Wall clock time and date at job start Tue Mar 31 2020 11:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86807 * 119.99761 * 2 1 4 4 H 1.48501 * 109.46787 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46870 * 119.99479 * 3 2 1 6 6 H 1.48497 * 109.46916 * 239.99676 * 3 2 1 7 7 C 1.40049 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00172 * 173.67229 * 7 2 1 9 9 C 1.41278 * 119.99793 * 353.66943 * 7 2 1 10 10 C 1.40719 * 120.15561 * 186.17000 * 9 7 2 11 11 N 1.31904 * 119.92903 * 180.02562 * 10 9 7 12 12 C 1.32163 * 120.27166 * 0.02562 * 11 10 9 13 13 C 1.39921 * 120.32012 * 0.02562 * 12 11 10 14 14 N 1.38832 * 119.96821 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99772 * 359.97438 * 14 13 12 16 16 H 1.08992 * 110.27429 * 327.09488 * 15 14 13 17 17 C 1.54602 * 110.30301 * 89.28578 * 15 14 13 18 18 C 1.54934 * 102.92108 * 96.95897 * 17 15 14 19 19 N 1.48540 * 103.22811 * 37.40955 * 18 17 15 20 20 C 1.46902 * 111.00124 * 200.27928 * 19 18 17 21 21 C 1.52995 * 109.47121 * 287.40051 * 20 19 18 22 22 C 1.54265 * 110.03032 * 292.16358 * 21 20 19 23 23 C 1.54895 * 104.19719 * 217.10845 * 22 21 20 24 24 C 1.54883 * 102.74780 * 37.94189 * 23 22 21 25 25 C 1.53875 * 110.03405 * 174.99855 * 21 20 19 26 26 C 1.47903 * 105.81975 * 320.79433 * 19 18 17 27 27 N 1.32268 * 120.06086 * 359.67787 * 13 12 11 28 28 H 0.97003 * 120.00400 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.03923 * 359.97438 * 10 9 7 30 30 H 1.07993 * 119.83946 * 180.02562 * 12 11 10 31 31 H 0.96996 * 120.00035 * 180.02562 * 14 13 12 32 32 H 1.08997 * 110.72163 * 215.31397 * 17 15 14 33 33 H 1.08993 * 110.72798 * 338.60042 * 17 15 14 34 34 H 1.09001 * 110.66755 * 278.97553 * 18 17 15 35 35 H 1.09004 * 110.81379 * 155.91210 * 18 17 15 36 36 H 1.09002 * 109.46628 * 47.39409 * 20 19 18 37 37 H 1.08998 * 109.47093 * 167.39254 * 20 19 18 38 38 H 1.08997 * 110.02168 * 53.60624 * 21 20 19 39 39 H 1.08999 * 110.48964 * 335.78552 * 22 21 20 40 40 H 1.09000 * 110.48568 * 98.43042 * 22 21 20 41 41 H 1.09004 * 110.75341 * 279.62999 * 23 22 21 42 42 H 1.08999 * 110.75673 * 156.26005 * 23 22 21 43 43 H 1.09003 * 110.48782 * 203.37851 * 24 23 22 44 44 H 1.09003 * 110.48940 * 80.73729 * 24 23 22 45 45 H 1.08997 * 110.03805 * 238.56570 * 25 21 20 46 46 H 1.09005 * 110.03210 * 359.97438 * 25 21 20 47 47 H 1.08999 * 109.91358 * 265.97653 * 26 19 18 48 48 H 1.08995 * 110.08077 * 144.77703 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2761 2.7465 -0.0006 5 1 3.0949 1.6965 1.2125 6 1 3.0950 1.6964 -1.2124 7 6 2.0076 -1.2128 0.0005 8 1 3.0827 -1.2157 -0.1025 9 6 1.3077 -2.4325 0.1360 10 6 2.0144 -3.6423 0.2673 11 7 1.3564 -4.7786 0.3930 12 6 0.0348 -4.7863 0.3957 13 6 -0.6789 -3.5900 0.2647 14 7 -2.0671 -3.6067 0.2679 15 6 -2.7840 -4.8767 0.4078 16 1 -2.2208 -5.6822 -0.0632 17 6 -3.0293 -5.1925 1.9012 18 6 -4.4761 -4.6873 2.1291 19 7 -5.1636 -5.0417 0.8609 20 6 -6.3825 -4.2418 0.6815 21 6 -7.4577 -4.7247 1.6569 22 6 -7.9231 -6.1438 1.2701 23 6 -9.4436 -6.1386 1.5655 24 6 -9.8715 -4.7152 1.1301 25 6 -8.6966 -3.8164 1.5679 26 6 -4.1876 -4.7696 -0.2165 27 7 -0.0322 -2.4425 0.1438 28 1 -0.4851 0.8400 -0.0004 29 1 3.0944 -3.6406 0.2644 30 1 -0.4968 -5.7206 0.4994 31 1 -2.5623 -2.7777 0.1768 32 1 -2.9618 -6.2648 2.0848 33 1 -2.3267 -4.6473 2.5313 34 1 -4.4870 -3.6084 2.2840 35 1 -4.9372 -5.2005 2.9730 36 1 -6.1604 -3.1925 0.8760 37 1 -6.7430 -4.3533 -0.3411 38 1 -7.0663 -4.7237 2.6742 39 1 -7.7407 -6.3299 0.2118 40 1 -7.4181 -6.8909 1.8824 41 1 -9.6311 -6.2901 2.6285 42 1 -9.9553 -6.8949 0.9702 43 1 -10.7884 -4.4197 1.6401 44 1 -10.0038 -4.6704 0.0491 45 1 -8.9069 -3.3752 2.5421 46 1 -8.5316 -3.0312 0.8301 47 1 -4.3422 -3.7660 -0.6127 48 1 -4.2962 -5.5044 -1.0142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161186717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:03 Heat of formation + Delta-G solvation = 20.890344 kcal Electronic energy + Delta-G solvation = -26173.115809 eV Core-core repulsion = 22647.113375 eV Total energy + Delta-G solvation = -3526.002434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.04711 -40.26924 -38.77687 -36.29927 -35.70403 -33.70355 -32.54563 -30.81290 -30.09109 -29.47987 -28.43467 -27.76591 -25.09115 -24.26639 -23.40884 -22.15798 -21.60537 -21.36290 -20.27805 -19.30804 -18.41033 -17.46290 -17.26886 -16.87095 -16.68059 -16.36035 -16.13084 -15.70697 -15.33283 -15.06320 -14.88183 -14.75254 -14.24626 -14.14142 -13.61504 -13.44251 -13.27956 -13.22521 -13.00820 -12.90632 -12.62097 -12.44798 -12.25357 -12.04684 -11.95269 -11.90834 -11.80146 -11.75793 -11.70104 -11.51355 -11.41880 -11.36742 -11.31549 -11.16896 -10.24091 -9.45986 -9.31445 -8.49236 -8.33660 -6.64037 0.84404 1.26123 1.41065 1.53218 1.57450 2.20132 2.40733 2.82753 3.02057 3.53817 3.66394 3.78648 3.85383 3.89131 3.98409 4.05029 4.22700 4.28059 4.31454 4.39619 4.48577 4.49942 4.56941 4.62444 4.65708 4.67417 4.77264 4.85072 4.87133 4.91260 4.93797 4.96430 5.01365 5.08946 5.11342 5.13709 5.15244 5.16710 5.24634 5.30305 5.44348 5.51195 5.58922 5.70792 5.82691 6.03957 6.08966 6.26054 6.63596 6.68460 6.97994 7.47004 8.07992 8.34028 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.002659 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.515828 B =10529.016233 C =11686.814868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.024 3.976 3 Si 0.992 3.008 4 H -0.269 1.269 5 H -0.258 1.258 6 H -0.255 1.255 7 C -0.443 4.443 8 H 0.101 0.899 9 C 0.215 3.785 10 C -0.135 4.135 11 N -0.417 5.417 12 C -0.172 4.172 13 C 0.369 3.631 14 N -0.713 5.713 15 C 0.149 3.851 16 H 0.087 0.913 17 C -0.132 4.132 18 C 0.044 3.956 19 N -0.506 5.506 20 C 0.054 3.946 21 C -0.083 4.083 22 C -0.102 4.102 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.122 4.122 26 C 0.039 3.961 27 N -0.541 5.541 28 H 0.281 0.719 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.391 0.609 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.032 0.968 35 H 0.094 0.906 36 H 0.027 0.973 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.046 0.954 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.794 -5.470 2.475 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.200 4.200 3 Si 0.812 3.188 4 H -0.193 1.193 5 H -0.182 1.182 6 H -0.179 1.179 7 C -0.475 4.475 8 H 0.119 0.881 9 C 0.088 3.912 10 C -0.303 4.303 11 N -0.128 5.128 12 C -0.334 4.334 13 C 0.124 3.876 14 N -0.348 5.348 15 C 0.043 3.957 16 H 0.105 0.895 17 C -0.172 4.172 18 C -0.083 4.083 19 N -0.230 5.230 20 C -0.074 4.074 21 C -0.102 4.102 22 C -0.140 4.140 23 C -0.164 4.164 24 C -0.160 4.160 25 C -0.160 4.160 26 C -0.090 4.090 27 N -0.268 5.268 28 H 0.092 0.908 29 H 0.158 0.842 30 H 0.164 0.836 31 H 0.226 0.774 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.112 0.888 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.222 -6.128 2.479 20.327 hybrid contribution 0.640 1.928 -0.030 2.032 sum -18.582 -4.200 2.450 19.208 Atomic orbital electron populations 1.70187 1.09050 1.29516 1.27709 1.27088 0.95778 1.04746 0.92361 0.85105 0.78579 0.74823 0.80303 1.19339 1.18233 1.17931 1.20015 0.95719 0.89983 1.41778 0.88146 1.19529 0.88407 0.94304 0.89002 1.23051 0.99626 0.89334 1.18324 1.67515 1.09141 1.30056 1.06118 1.22354 0.90407 0.96882 1.23785 1.19798 0.86799 0.91476 0.89518 1.44444 1.00953 1.08718 1.80704 1.21763 0.92294 0.85632 0.96042 0.89470 1.22948 0.96139 1.02275 0.95838 1.23173 0.93333 0.98126 0.93712 1.64862 1.04137 1.52510 1.01536 1.22484 0.90449 0.94090 1.00374 1.21697 0.94159 0.95859 0.98453 1.22225 0.95029 0.95556 1.01168 1.22546 0.95755 0.96948 1.01196 1.22347 0.97664 0.94953 1.01028 1.22198 0.94337 0.97945 1.01514 1.23069 0.89497 1.01081 0.95324 1.69040 1.08628 1.23827 1.25349 0.90795 0.84157 0.83629 0.77383 0.88894 0.92780 0.94966 0.88804 0.95463 0.90384 0.91668 0.91950 0.92138 0.91550 0.91173 0.91179 0.91624 0.91677 0.91957 0.93521 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.77 11.51 21.84 0.25 -38.51 16 2 C 0.02 1.17 5.49 85.30 0.47 1.64 16 3 Si 0.99 36.68 29.57 68.60 2.03 38.71 16 4 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 6 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 7 C -0.44 -23.57 9.15 23.46 0.21 -23.36 16 8 H 0.10 4.90 7.86 -2.91 -0.02 4.87 16 9 C 0.22 12.17 6.54 40.17 0.26 12.43 16 10 C -0.13 -7.19 10.97 85.29 0.94 -6.25 16 11 N -0.42 -21.58 10.47 -192.23 -2.01 -23.60 16 12 C -0.17 -8.22 10.40 85.05 0.88 -7.34 16 13 C 0.37 17.96 7.66 133.35 1.02 18.98 16 14 N -0.71 -27.45 5.22 -319.94 -1.67 -29.12 16 15 C 0.15 4.37 3.03 45.87 0.14 4.51 16 16 H 0.09 2.62 6.39 -2.39 -0.02 2.60 16 17 C -0.13 -3.55 6.78 31.80 0.22 -3.34 16 18 C 0.04 1.02 5.92 86.65 0.51 1.54 16 19 N -0.51 -10.94 5.06 -883.01 -4.47 -15.42 16 20 C 0.05 1.04 3.76 86.30 0.32 1.37 16 21 C -0.08 -1.38 2.97 -10.07 -0.03 -1.41 16 22 C -0.10 -1.61 6.19 31.67 0.20 -1.42 16 23 C -0.13 -1.66 6.91 31.89 0.22 -1.44 16 24 C -0.12 -1.57 6.83 31.67 0.22 -1.35 16 25 C -0.12 -1.79 6.46 31.32 0.20 -1.58 16 26 C 0.04 0.93 6.44 86.44 0.56 1.49 16 27 N -0.54 -30.13 8.10 -185.99 -1.51 -31.64 16 28 H 0.28 13.22 8.29 -92.71 -0.77 12.45 16 29 H 0.14 6.86 8.06 -2.91 -0.02 6.83 16 30 H 0.15 6.05 6.19 -2.91 -0.02 6.04 16 31 H 0.39 15.33 8.46 -92.71 -0.78 14.55 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 34 H 0.03 0.83 7.81 -2.39 -0.02 0.81 16 35 H 0.09 1.91 7.66 -2.38 -0.02 1.89 16 36 H 0.03 0.58 7.83 -2.39 -0.02 0.56 16 37 H 0.08 1.44 7.94 -2.39 -0.02 1.42 16 38 H 0.06 1.17 7.16 -2.39 -0.02 1.15 16 39 H 0.06 1.05 7.76 -2.39 -0.02 1.03 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 0.93 7.67 -2.38 -0.02 0.91 16 47 H 0.05 1.19 7.26 -2.39 -0.02 1.17 16 48 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -62.45 376.28 -0.87 -63.32 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: 0.17 Total: 41.79 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 6.34 Total: -5.54 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -9.41 Total: -138.29 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 2.03 Total: 38.71 kcal Total: -62.45 -0.87 -63.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161186717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.212 kcal (2) G-P(sol) polarization free energy of solvation -62.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds