Wall clock time and date at job start Tue Mar 31 2020 11:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86807 * 119.99761 * 2 1 4 4 H 1.48501 * 109.46787 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46870 * 119.99479 * 3 2 1 6 6 H 1.48497 * 109.46916 * 239.99676 * 3 2 1 7 7 C 1.40049 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00172 * 173.67229 * 7 2 1 9 9 C 1.41278 * 119.99793 * 353.66943 * 7 2 1 10 10 C 1.40719 * 120.15561 * 186.17000 * 9 7 2 11 11 N 1.31904 * 119.92903 * 180.02562 * 10 9 7 12 12 C 1.32163 * 120.27166 * 0.02562 * 11 10 9 13 13 C 1.39921 * 120.32012 * 0.02562 * 12 11 10 14 14 N 1.38832 * 119.96821 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99772 * 359.97438 * 14 13 12 16 16 H 1.08992 * 110.27429 * 327.09488 * 15 14 13 17 17 C 1.54602 * 110.30301 * 89.28578 * 15 14 13 18 18 C 1.54934 * 102.92108 * 96.95897 * 17 15 14 19 19 N 1.48540 * 103.22811 * 37.40955 * 18 17 15 20 20 C 1.46902 * 111.00124 * 200.27928 * 19 18 17 21 21 C 1.52995 * 109.47121 * 287.40051 * 20 19 18 22 22 C 1.54265 * 110.03032 * 292.16358 * 21 20 19 23 23 C 1.54895 * 104.19719 * 217.10845 * 22 21 20 24 24 C 1.54883 * 102.74780 * 37.94189 * 23 22 21 25 25 C 1.53875 * 110.03405 * 174.99855 * 21 20 19 26 26 C 1.47903 * 105.81975 * 320.79433 * 19 18 17 27 27 N 1.32268 * 120.06086 * 359.67787 * 13 12 11 28 28 H 0.97003 * 120.00400 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.03923 * 359.97438 * 10 9 7 30 30 H 1.07993 * 119.83946 * 180.02562 * 12 11 10 31 31 H 0.96996 * 120.00035 * 180.02562 * 14 13 12 32 32 H 1.08997 * 110.72163 * 215.31397 * 17 15 14 33 33 H 1.08993 * 110.72798 * 338.60042 * 17 15 14 34 34 H 1.09001 * 110.66755 * 278.97553 * 18 17 15 35 35 H 1.09004 * 110.81379 * 155.91210 * 18 17 15 36 36 H 1.09002 * 109.46628 * 47.39409 * 20 19 18 37 37 H 1.08998 * 109.47093 * 167.39254 * 20 19 18 38 38 H 1.08997 * 110.02168 * 53.60624 * 21 20 19 39 39 H 1.08999 * 110.48964 * 335.78552 * 22 21 20 40 40 H 1.09000 * 110.48568 * 98.43042 * 22 21 20 41 41 H 1.09004 * 110.75341 * 279.62999 * 23 22 21 42 42 H 1.08999 * 110.75673 * 156.26005 * 23 22 21 43 43 H 1.09003 * 110.48782 * 203.37851 * 24 23 22 44 44 H 1.09003 * 110.48940 * 80.73729 * 24 23 22 45 45 H 1.08997 * 110.03805 * 238.56570 * 25 21 20 46 46 H 1.09005 * 110.03210 * 359.97438 * 25 21 20 47 47 H 1.08999 * 109.91358 * 265.97653 * 26 19 18 48 48 H 1.08995 * 110.08077 * 144.77703 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2761 2.7465 -0.0006 5 1 3.0949 1.6965 1.2125 6 1 3.0950 1.6964 -1.2124 7 6 2.0076 -1.2128 0.0005 8 1 3.0827 -1.2157 -0.1025 9 6 1.3077 -2.4325 0.1360 10 6 2.0144 -3.6423 0.2673 11 7 1.3564 -4.7786 0.3930 12 6 0.0348 -4.7863 0.3957 13 6 -0.6789 -3.5900 0.2647 14 7 -2.0671 -3.6067 0.2679 15 6 -2.7840 -4.8767 0.4078 16 1 -2.2208 -5.6822 -0.0632 17 6 -3.0293 -5.1925 1.9012 18 6 -4.4761 -4.6873 2.1291 19 7 -5.1636 -5.0417 0.8609 20 6 -6.3825 -4.2418 0.6815 21 6 -7.4577 -4.7247 1.6569 22 6 -7.9231 -6.1438 1.2701 23 6 -9.4436 -6.1386 1.5655 24 6 -9.8715 -4.7152 1.1301 25 6 -8.6966 -3.8164 1.5679 26 6 -4.1876 -4.7696 -0.2165 27 7 -0.0322 -2.4425 0.1438 28 1 -0.4851 0.8400 -0.0004 29 1 3.0944 -3.6406 0.2644 30 1 -0.4968 -5.7206 0.4994 31 1 -2.5623 -2.7777 0.1768 32 1 -2.9618 -6.2648 2.0848 33 1 -2.3267 -4.6473 2.5313 34 1 -4.4870 -3.6084 2.2840 35 1 -4.9372 -5.2005 2.9730 36 1 -6.1604 -3.1925 0.8760 37 1 -6.7430 -4.3533 -0.3411 38 1 -7.0663 -4.7237 2.6742 39 1 -7.7407 -6.3299 0.2118 40 1 -7.4181 -6.8909 1.8824 41 1 -9.6311 -6.2901 2.6285 42 1 -9.9553 -6.8949 0.9702 43 1 -10.7884 -4.4197 1.6401 44 1 -10.0038 -4.6704 0.0491 45 1 -8.9069 -3.3752 2.5421 46 1 -8.5316 -3.0312 0.8301 47 1 -4.3422 -3.7660 -0.6127 48 1 -4.2962 -5.5044 -1.0142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161186717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:04 Heat of formation + Delta-G solvation = 37.535277 kcal Electronic energy + Delta-G solvation = -26172.394030 eV Core-core repulsion = 22647.113375 eV Total energy + Delta-G solvation = -3525.280655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.68474 -38.80729 -37.84689 -34.81262 -33.86059 -32.10263 -31.08642 -29.24311 -29.14893 -28.78866 -27.17140 -25.85469 -24.15329 -22.41271 -21.73962 -21.16582 -20.67946 -20.27776 -19.42539 -17.47710 -16.73465 -16.37673 -15.98593 -15.43115 -15.22258 -14.99094 -14.82151 -14.56759 -14.31129 -13.58422 -13.50920 -13.44004 -13.15801 -13.02271 -12.58493 -12.26769 -11.77098 -11.61099 -11.51422 -11.39490 -11.33835 -11.31392 -11.18958 -11.17477 -11.09629 -10.83696 -10.76074 -10.69695 -10.56716 -10.41941 -10.39343 -9.84647 -9.62039 -9.38131 -8.47090 -8.35858 -7.38686 -6.72282 -6.45385 -4.66132 2.71013 3.02468 3.04696 3.11924 3.28288 3.77244 3.86450 4.16235 4.45487 4.47005 4.53699 4.69220 4.73449 4.86213 5.12070 5.15249 5.25496 5.33515 5.36420 5.42385 5.43782 5.47496 5.58364 5.63620 5.65381 5.69439 5.72528 5.83403 5.88131 5.89987 5.98235 5.99724 6.08823 6.12576 6.15124 6.21702 6.29171 6.31316 6.37835 6.54674 6.74500 6.88166 6.99874 7.03359 7.14348 7.60932 7.95354 8.05151 8.42330 8.55732 8.85281 9.42259 10.00364 10.18177 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.002659 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.515828 B =10529.016233 C =11686.814868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.068 3.932 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.417 4.417 8 H 0.090 0.910 9 C 0.246 3.754 10 C -0.108 4.108 11 N -0.408 5.408 12 C -0.168 4.168 13 C 0.373 3.627 14 N -0.724 5.724 15 C 0.155 3.845 16 H 0.089 0.911 17 C -0.138 4.138 18 C 0.037 3.963 19 N -0.513 5.513 20 C 0.053 3.947 21 C -0.086 4.086 22 C -0.104 4.104 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.122 4.122 26 C 0.031 3.969 27 N -0.509 5.509 28 H 0.274 0.726 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.393 0.607 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.430 -5.632 2.404 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.450 4.450 8 H 0.108 0.892 9 C 0.117 3.883 10 C -0.278 4.278 11 N -0.119 5.119 12 C -0.330 4.330 13 C 0.130 3.870 14 N -0.361 5.361 15 C 0.047 3.953 16 H 0.107 0.893 17 C -0.178 4.178 18 C -0.091 4.091 19 N -0.237 5.237 20 C -0.076 4.076 21 C -0.105 4.105 22 C -0.142 4.142 23 C -0.167 4.167 24 C -0.162 4.162 25 C -0.160 4.160 26 C -0.098 4.098 27 N -0.236 5.236 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.138 0.862 31 H 0.228 0.772 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.833 -6.255 2.406 19.050 hybrid contribution 0.333 2.058 -0.013 2.084 sum -17.500 -4.197 2.393 18.155 Atomic orbital electron populations 1.70102 1.07357 1.28030 1.27689 1.26124 0.94928 1.01290 0.93457 0.86334 0.80089 0.80063 0.80081 1.20256 1.18756 1.18768 1.19583 0.94903 0.89283 1.41199 0.89228 1.19089 0.87716 0.93220 0.88229 1.22904 0.98956 0.89357 1.16584 1.67514 1.08291 1.30119 1.05983 1.21947 0.90663 0.95846 1.24525 1.19498 0.85040 0.91996 0.90430 1.44293 1.02589 1.07188 1.82025 1.21498 0.91402 0.87631 0.94775 0.89309 1.23037 0.95667 1.01614 0.97482 1.23230 0.94249 0.98730 0.92841 1.64787 1.04188 1.52447 1.02265 1.22441 0.90776 0.94723 0.99610 1.21725 0.94195 0.95302 0.99248 1.22261 0.94120 0.96131 1.01647 1.22555 0.96688 0.96614 1.00849 1.22345 0.97677 0.95322 1.00808 1.22200 0.94498 0.98011 1.01310 1.23131 0.90905 1.00855 0.94865 1.69037 1.08372 1.22348 1.23795 0.91517 0.85319 0.86173 0.77202 0.90502 0.90301 0.93800 0.90401 0.94648 0.90923 0.91123 0.91464 0.91631 0.91835 0.91890 0.92067 0.91790 0.91959 0.91825 0.93024 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.32 11.51 55.55 0.64 -17.68 16 2 C 0.07 1.69 5.49 -17.34 -0.10 1.60 16 3 Si 0.91 18.06 29.57 -169.99 -5.03 13.04 16 4 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 5 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.42 -10.91 9.15 -37.75 -0.35 -11.25 16 8 H 0.09 2.16 7.86 -52.49 -0.41 1.74 16 9 C 0.25 6.75 6.54 -84.83 -0.55 6.19 16 10 C -0.11 -2.81 10.97 -16.58 -0.18 -2.99 16 11 N -0.41 -10.43 10.47 -12.11 -0.13 -10.55 16 12 C -0.17 -4.01 10.40 -16.78 -0.17 -4.19 16 13 C 0.37 8.95 7.66 -155.00 -1.19 7.76 16 14 N -0.72 -13.87 5.22 -52.48 -0.27 -14.14 16 15 C 0.15 2.34 3.03 -66.57 -0.20 2.13 16 16 H 0.09 1.39 6.39 -51.93 -0.33 1.06 16 17 C -0.14 -1.92 6.78 -24.87 -0.17 -2.09 16 18 C 0.04 0.45 5.92 -1.90 -0.01 0.44 16 19 N -0.51 -5.95 5.06 -230.45 -1.17 -7.12 16 20 C 0.05 0.55 3.76 -3.83 -0.01 0.53 16 21 C -0.09 -0.78 2.97 -89.50 -0.27 -1.05 16 22 C -0.10 -0.91 6.19 -25.07 -0.16 -1.07 16 23 C -0.13 -0.98 6.91 -24.74 -0.17 -1.15 16 24 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 25 C -0.12 -1.00 6.46 -25.61 -0.17 -1.16 16 26 C 0.03 0.39 6.44 -2.76 -0.02 0.38 16 27 N -0.51 -13.83 8.10 -10.14 -0.08 -13.91 16 28 H 0.27 6.41 8.29 -40.82 -0.34 6.07 16 29 H 0.13 3.05 8.06 -52.49 -0.42 2.63 16 30 H 0.12 2.55 6.19 -52.49 -0.32 2.22 16 31 H 0.39 7.60 8.46 -40.82 -0.35 7.25 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 34 H 0.04 0.58 7.81 -51.93 -0.41 0.17 16 35 H 0.08 0.87 7.66 -51.93 -0.40 0.47 16 36 H 0.04 0.39 7.83 -51.93 -0.41 -0.01 16 37 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 38 H 0.07 0.69 7.16 -51.93 -0.37 0.32 16 39 H 0.07 0.63 7.76 -51.93 -0.40 0.22 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 47 H 0.05 0.68 7.26 -51.93 -0.38 0.31 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -28.73 376.28 -12.19 -40.92 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.94 Total: 10.78 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -3.88 Total: -7.01 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -1.01 Total: -63.40 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.73 -12.19 -40.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161186717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.455 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds