Wall clock time and date at job start Tue Mar 31 2020 11:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86791 * 119.99973 * 2 1 4 4 H 1.48500 * 109.47226 * 239.99865 * 3 2 1 5 5 H 1.48499 * 109.47445 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47209 * 120.00191 * 3 2 1 7 7 C 1.40019 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 197.08425 * 7 2 1 9 9 C 1.41563 * 120.00086 * 17.08877 * 7 2 1 10 10 C 1.41179 * 120.99091 * 203.21612 * 9 7 2 11 11 C 1.36566 * 119.14301 * 179.97438 * 10 9 7 12 12 N 1.32094 * 121.26570 * 0.02967 * 11 10 9 13 13 C 1.32527 * 122.22232 * 359.96560 * 12 11 10 14 14 N 1.39072 * 119.66030 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00064 * 180.02562 * 14 13 12 16 16 C 1.53116 * 109.52368 * 274.41006 * 15 14 13 17 17 C 1.53033 * 109.27887 * 182.44242 * 16 15 14 18 18 N 1.46846 * 109.52526 * 59.17745 * 17 16 15 19 19 C 1.46903 * 110.99944 * 174.15766 * 18 17 16 20 20 H 1.09007 * 110.26623 * 74.91392 * 19 18 17 21 21 C 1.54588 * 110.31398 * 312.82461 * 19 18 17 22 22 C 1.55093 * 102.85008 * 219.18540 * 21 19 18 23 23 N 1.48538 * 103.28294 * 37.30056 * 22 21 19 24 24 C 1.47897 * 105.82195 * 320.84970 * 23 22 21 25 25 C 1.46842 * 111.20046 * 298.25860 * 18 17 16 26 26 C 1.53039 * 109.51989 * 61.74010 * 25 18 17 27 27 C 1.38751 * 120.68127 * 0.26676 * 13 12 11 28 28 H 0.96999 * 119.99879 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.43164 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.36299 * 180.02562 * 11 10 9 31 31 H 0.97000 * 119.99693 * 359.73369 * 14 13 12 32 32 H 1.08999 * 109.52052 * 34.60332 * 15 14 13 33 33 H 1.09005 * 109.50084 * 302.38333 * 16 15 14 34 34 H 1.09000 * 109.50569 * 62.49599 * 16 15 14 35 35 H 1.09000 * 109.46011 * 299.15744 * 17 16 15 36 36 H 1.09002 * 109.46029 * 179.19861 * 17 16 15 37 37 H 1.09004 * 110.72329 * 337.48438 * 21 19 18 38 38 H 1.09004 * 110.72374 * 100.76390 * 21 19 18 39 39 H 1.09007 * 110.59229 * 278.87686 * 22 21 19 40 40 H 1.09001 * 110.83551 * 155.84966 * 22 21 19 41 41 H 1.00899 * 110.99526 * 81.36416 * 23 22 21 42 42 H 1.08997 * 109.92045 * 265.97687 * 24 23 22 43 43 H 1.09004 * 110.08182 * 144.76846 * 24 23 22 44 44 H 1.09005 * 109.46153 * 301.72776 * 25 18 17 45 45 H 1.08999 * 109.45700 * 181.75154 * 25 18 17 46 46 H 1.09004 * 109.49856 * 180.88343 * 26 25 18 47 47 H 1.08997 * 109.50464 * 60.76929 * 26 25 18 48 48 H 1.07999 * 120.66041 * 179.73716 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0518 -1.2331 0.2753 9 6 1.3466 -2.4117 -0.3592 10 6 1.8278 -3.6656 0.0758 11 6 1.1603 -4.7985 -0.2931 12 7 0.0773 -4.7413 -1.0472 13 6 -0.4195 -3.5931 -1.4844 14 7 -1.5629 -3.5949 -2.2761 15 6 -2.1181 -2.3300 -2.7639 16 6 -3.0484 -1.7364 -1.7024 17 6 -3.6724 -0.4472 -2.2414 18 7 -4.4244 -0.7413 -3.4679 19 6 -5.1512 0.4459 -3.9373 20 1 -4.4609 1.1547 -4.3950 21 6 -5.9049 1.1126 -2.7638 22 6 -7.2452 1.5430 -3.4147 23 7 -7.5437 0.4285 -4.3501 24 6 -6.2452 0.0403 -4.9423 25 6 -3.5432 -1.2682 -4.5177 26 6 -2.9154 -2.5820 -4.0466 27 6 0.1927 -2.3895 -1.1653 28 1 -0.4850 0.8400 0.0004 29 1 2.7122 -3.7282 0.6924 30 1 1.5251 -5.7596 0.0380 31 1 -1.9902 -4.4340 -2.5089 32 1 -1.3070 -1.6317 -2.9703 33 1 -3.8367 -2.4520 -1.4682 34 1 -2.4774 -1.5151 -0.8007 35 1 -2.8844 0.2729 -2.4623 36 1 -4.3463 -0.0296 -1.4934 37 1 -6.0789 0.3965 -1.9606 38 1 -5.3566 1.9802 -2.3963 39 1 -7.1238 2.4798 -3.9588 40 1 -8.0293 1.6350 -2.6631 41 1 -7.9660 -0.3483 -3.8639 42 1 -6.0957 0.5650 -5.8859 43 1 -6.2164 -1.0367 -5.1079 44 1 -2.7558 -0.5443 -4.7280 45 1 -4.1235 -1.4469 -5.4229 46 1 -2.2492 -2.9647 -4.8199 47 1 -3.7015 -3.3108 -3.8494 48 1 -0.2100 -1.4543 -1.5252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161469391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:56 Heat of formation + Delta-G solvation = 38.399932 kcal Electronic energy + Delta-G solvation = -27114.044696 eV Core-core repulsion = 23588.801535 eV Total energy + Delta-G solvation = -3525.243161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.88050 -38.56055 -37.42562 -34.84289 -33.98389 -31.55394 -30.94297 -30.34662 -29.27157 -28.21257 -26.94006 -25.88162 -23.33170 -23.31290 -21.63324 -21.38329 -20.52836 -19.99238 -19.51891 -17.67883 -17.14984 -15.96916 -15.76581 -15.43091 -15.18030 -14.80598 -14.59606 -14.14067 -14.01011 -13.87739 -13.71688 -13.47768 -13.25459 -12.60896 -12.55885 -12.44191 -12.28834 -12.08594 -11.62051 -11.56490 -11.48006 -11.39992 -11.23864 -11.07925 -11.02700 -10.90876 -10.73919 -10.50701 -10.24015 -10.08001 -9.81508 -9.39004 -8.94528 -8.86661 -8.28942 -7.95764 -7.85095 -6.82657 -6.39031 -4.54180 2.82736 3.00612 3.04387 3.06173 3.34420 3.76443 3.87228 4.07150 4.12597 4.43717 4.71446 4.77829 4.91071 4.99215 5.10456 5.16897 5.24191 5.36049 5.38298 5.50013 5.53780 5.65131 5.69759 5.76349 5.77010 5.78113 5.80426 5.84027 5.94304 6.00135 6.09454 6.18240 6.31357 6.50162 6.54731 6.72999 6.77678 6.92244 6.99688 7.04589 7.08167 7.14780 7.19160 7.29645 7.57488 7.89590 7.99939 8.18930 8.46317 8.80675 8.85232 8.93344 9.78913 10.11572 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.003920 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.018742 B = 7141.791204 C = 8775.472012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.081 3.919 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.151 3.849 10 C -0.303 4.303 11 C 0.130 3.870 12 N -0.624 5.624 13 C 0.386 3.614 14 N -0.738 5.738 15 C 0.170 3.830 16 C -0.128 4.128 17 C 0.059 3.941 18 N -0.531 5.531 19 C 0.053 3.947 20 H 0.048 0.952 21 C -0.155 4.155 22 C 0.043 3.957 23 N -0.673 5.673 24 C 0.050 3.950 25 C 0.061 3.939 26 C -0.122 4.122 27 C -0.279 4.279 28 H 0.279 0.721 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.387 0.613 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.339 0.661 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.034 0.966 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.752 4.227 -7.536 14.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.143 3.857 10 C -0.328 4.328 11 C -0.023 4.023 12 N -0.347 5.347 13 C 0.157 3.843 14 N -0.372 5.372 15 C 0.063 3.937 16 C -0.168 4.168 17 C -0.069 4.069 18 N -0.256 5.256 19 C -0.057 4.057 20 H 0.066 0.934 21 C -0.194 4.194 22 C -0.087 4.087 23 N -0.300 5.300 24 C -0.080 4.080 25 C -0.068 4.068 26 C -0.160 4.160 27 C -0.305 4.305 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.135 0.865 31 H 0.220 0.780 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.155 0.845 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.987 3.826 -8.242 15.850 hybrid contribution 1.853 1.455 0.903 2.523 sum -11.134 5.281 -7.340 14.343 Atomic orbital electron populations 1.69806 1.07527 1.28983 1.34469 1.25891 0.94719 1.01134 0.92040 0.86416 0.80266 0.80276 0.80079 1.18837 1.20357 1.18910 1.19542 0.97845 0.90950 1.40551 0.90374 1.17587 0.89921 0.91922 0.86290 1.21485 1.05756 0.94089 1.11498 1.21219 0.90819 0.96576 0.93641 1.66739 1.17663 1.28071 1.22211 1.18159 0.86426 0.90130 0.89534 1.44136 1.28937 1.06629 1.57510 1.20657 0.94689 0.86550 0.91803 1.22079 0.98725 0.95775 1.00190 1.22119 0.95856 0.97605 0.91359 1.62176 1.28848 1.29537 1.05053 1.22946 0.95960 0.91162 0.95678 0.93431 1.23311 0.97196 1.00646 0.98274 1.23099 0.95536 0.95671 0.94372 1.62753 1.22429 1.11176 1.33654 1.22774 0.87052 1.01259 0.96904 1.22019 0.94599 0.96024 0.94149 1.21845 0.99323 0.97282 0.97554 1.21516 1.03458 0.96081 1.09478 0.91047 0.88559 0.86507 0.77991 0.90765 0.91974 0.89306 0.94693 0.90656 0.90008 0.90901 0.90425 0.90687 0.84541 0.90908 0.90420 0.94730 0.90742 0.91224 0.90993 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.14 10.91 55.55 0.61 -18.53 16 2 C 0.08 1.98 5.20 -17.35 -0.09 1.89 16 3 Si 0.91 18.16 29.59 -169.99 -5.03 13.13 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.99 9.12 -37.65 -0.34 -12.33 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.15 4.04 5.61 -106.55 -0.60 3.44 16 10 C -0.30 -7.57 9.85 -39.07 -0.38 -7.96 16 11 C 0.13 3.08 11.10 -18.04 -0.20 2.88 16 12 N -0.62 -15.31 10.36 -12.82 -0.13 -15.44 16 13 C 0.39 9.26 7.64 -154.99 -1.18 8.07 16 14 N -0.74 -14.43 5.25 -53.87 -0.28 -14.72 16 15 C 0.17 2.88 2.21 -67.81 -0.15 2.73 16 16 C -0.13 -2.13 5.64 -26.65 -0.15 -2.28 16 17 C 0.06 0.83 5.08 -3.84 -0.02 0.81 16 18 N -0.53 -6.43 4.41 -225.07 -0.99 -7.42 16 19 C 0.05 0.56 2.77 -66.36 -0.18 0.37 16 20 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 21 C -0.16 -1.51 5.38 -24.79 -0.13 -1.64 16 22 C 0.04 0.37 7.55 -1.81 -0.01 0.36 16 23 N -0.67 -6.33 7.51 -109.99 -0.83 -7.15 16 24 C 0.05 0.49 6.72 -2.76 -0.02 0.47 16 25 C 0.06 0.72 5.27 -3.84 -0.02 0.70 16 26 C -0.12 -1.61 5.57 -26.65 -0.15 -1.76 16 27 C -0.28 -7.15 7.61 -38.43 -0.29 -7.44 16 28 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 29 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 30 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 31 H 0.39 7.02 8.73 -40.82 -0.36 6.67 16 32 H 0.07 1.45 6.42 -51.93 -0.33 1.11 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.80 7.78 -51.93 -0.40 1.40 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.01 5.94 -51.93 -0.31 0.70 16 37 H 0.08 0.87 6.85 -51.93 -0.36 0.51 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.34 2.96 8.92 -39.29 -0.35 2.61 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.77 7.26 -51.93 -0.38 0.39 16 44 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.76 7.06 -51.93 -0.37 0.40 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.13 3.29 4.26 -52.49 -0.22 3.06 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -27.54 368.57 -12.73 -40.26 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -7.70 Total: 16.01 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -3.93 Total: -11.70 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -1.63 Total: -63.26 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.54 -12.73 -40.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161469391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.665 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds