Wall clock time and date at job start Tue Mar 31 2020 11:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38677 * 119.27494 * 2 1 4 4 C 1.38013 * 119.62274 * 180.02562 * 3 2 1 5 5 C 1.40997 * 118.28137 * 359.75249 * 4 3 2 6 6 C 1.41017 * 120.70599 * 180.24523 * 5 4 3 7 7 H 1.07997 * 120.00461 * 150.17986 * 6 5 4 8 8 C 1.39953 * 120.00071 * 330.17827 * 6 5 4 9 9 N 1.30867 * 119.99618 * 345.44834 * 8 6 5 10 10 Si 1.86798 * 120.00040 * 165.44418 * 8 6 5 11 11 H 1.48493 * 109.46877 * 90.00467 * 10 8 6 12 12 H 1.48506 * 109.47017 * 210.00228 * 10 8 6 13 13 H 1.48498 * 109.46995 * 330.00174 * 10 8 6 14 14 C 1.41710 * 118.58921 * 0.48806 * 5 4 3 15 15 N 1.38095 * 119.90461 * 179.77962 * 14 5 4 16 16 C 1.46497 * 119.99902 * 175.89802 * 15 14 5 17 17 C 1.53006 * 109.68206 * 65.05286 * 16 15 14 18 18 N 1.46899 * 109.47103 * 54.69954 * 17 16 15 19 19 C 1.53136 * 109.58063 * 304.72775 * 16 15 14 20 20 N 1.46908 * 109.38488 * 240.20177 * 19 16 15 21 21 C 1.46951 * 111.05677 * 61.98892 * 20 19 16 22 22 C 1.53121 * 109.35037 * 298.04154 * 21 20 19 23 23 C 1.53390 * 108.84730 * 359.94045 * 22 21 20 24 24 C 1.53395 * 108.59553 * 301.07391 * 23 22 21 25 25 C 1.46941 * 111.05861 * 297.99287 * 20 19 16 26 26 N 1.31966 * 119.27084 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47344 * 269.97832 * 1 2 3 28 28 H 1.09001 * 109.46776 * 29.97980 * 1 2 3 29 29 H 1.09004 * 109.47130 * 149.97752 * 1 2 3 30 30 H 1.08000 * 120.18843 * 0.04195 * 3 2 1 31 31 H 1.07995 * 120.85342 * 180.02562 * 4 3 2 32 32 H 0.96999 * 119.99851 * 179.97438 * 9 8 6 33 33 H 0.96995 * 119.99751 * 355.90274 * 15 14 5 34 34 H 1.08995 * 109.46955 * 174.69077 * 17 16 15 35 35 H 1.08994 * 109.47552 * 294.69459 * 17 16 15 36 36 H 1.00899 * 111.00370 * 64.20593 * 18 17 16 37 37 H 1.00901 * 111.00324 * 188.16864 * 18 17 16 38 38 H 1.09000 * 109.49304 * 120.22546 * 19 16 15 39 39 H 1.09001 * 109.49106 * 0.17809 * 19 16 15 40 40 H 1.09001 * 109.48600 * 58.00751 * 21 20 19 41 41 H 1.09002 * 109.49014 * 178.07645 * 21 20 19 42 42 H 1.08998 * 109.57758 * 240.12613 * 22 21 20 43 43 H 1.09002 * 109.67829 * 119.80482 * 22 21 20 44 44 H 1.08998 * 110.11456 * 180.44198 * 23 22 21 45 45 H 1.08996 * 109.58119 * 299.11823 * 24 23 22 46 46 H 1.09003 * 109.68198 * 178.79360 * 24 23 22 47 47 H 1.09002 * 109.49057 * 181.92504 * 25 20 19 48 48 H 1.09002 * 109.49159 * 301.99351 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5653 1.2180 -0.0005 5 6 4.2409 -0.0195 0.0043 6 6 5.6501 -0.0706 0.0092 7 1 6.1588 -0.9001 0.4777 8 6 6.3896 0.9536 -0.5932 9 7 5.7997 1.7998 -1.3985 10 14 8.2184 1.1128 -0.2475 11 1 8.9812 0.3158 -1.2414 12 1 8.6182 2.5397 -0.3452 13 1 8.5094 0.6096 1.1190 14 6 3.4736 -1.2110 -0.0011 15 7 4.1073 -2.4379 -0.0012 16 6 3.3187 -3.6696 0.0839 17 6 2.4526 -3.8146 -1.1690 18 7 3.3039 -3.7422 -2.3639 19 6 2.4223 -3.6203 1.3245 20 7 2.7585 -4.7402 2.2139 21 6 4.1486 -4.6446 2.6809 22 6 5.0941 -4.7229 1.4790 23 6 4.2596 -4.8758 0.2011 24 6 3.4114 -6.1484 0.3202 25 6 2.5129 -6.0302 1.5545 26 7 2.1523 -1.1512 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6364 2.1399 0.0007 31 1 4.1135 2.1485 -0.0001 32 1 6.3121 2.5100 -1.8157 33 1 5.0745 -2.4842 -0.0576 34 1 1.9392 -4.7758 -1.1465 35 1 1.7172 -3.0106 -1.1974 36 1 3.9493 -4.5171 -2.3957 37 1 2.7459 -3.7015 -3.2036 38 1 1.3780 -3.6972 1.0219 39 1 2.5802 -2.6785 1.8501 40 1 4.2942 -3.6957 3.1972 41 1 4.3600 -5.4671 3.3642 42 1 5.7544 -5.5830 1.5892 43 1 5.6887 -3.8112 1.4198 44 1 4.9138 -4.9415 -0.6682 45 1 4.0649 -7.0144 0.4258 46 1 2.7944 -6.2631 -0.5710 47 1 2.7378 -6.8413 2.2471 48 1 1.4678 -6.0902 1.2507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160518459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:36 Heat of formation + Delta-G solvation = 29.302857 kcal Electronic energy + Delta-G solvation = -28743.772364 eV Core-core repulsion = 25218.134724 eV Total energy + Delta-G solvation = -3525.637640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16253 -40.12074 -36.79816 -35.88445 -34.62624 -32.94386 -32.57602 -31.83021 -31.48202 -29.96740 -28.95391 -25.77589 -25.66071 -24.13007 -23.81192 -23.03815 -22.29573 -21.40942 -19.03591 -18.47598 -17.91155 -17.57239 -17.30533 -16.97171 -16.37109 -16.12317 -15.67006 -15.53400 -15.47388 -14.97910 -14.50433 -14.19031 -14.08189 -13.86996 -13.62000 -13.46165 -13.39952 -13.11518 -13.03773 -12.98268 -12.93846 -12.90158 -12.72721 -12.55777 -12.50061 -12.18494 -12.14961 -11.70950 -11.57537 -11.19619 -11.02523 -11.01549 -10.56216 -9.79729 -9.60452 -9.35714 -9.10548 -8.53795 -8.06640 -6.04072 1.00354 1.33378 1.39030 1.49043 1.53865 2.24917 2.80307 2.91895 3.14224 3.61113 3.71814 3.79335 3.89631 3.91962 4.16337 4.25243 4.28801 4.34641 4.38103 4.44137 4.48509 4.56342 4.64099 4.71344 4.79264 4.88307 4.98237 4.99964 5.02773 5.03579 5.05954 5.12297 5.16231 5.19581 5.27268 5.30477 5.32225 5.35780 5.44418 5.52527 5.88776 5.99450 6.14301 6.23201 6.26123 6.38131 6.52207 6.71164 6.90263 6.96382 7.03974 7.31976 8.06592 8.49384 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.005838 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.901584 B = 4795.179362 C = 6008.541896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.032 3.968 3 C -0.213 4.213 4 C -0.138 4.138 5 C -0.010 4.010 6 C -0.480 4.480 7 H 0.072 0.928 8 C 0.034 3.966 9 N -0.843 5.843 10 Si 0.973 3.027 11 H -0.266 1.266 12 H -0.275 1.275 13 H -0.260 1.260 14 C 0.334 3.666 15 N -0.693 5.693 16 C 0.181 3.819 17 C 0.064 3.936 18 N -0.847 5.847 19 C 0.078 3.922 20 N -0.540 5.540 21 C 0.057 3.943 22 C -0.145 4.145 23 C -0.089 4.089 24 C -0.138 4.138 25 C 0.051 3.949 26 N -0.525 5.525 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.280 0.720 33 H 0.396 0.604 34 H 0.038 0.962 35 H 0.066 0.934 36 H 0.338 0.662 37 H 0.340 0.660 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 -15.135 2.736 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C -0.236 4.236 4 C -0.164 4.164 5 C -0.017 4.017 6 C -0.513 4.513 7 H 0.091 0.909 8 C -0.178 4.178 9 N -0.471 5.471 10 Si 0.795 3.205 11 H -0.191 1.191 12 H -0.199 1.199 13 H -0.184 1.184 14 C 0.095 3.905 15 N -0.328 5.328 16 C 0.091 3.909 17 C -0.068 4.068 18 N -0.378 5.378 19 C -0.052 4.052 20 N -0.261 5.261 21 C -0.071 4.071 22 C -0.184 4.184 23 C -0.108 4.108 24 C -0.178 4.178 25 C -0.077 4.077 26 N -0.244 5.244 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.110 0.890 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.965 -15.079 3.359 15.950 hybrid contribution 1.857 0.901 -1.243 2.410 sum -2.108 -14.179 2.115 14.490 Atomic orbital electron populations 1.20319 0.88543 1.01916 1.01702 1.20773 0.96558 0.87712 1.05227 1.21377 0.94648 0.98086 1.09446 1.21184 0.93214 0.97414 1.04594 1.18215 0.94689 0.91062 0.97769 1.19212 0.91107 1.07283 1.33656 0.90946 1.26539 1.04686 0.94211 0.92387 1.69898 1.39904 1.14681 1.22605 0.85340 0.77358 0.78140 0.79640 1.19062 1.19948 1.18383 1.18561 0.88114 0.86221 0.97626 1.43736 1.07082 1.00438 1.81535 1.20701 0.91622 0.84203 0.94355 1.22177 0.95053 0.99312 0.90292 1.58399 1.23019 1.51912 1.04429 1.22245 0.98440 0.93085 0.91464 1.62558 1.22419 1.02873 1.38240 1.22131 0.86557 1.02019 0.96422 1.22181 0.98611 1.02268 0.95327 1.21344 0.96769 0.94203 0.98506 1.22263 0.99006 0.96649 0.99852 1.22306 0.99672 0.91090 0.94662 1.66618 1.07721 1.29024 1.21050 0.91573 0.91243 0.92083 0.87399 0.88670 0.90984 0.76818 0.94404 0.91560 0.84871 0.84769 0.91302 0.93350 0.93116 0.88822 0.89597 0.93278 0.90189 0.89467 0.91148 0.88952 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 10.15 71.24 0.72 -1.58 16 2 C 0.03 1.43 6.79 42.65 0.29 1.72 16 3 C -0.21 -10.35 9.69 22.32 0.22 -10.13 16 4 C -0.14 -7.53 8.76 22.89 0.20 -7.33 16 5 C -0.01 -0.56 5.54 -21.06 -0.12 -0.68 16 6 C -0.48 -25.64 8.37 23.37 0.20 -25.44 16 7 H 0.07 3.67 6.92 -2.91 -0.02 3.65 16 8 C 0.03 1.75 5.19 85.25 0.44 2.19 16 9 N -0.84 -46.04 11.17 21.83 0.24 -45.79 16 10 Si 0.97 39.56 29.58 68.60 2.03 41.59 16 11 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 12 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 13 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 14 C 0.33 16.13 6.53 134.05 0.87 17.01 16 15 N -0.69 -27.95 4.43 -302.68 -1.34 -29.29 16 16 C 0.18 5.72 0.28 3.79 0.00 5.72 16 17 C 0.06 1.99 5.04 86.31 0.44 2.42 16 18 N -0.85 -25.52 9.27 -186.72 -1.73 -27.25 16 19 C 0.08 2.57 4.40 86.35 0.38 2.95 16 20 N -0.54 -14.56 5.22 -895.15 -4.67 -19.23 16 21 C 0.06 1.46 6.09 86.33 0.53 1.98 16 22 C -0.14 -3.57 5.58 30.77 0.17 -3.40 16 23 C -0.09 -2.19 2.27 -10.39 -0.02 -2.22 16 24 C -0.14 -2.60 5.40 30.77 0.17 -2.43 16 25 C 0.05 1.02 6.09 86.34 0.53 1.55 16 26 N -0.53 -24.01 6.33 -179.57 -1.14 -25.15 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 28 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 29 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 31 H 0.10 5.49 6.55 -2.91 -0.02 5.47 16 32 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 33 H 0.40 16.53 5.89 -92.71 -0.55 15.99 16 34 H 0.04 0.99 6.14 -2.39 -0.01 0.98 16 35 H 0.07 2.51 6.38 -2.39 -0.02 2.50 16 36 H 0.34 8.62 7.64 -89.69 -0.68 7.93 16 37 H 0.34 9.33 9.08 -89.69 -0.81 8.51 16 38 H 0.07 2.33 7.60 -2.39 -0.02 2.31 16 39 H 0.05 2.00 6.75 -2.39 -0.02 1.98 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.44 7.01 -2.39 -0.02 1.42 16 44 H 0.08 2.00 7.00 -2.39 -0.02 1.98 16 45 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 1.27 6.33 -2.39 -0.02 1.26 16 47 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -62.19 356.37 -2.64 -64.83 By element: Atomic # 1 Polarization: 59.02 SS G_CDS: -1.04 Total: 57.97 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 5.01 Total: -17.67 kcal Atomic # 7 Polarization: -138.08 SS G_CDS: -8.64 Total: -146.72 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -62.19 -2.64 -64.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160518459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.137 kcal (2) G-P(sol) polarization free energy of solvation -62.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds