Wall clock time and date at job start Tue Mar 31 2020 11:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86791 * 119.99973 * 2 1 4 4 H 1.48500 * 109.47226 * 239.99865 * 3 2 1 5 5 H 1.48499 * 109.47445 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47209 * 120.00191 * 3 2 1 7 7 C 1.40019 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 197.08425 * 7 2 1 9 9 C 1.41563 * 120.00086 * 17.08877 * 7 2 1 10 10 C 1.41179 * 120.99091 * 203.21612 * 9 7 2 11 11 C 1.36566 * 119.14301 * 179.97438 * 10 9 7 12 12 N 1.32094 * 121.26570 * 0.02967 * 11 10 9 13 13 C 1.32527 * 122.22232 * 359.96560 * 12 11 10 14 14 N 1.39072 * 119.66030 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00064 * 180.02562 * 14 13 12 16 16 C 1.53116 * 109.52368 * 274.41006 * 15 14 13 17 17 C 1.53033 * 109.27887 * 182.44242 * 16 15 14 18 18 N 1.46846 * 109.52526 * 59.17745 * 17 16 15 19 19 C 1.46903 * 110.99944 * 174.15766 * 18 17 16 20 20 H 1.09007 * 110.26623 * 74.91392 * 19 18 17 21 21 C 1.54588 * 110.31398 * 312.82461 * 19 18 17 22 22 C 1.55093 * 102.85008 * 219.18540 * 21 19 18 23 23 N 1.48538 * 103.28294 * 37.30056 * 22 21 19 24 24 C 1.47897 * 105.82195 * 320.84970 * 23 22 21 25 25 C 1.46842 * 111.20046 * 298.25860 * 18 17 16 26 26 C 1.53039 * 109.51989 * 61.74010 * 25 18 17 27 27 C 1.38751 * 120.68127 * 0.26676 * 13 12 11 28 28 H 0.96999 * 119.99879 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.43164 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.36299 * 180.02562 * 11 10 9 31 31 H 0.97000 * 119.99693 * 359.73369 * 14 13 12 32 32 H 1.08999 * 109.52052 * 34.60332 * 15 14 13 33 33 H 1.09005 * 109.50084 * 302.38333 * 16 15 14 34 34 H 1.09000 * 109.50569 * 62.49599 * 16 15 14 35 35 H 1.09000 * 109.46011 * 299.15744 * 17 16 15 36 36 H 1.09002 * 109.46029 * 179.19861 * 17 16 15 37 37 H 1.09004 * 110.72329 * 337.48438 * 21 19 18 38 38 H 1.09004 * 110.72374 * 100.76390 * 21 19 18 39 39 H 1.09007 * 110.59229 * 278.87686 * 22 21 19 40 40 H 1.09001 * 110.83551 * 155.84966 * 22 21 19 41 41 H 1.00899 * 110.99526 * 81.36416 * 23 22 21 42 42 H 1.08997 * 109.92045 * 265.97687 * 24 23 22 43 43 H 1.09004 * 110.08182 * 144.76846 * 24 23 22 44 44 H 1.09005 * 109.46153 * 301.72776 * 25 18 17 45 45 H 1.08999 * 109.45700 * 181.75154 * 25 18 17 46 46 H 1.09004 * 109.49856 * 180.88343 * 26 25 18 47 47 H 1.08997 * 109.50464 * 60.76929 * 26 25 18 48 48 H 1.07999 * 120.66041 * 179.73716 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0518 -1.2331 0.2753 9 6 1.3466 -2.4117 -0.3592 10 6 1.8278 -3.6656 0.0758 11 6 1.1603 -4.7985 -0.2931 12 7 0.0773 -4.7413 -1.0472 13 6 -0.4195 -3.5931 -1.4844 14 7 -1.5629 -3.5949 -2.2761 15 6 -2.1181 -2.3300 -2.7639 16 6 -3.0484 -1.7364 -1.7024 17 6 -3.6724 -0.4472 -2.2414 18 7 -4.4244 -0.7413 -3.4679 19 6 -5.1512 0.4459 -3.9373 20 1 -4.4609 1.1547 -4.3950 21 6 -5.9049 1.1126 -2.7638 22 6 -7.2452 1.5430 -3.4147 23 7 -7.5437 0.4285 -4.3501 24 6 -6.2452 0.0403 -4.9423 25 6 -3.5432 -1.2682 -4.5177 26 6 -2.9154 -2.5820 -4.0466 27 6 0.1927 -2.3895 -1.1653 28 1 -0.4850 0.8400 0.0004 29 1 2.7122 -3.7282 0.6924 30 1 1.5251 -5.7596 0.0380 31 1 -1.9902 -4.4340 -2.5089 32 1 -1.3070 -1.6317 -2.9703 33 1 -3.8367 -2.4520 -1.4682 34 1 -2.4774 -1.5151 -0.8007 35 1 -2.8844 0.2729 -2.4623 36 1 -4.3463 -0.0296 -1.4934 37 1 -6.0789 0.3965 -1.9606 38 1 -5.3566 1.9802 -2.3963 39 1 -7.1238 2.4798 -3.9588 40 1 -8.0293 1.6350 -2.6631 41 1 -7.9660 -0.3483 -3.8639 42 1 -6.0957 0.5650 -5.8859 43 1 -6.2164 -1.0367 -5.1079 44 1 -2.7558 -0.5443 -4.7280 45 1 -4.1235 -1.4469 -5.4229 46 1 -2.2492 -2.9647 -4.8199 47 1 -3.7015 -3.3108 -3.8494 48 1 -0.2100 -1.4543 -1.5252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161469391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:56 Heat of formation + Delta-G solvation = 20.243944 kcal Electronic energy + Delta-G solvation = -27114.831998 eV Core-core repulsion = 23588.801535 eV Total energy + Delta-G solvation = -3526.030464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98402 -40.19285 -38.60556 -36.31245 -35.75743 -32.96056 -32.25332 -32.01293 -30.18503 -29.59847 -28.18355 -27.80562 -24.68094 -24.40324 -23.34288 -22.34541 -22.16466 -21.07162 -20.72474 -19.50200 -18.08242 -17.51248 -17.23975 -16.63039 -16.56152 -16.16847 -15.93224 -15.59509 -15.44555 -15.09113 -14.87959 -14.79840 -14.66494 -14.34473 -14.14736 -13.88953 -13.28080 -13.19409 -13.12461 -12.91514 -12.71565 -12.55883 -12.47426 -12.33997 -12.19266 -12.03996 -11.97151 -11.90083 -11.71809 -11.64748 -11.34556 -11.20781 -10.60446 -9.89986 -9.79281 -9.67555 -9.28368 -8.67289 -8.18473 -6.51711 1.05955 1.14891 1.36252 1.46425 1.59112 2.17756 2.53184 2.78962 2.82514 3.33809 3.60367 3.76010 3.81768 3.98484 4.01924 4.10906 4.18680 4.25766 4.26364 4.33624 4.41935 4.47495 4.51640 4.63536 4.67680 4.69952 4.84214 4.86643 4.90888 4.93127 4.97153 5.01578 5.06821 5.07680 5.11234 5.14883 5.21694 5.28298 5.35577 5.37773 5.65127 5.77806 5.99957 6.04192 6.12069 6.12656 6.36663 6.45777 6.62953 6.90858 6.93491 7.11598 7.90165 8.28244 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.003920 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.018742 B = 7141.791204 C = 8775.472012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.043 3.957 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.492 4.492 8 H 0.077 0.923 9 C 0.119 3.881 10 C -0.326 4.326 11 C 0.130 3.870 12 N -0.635 5.635 13 C 0.382 3.618 14 N -0.727 5.727 15 C 0.171 3.829 16 C -0.116 4.116 17 C 0.070 3.930 18 N -0.526 5.526 19 C 0.051 3.949 20 H 0.043 0.957 21 C -0.153 4.153 22 C 0.048 3.952 23 N -0.678 5.678 24 C 0.057 3.943 25 C 0.062 3.938 26 C -0.110 4.110 27 C -0.300 4.300 28 H 0.287 0.713 29 H 0.106 0.894 30 H 0.153 0.847 31 H 0.396 0.604 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.017 0.983 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.343 0.657 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.026 0.974 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.129 4.934 -8.638 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.174 4.174 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.523 4.523 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.351 4.351 11 C -0.023 4.023 12 N -0.359 5.359 13 C 0.152 3.848 14 N -0.361 5.361 15 C 0.065 3.935 16 C -0.156 4.156 17 C -0.058 4.058 18 N -0.251 5.251 19 C -0.059 4.059 20 H 0.061 0.939 21 C -0.193 4.193 22 C -0.082 4.082 23 N -0.305 5.305 24 C -0.074 4.074 25 C -0.066 4.066 26 C -0.148 4.148 27 C -0.326 4.326 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.170 0.830 31 H 0.231 0.769 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.159 0.841 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.044 0.956 45 H 0.120 0.880 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.405 4.522 -9.363 17.765 hybrid contribution 2.227 1.200 1.258 2.825 sum -12.177 5.722 -8.105 15.707 Atomic orbital electron populations 1.69858 1.08770 1.30393 1.33584 1.26705 0.95532 1.04125 0.91074 0.85322 0.78971 0.75817 0.80066 1.18695 1.18957 1.18320 1.19814 0.98114 0.92129 1.42199 0.90484 1.18038 0.90789 0.93076 0.86959 1.21677 1.06706 0.94145 1.12557 1.21757 0.90181 0.97721 0.92596 1.66899 1.18177 1.27956 1.22838 1.18408 0.87253 0.89679 0.89420 1.44217 1.27598 1.08070 1.56255 1.20755 0.94133 0.84929 0.93721 1.21876 0.98126 0.97102 0.98499 1.21921 0.95566 0.95615 0.92708 1.62187 1.28194 1.30362 1.04390 1.23030 0.96037 0.90412 0.96387 0.93908 1.23283 0.97857 1.00341 0.97772 1.23107 0.95114 0.95486 0.94463 1.62767 1.22163 1.11565 1.33996 1.22720 0.86619 1.01385 0.96639 1.22064 0.94726 0.94919 0.94905 1.21769 0.99161 0.98475 0.95415 1.21484 1.04090 0.96477 1.10576 0.90195 0.87600 0.83027 0.76919 0.93714 0.91636 0.93506 0.96433 0.89881 0.90803 0.90984 0.90107 0.89392 0.84077 0.90384 0.90268 0.95569 0.87987 0.90390 0.89841 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.31 10.91 21.84 0.24 -40.07 16 2 C 0.04 2.14 5.20 85.29 0.44 2.59 16 3 Si 0.98 37.36 29.59 68.60 2.03 39.39 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.49 -26.62 9.12 23.52 0.21 -26.40 16 8 H 0.08 4.02 7.90 -2.91 -0.02 4.00 16 9 C 0.12 6.63 5.61 -21.12 -0.12 6.51 16 10 C -0.33 -16.65 9.85 22.60 0.22 -16.43 16 11 C 0.13 6.16 11.10 84.26 0.94 7.09 16 12 N -0.63 -31.27 10.36 -194.47 -2.02 -33.29 16 13 C 0.38 18.75 7.64 132.91 1.02 19.76 16 14 N -0.73 -28.69 5.25 -324.34 -1.70 -30.39 16 15 C 0.17 5.86 2.21 45.07 0.10 5.96 16 16 C -0.12 -3.97 5.64 30.64 0.17 -3.79 16 17 C 0.07 1.99 5.08 86.32 0.44 2.43 16 18 N -0.53 -12.01 4.41 -865.98 -3.82 -15.83 16 19 C 0.05 1.00 2.77 45.79 0.13 1.12 16 20 H 0.04 0.90 8.09 -2.38 -0.02 0.88 16 21 C -0.15 -2.75 5.38 31.85 0.17 -2.58 16 22 C 0.05 0.72 7.55 86.70 0.65 1.37 16 23 N -0.68 -11.10 7.51 -501.89 -3.77 -14.87 16 24 C 0.06 0.95 6.72 86.45 0.58 1.53 16 25 C 0.06 1.37 5.27 86.33 0.46 1.83 16 26 C -0.11 -2.76 5.57 30.65 0.17 -2.59 16 27 C -0.30 -15.99 7.61 23.01 0.18 -15.82 16 28 H 0.29 13.06 8.29 -92.71 -0.77 12.29 16 29 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 30 H 0.15 5.96 8.06 -2.91 -0.02 5.93 16 31 H 0.40 14.12 8.73 -92.71 -0.81 13.31 16 32 H 0.04 1.82 6.42 -2.39 -0.02 1.81 16 33 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.05 1.99 7.78 -2.39 -0.02 1.98 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 2.22 5.94 -2.39 -0.01 2.20 16 37 H 0.07 1.46 6.85 -2.38 -0.02 1.44 16 38 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 41 H 0.34 5.17 8.92 -89.69 -0.80 4.37 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.32 7.26 -2.39 -0.02 1.31 16 44 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.10 1.76 7.06 -2.39 -0.02 1.75 16 46 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 47 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.12 6.49 4.26 -2.91 -0.01 6.48 16 Total: -1.00 -60.88 368.57 -3.91 -64.79 By element: Atomic # 1 Polarization: 48.30 SS G_CDS: -0.63 Total: 47.67 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 5.76 Total: -17.40 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -11.07 Total: -134.44 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -60.88 -3.91 -64.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161469391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.034 kcal (2) G-P(sol) polarization free energy of solvation -60.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds