 * 4 3 2 32 32 H 0.96999 * 119.99851 * 179.97438 * 9 8 6 33 33 H 0.96995 * 119.99751 * 355.90274 * 15 14 5 34 34 H 1.08995 * 109.46955 * 174.69077 * 17 16 15 35 35 H 1.08994 * 109.47552 * 294.69459 * 17 16 15 36 36 H 1.00899 * 111.00370 * 64.20593 * 18 17 16 37 37 H 1.00901 * 111.00324 * 188.16864 * 18 17 16 38 38 H 1.09000 * 109.49304 * 120.22546 * 19 16 15 39 39 H 1.09001 * 109.49106 * 0.17809 * 19 16 15 40 40 H 1.09001 * 109.48600 * 58.00751 * 21 20 19 41 41 H 1.09002 * 109.49014 * 178.07645 * 21 20 19 42 42 H 1.08998 * 109.57758 * 240.12613 * 22 21 20 43 43 H 1.09002 * 109.67829 * 119.80482 * 22 21 20 44 44 H 1.08998 * 110.11456 * 180.44198 * 23 22 21 45 45 H 1.08996 * 109.58119 * 299.11823 * 24 23 22 46 46 H 1.09003 * 109.68198 * 178.79360 * 24 23 22 47 47 H 1.09002 * 109.49057 * 181.92504 * 25 20 19 48 48 H 1.09002 * 109.49159 * 301.99351 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5653 1.2180 -0.0005 5 6 4.2409 -0.0195 0.0043 6 6 5.6501 -0.0706 0.0092 7 1 6.1588 -0.9001 0.4777 8 6 6.3896 0.9536 -0.5932 9 7 5.7997 1.7998 -1.3985 10 14 8.2184 1.1128 -0.2475 11 1 8.9812 0.3158 -1.2414 12 1 8.6182 2.5397 -0.3452 13 1 8.5094 0.6096 1.1190 14 6 3.4736 -1.2110 -0.0011 15 7 4.1073 -2.4379 -0.0012 16 6 3.3187 -3.6696 0.0839 17 6 2.4526 -3.8146 -1.1690 18 7 3.3039 -3.7422 -2.3639 19 6 2.4223 -3.6203 1.3245 20 7 2.7585 -4.7402 2.2139 21 6 4.1486 -4.6446 2.6809 22 6 5.0941 -4.7229 1.4790 23 6 4.2596 -4.8758 0.2011 24 6 3.4114 -6.1484 0.3202 25 6 2.5129 -6.0302 1.5545 26 7 2.1523 -1.1512 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6364 2.1399 0.0007 31 1 4.1135 2.1485 -0.0001 32 1 6.3121 2.5100 -1.8157 33 1 5.0745 -2.4842 -0.0576 34 1 1.9392 -4.7758 -1.1465 35 1 1.7172 -3.0106 -1.1974 36 1 3.9493 -4.5171 -2.3957 37 1 2.7459 -3.7015 -3.2036 38 1 1.3780 -3.6972 1.0219 39 1 2.5802 -2.6785 1.8501 40 1 4.2942 -3.6957 3.1972 41 1 4.3600 -5.4671 3.3642 42 1 5.7544 -5.5830 1.5892 43 1 5.6887 -3.8112 1.4198 44 1 4.9138 -4.9415 -0.6682 45 1 4.0649 -7.0144 0.4258 46 1 2.7944 -6.2631 -0.5710 47 1 2.7378 -6.8413 2.2471 48 1 1.4678 -6.0902 1.2507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160518459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:37 Heat of formation + Delta-G solvation = 47.408980 kcal Electronic energy + Delta-G solvation = -28742.987223 eV Core-core repulsion = 25218.134724 eV Total energy + Delta-G solvation = -3524.852499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.95009 -38.36935 -35.41762 -34.04393 -33.12766 -31.78793 -30.89934 -30.69873 -29.89807 -28.46724 -27.20966 -24.50356 -23.93983 -22.85906 -22.77202 -21.43495 -20.54476 -19.96225 -17.22602 -17.14657 -16.57950 -16.24260 -16.02207 -15.37643 -14.93865 -14.72628 -14.28623 -14.08426 -13.76757 -13.42950 -13.03498 -12.84414 -12.67529 -12.50600 -12.43579 -12.07337 -11.89533 -11.87227 -11.64672 -11.52531 -11.44804 -11.41443 -11.27144 -11.12297 -10.96266 -10.74799 -10.55145 -10.44679 -10.11510 -9.90442 -9.65510 -9.16435 -8.90973 -8.21570 -7.96775 -7.86426 -7.69356 -6.67595 -6.30337 -4.11360 2.80724 3.11110 3.13817 3.18172 3.30502 4.00368 4.23380 4.35471 4.69508 4.77427 4.88951 4.98034 5.04727 5.26995 5.29824 5.36796 5.53149 5.53902 5.60549 5.72509 5.79659 5.84228 5.89965 5.95663 5.98083 6.06877 6.17430 6.17816 6.29102 6.34706 6.41363 6.47525 6.51636 6.60893 6.62312 6.76731 6.91658 7.04785 7.22384 7.28921 7.32936 7.37000 7.58559 7.76676 7.84143 7.89280 8.11440 8.38947 8.65220 8.78986 8.90798 9.14032 9.89067 10.34242 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.005838 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.901584 B = 4795.179362 C = 6008.541896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.031 3.969 3 C -0.192 4.192 4 C -0.116 4.116 5 C 0.029 3.971 6 C -0.458 4.458 7 H 0.071 0.929 8 C 0.077 3.923 9 N -0.804 5.804 10 Si 0.902 3.098 11 H -0.273 1.273 12 H -0.278 1.278 13 H -0.264 1.264 14 C 0.331 3.669 15 N -0.700 5.700 16 C 0.184 3.816 17 C 0.056 3.944 18 N -0.832 5.832 19 C 0.064 3.936 20 N -0.534 5.534 21 C 0.057 3.943 22 C -0.148 4.148 23 C -0.093 4.093 24 C -0.147 4.147 25 C 0.053 3.947 26 N -0.528 5.528 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.277 0.723 33 H 0.400 0.600 34 H 0.013 0.987 35 H 0.098 0.902 36 H 0.325 0.675 37 H 0.332 0.668 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -12.209 2.541 12.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C -0.215 4.215 4 C -0.142 4.142 5 C 0.022 3.978 6 C -0.490 4.490 7 H 0.089 0.911 8 C -0.139 4.139 9 N -0.431 5.431 10 Si 0.727 3.273 11 H -0.198 1.198 12 H -0.204 1.204 13 H -0.188 1.188 14 C 0.093 3.907 15 N -0.337 5.337 16 C 0.094 3.906 17 C -0.077 4.077 18 N -0.360 5.360 19 C -0.065 4.065 20 N -0.254 5.254 21 C -0.072 4.072 22 C -0.187 4.187 23 C -0.112 4.112 24 C -0.187 4.187 25 C -0.076 4.076 26 N -0.246 5.246 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.237 0.763 34 H 0.031 0.969 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.829 -12.104 3.161 13.082 hybrid contribution 1.954 0.059 -1.217 2.302 sum -1.875 -12.045 1.945 12.344 Atomic orbital electron populations 1.20281 0.92071 1.00554 1.00193 1.19944 0.94110 0.88207 1.08016 1.21160 0.95309 0.96581 1.08455 1.21205 0.92053 0.97957 1.03026 1.17860 0.93842 0.90039 0.96023 1.19025 0.90798 1.06387 1.32766 0.91145 1.25731 1.00284 0.94837 0.93040 1.69809 1.38107 1.13815 1.21372 0.86424 0.82984 0.78127 0.79776 1.19804 1.20355 1.18768 1.18332 0.87739 0.85461 0.99123 1.43627 1.07092 1.00210 1.82806 1.20465 0.91214 0.84653 0.94316 1.22371 0.95670 0.99296 0.90316 1.58455 1.22454 1.50880 1.04218 1.22567 0.98745 0.93698 0.91523 1.62594 1.21895 1.02434 1.38452 1.22119 0.86839 1.02217 0.96012 1.22206 0.98610 1.02248 0.95610 1.21354 0.96997 0.94513 0.98355 1.22303 0.99097 0.97389 0.99900 1.22168 0.99180 0.92192 0.94037 1.66389 1.08320 1.29137 1.20753 0.93304 0.93090 0.92981 0.89148 0.86530 0.91257 0.76280 0.96903 0.88410 0.86307 0.85606 0.90699 0.89280 0.90642 0.91419 0.92227 0.90948 0.90301 0.91913 0.91735 0.91199 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.01 0.37 -0.95 16 2 C 0.03 0.70 6.79 -82.37 -0.56 0.14 16 3 C -0.19 -4.55 9.69 -39.50 -0.38 -4.93 16 4 C -0.12 -3.02 8.76 -38.62 -0.34 -3.35 16 5 C 0.03 0.76 5.54 -106.47 -0.59 0.17 16 6 C -0.46 -11.70 8.37 -37.89 -0.32 -12.02 16 7 H 0.07 1.71 6.92 -52.49 -0.36 1.35 16 8 C 0.08 1.92 5.19 -17.32 -0.09 1.83 16 9 N -0.80 -21.05 11.17 55.55 0.62 -20.43 16 10 Si 0.90 18.80 29.58 -169.99 -5.03 13.77 16 11 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 14 C 0.33 7.74 6.53 -155.02 -1.01 6.73 16 15 N -0.70 -13.84 4.43 -47.02 -0.21 -14.05 16 16 C 0.18 2.98 0.28 -131.53 -0.04 2.94 16 17 C 0.06 0.90 5.04 -3.82 -0.02 0.88 16 18 N -0.83 -13.02 9.27 -10.37 -0.10 -13.11 16 19 C 0.06 1.07 4.40 -3.75 -0.02 1.05 16 20 N -0.53 -7.66 5.22 -234.29 -1.22 -8.88 16 21 C 0.06 0.77 6.09 -3.73 -0.02 0.75 16 22 C -0.15 -1.96 5.58 -26.47 -0.15 -2.11 16 23 C -0.09 -1.25 2.27 -89.99 -0.20 -1.46 16 24 C -0.15 -1.68 5.40 -26.46 -0.14 -1.83 16 25 C 0.05 0.63 6.09 -3.73 -0.02 0.61 16 26 N -0.53 -11.84 6.33 -8.11 -0.05 -11.89 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.12 3.14 6.55 -52.49 -0.34 2.80 16 32 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 33 H 0.40 8.14 5.89 -40.82 -0.24 7.90 16 34 H 0.01 0.19 6.14 -51.93 -0.32 -0.13 16 35 H 0.10 1.88 6.38 -51.93 -0.33 1.55 16 36 H 0.33 4.47 7.64 -39.29 -0.30 4.17 16 37 H 0.33 4.76 9.08 -39.29 -0.36 4.40 16 38 H 0.07 1.29 7.60 -51.93 -0.39 0.89 16 39 H 0.09 1.79 6.75 -51.93 -0.35 1.44 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.07 7.01 -51.93 -0.36 0.71 16 44 H 0.08 1.09 7.00 -51.93 -0.36 0.72 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.72 6.33 -51.93 -0.33 0.40 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -27.21 356.37 -11.57 -38.78 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -7.41 Total: 21.98 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -3.54 Total: -11.53 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -0.96 Total: -68.37 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.21 -11.57 -38.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160518459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.184 kcal (2) G-P(sol) polarization free energy of solvation -27.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds