Wall clock time and date at job start Tue Mar 31 2020 10:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47210 * 2 1 4 4 H 1.09002 * 109.47204 * 304.99108 * 3 2 1 5 5 F 1.39899 * 109.47499 * 64.99625 * 3 2 1 6 6 C 1.50710 * 109.47175 * 184.99802 * 3 2 1 7 7 O 1.21277 * 119.99626 * 314.99986 * 6 3 2 8 8 N 1.34770 * 119.99789 * 134.99504 * 6 3 2 9 9 C 1.46504 * 119.99809 * 180.02562 * 8 6 3 10 10 C 1.52993 * 109.47334 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.46134 * 299.97056 * 10 9 8 12 12 O 1.42902 * 109.46803 * 60.02672 * 11 10 9 13 13 C 1.42905 * 113.99830 * 179.97438 * 12 11 10 14 14 C 1.53045 * 109.46306 * 179.97438 * 10 9 8 15 15 C 1.53189 * 109.31558 * 178.61512 * 14 10 9 16 16 N 1.46927 * 108.77596 * 54.63264 * 15 14 10 17 17 C 1.36937 * 120.62634 * 126.37089 * 16 15 14 18 18 H 1.07997 * 120.00342 * 332.15811 * 17 16 15 19 19 C 1.38808 * 119.99653 * 151.89331 * 17 16 15 20 20 N 1.31615 * 119.99878 * 343.01147 * 19 17 16 21 21 Si 1.86804 * 120.00113 * 163.02023 * 19 17 16 22 22 H 1.48499 * 109.47394 * 94.07396 * 21 19 17 23 23 H 1.48497 * 109.47180 * 214.07698 * 21 19 17 24 24 H 1.48498 * 109.46774 * 334.07706 * 21 19 17 25 25 C 1.46921 * 118.74117 * 306.64796 * 16 15 14 26 26 C 1.52764 * 109.00826 * 53.30371 * 25 16 15 27 27 H 1.08994 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47496 * 300.00490 * 1 2 3 29 29 H 1.09004 * 109.46814 * 60.00593 * 1 2 3 30 30 H 1.09001 * 109.47260 * 239.99057 * 2 1 3 31 31 H 1.09007 * 109.46585 * 119.99874 * 2 1 3 32 32 H 0.96998 * 120.00733 * 0.02562 * 8 6 3 33 33 H 1.09000 * 109.46785 * 59.99972 * 9 8 6 34 34 H 1.09002 * 109.47221 * 300.00432 * 9 8 6 35 35 H 1.08997 * 109.47481 * 180.02562 * 11 10 9 36 36 H 1.08996 * 109.47594 * 300.03052 * 11 10 9 37 37 H 1.08999 * 109.46907 * 179.97438 * 13 12 11 38 38 H 1.08992 * 109.47199 * 300.00173 * 13 12 11 39 39 H 1.09002 * 109.46827 * 60.00871 * 13 12 11 40 40 H 1.09006 * 109.49266 * 58.66186 * 14 10 9 41 41 H 1.08998 * 109.49738 * 298.56749 * 14 10 9 42 42 H 1.09002 * 109.58362 * 294.84721 * 15 14 10 43 43 H 1.09000 * 109.70426 * 174.49640 * 15 14 10 44 44 H 0.97005 * 120.00167 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.58753 * 173.14526 * 25 16 15 46 46 H 1.09000 * 109.58571 * 293.56740 * 25 16 15 47 47 H 1.09002 * 109.56043 * 185.55481 * 26 25 16 48 48 H 1.08997 * 109.38623 * 65.52180 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 9 1.6699 2.0680 1.1953 6 6 3.5420 1.4442 -0.1238 7 8 4.2064 0.6810 0.5447 8 7 4.1467 2.2939 -0.9774 9 6 5.6068 2.2952 -1.0982 10 6 6.0326 3.3454 -2.1260 11 6 5.4094 3.0124 -3.4831 12 8 3.9852 3.0113 -3.3658 13 6 3.3019 2.7104 -4.5843 14 6 7.5579 3.3471 -2.2515 15 6 7.9784 4.3753 -3.3063 16 7 7.4006 5.6790 -2.9526 17 6 8.1965 6.7878 -2.8415 18 1 9.2353 6.6814 -2.5658 19 6 7.6695 8.0479 -3.0884 20 7 6.5329 8.1696 -3.7408 21 14 8.5736 9.5712 -2.4951 22 1 9.4408 10.0879 -3.5843 23 1 7.5882 10.6133 -2.1104 24 1 9.4107 9.2231 -1.3190 25 6 5.9536 5.7693 -2.7144 26 6 5.5550 4.7265 -1.6717 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.6154 2.9045 -1.5119 33 1 5.9454 1.3111 -1.4220 34 1 6.0511 2.5324 -0.1315 35 1 5.7130 3.7602 -4.2157 36 1 5.7481 2.0283 -3.8068 37 1 2.2259 2.7288 -4.4115 38 1 3.5619 3.4522 -5.3393 39 1 3.5968 1.7200 -4.9312 40 1 7.8992 2.3565 -2.5525 41 1 8.0016 3.6089 -1.2910 42 1 7.6109 4.0661 -4.2848 43 1 9.0654 4.4520 -3.3319 44 1 6.1648 9.0503 -3.9138 45 1 5.7052 6.7650 -2.3471 46 1 5.4176 5.5762 -3.6437 47 1 4.4708 4.7180 -1.5600 48 1 6.0171 4.9752 -0.7163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162414040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:41 Heat of formation + Delta-G solvation = -118.393007 kcal Electronic energy + Delta-G solvation = -28632.408794 eV Core-core repulsion = 24637.304605 eV Total energy + Delta-G solvation = -3995.104189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -47.93699 -40.05436 -38.77998 -36.81136 -34.93472 -34.13906 -33.10944 -30.91333 -30.03054 -28.35608 -27.45863 -26.37105 -25.05842 -24.00933 -22.48417 -22.07959 -20.85062 -20.39096 -18.46757 -17.74239 -16.97763 -16.63061 -16.18121 -15.96173 -15.73888 -15.27772 -14.90470 -14.81440 -14.45509 -14.31756 -13.95572 -13.75869 -13.52114 -13.27961 -13.22784 -13.01110 -12.63595 -12.44757 -12.40830 -12.09989 -11.93375 -11.63406 -11.38370 -11.34836 -11.32862 -11.06478 -10.98175 -10.73280 -10.56496 -10.28606 -10.20359 -9.98910 -9.76938 -9.55437 -9.46711 -9.41067 -8.88045 -8.47500 -6.69442 -5.82263 -3.24434 2.50193 3.06321 3.35422 3.43298 3.45792 3.81554 4.28641 4.47321 4.48177 4.66300 4.69307 4.95005 5.05419 5.11325 5.21398 5.26090 5.34398 5.37643 5.41313 5.45610 5.48228 5.58906 5.64893 5.67377 5.69994 5.82628 5.85429 5.88957 5.94673 5.99375 6.09423 6.23372 6.36349 6.56498 6.58651 6.61662 6.67660 6.77936 6.86518 7.22131 7.34096 7.63648 7.65984 7.77378 8.24205 8.41890 9.18320 9.81506 10.37572 11.26199 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.019156 B = 0.003362 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.362469 B = 8325.921747 C = 8492.013405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.139 4.139 3 C 0.083 3.917 4 H 0.099 0.901 5 F -0.192 7.192 6 C 0.485 3.515 7 O -0.538 6.538 8 N -0.698 5.698 9 C 0.131 3.869 10 C -0.058 4.058 11 C 0.071 3.929 12 O -0.396 6.396 13 C 0.035 3.965 14 C -0.121 4.121 15 C 0.144 3.856 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.173 3.827 26 C -0.127 4.127 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.414 0.586 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.017 0.983 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.020 0.980 47 H 0.054 0.946 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.165 -14.588 0.949 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C 0.043 3.957 4 H 0.117 0.883 5 F -0.173 7.173 6 C 0.268 3.732 7 O -0.415 6.415 8 N -0.355 5.355 9 C 0.007 3.993 10 C -0.059 4.059 11 C -0.005 4.005 12 O -0.315 6.315 13 C -0.062 4.062 14 C -0.160 4.160 15 C 0.018 3.982 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.047 3.953 26 C -0.166 4.166 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.257 0.743 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.038 0.962 47 H 0.073 0.927 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.861 -14.876 1.545 17.914 hybrid contribution 0.268 1.107 -0.275 1.172 sum -9.593 -13.769 1.270 16.829 Atomic orbital electron populations 1.21777 0.94301 1.02445 1.02537 1.21962 0.97077 0.93815 1.04863 1.21621 0.92623 0.95956 0.85472 0.88325 1.92871 1.92104 1.83952 1.48368 1.20900 0.90167 0.81385 0.80733 1.90696 1.66137 1.40077 1.44608 1.46408 1.08660 1.38761 1.41645 1.21490 0.79560 0.98797 0.99461 1.20795 0.96327 0.96046 0.92703 1.22776 0.79517 0.99902 0.98349 1.87447 1.19482 1.92006 1.32601 1.22684 0.97140 0.99025 0.87344 1.22002 0.92314 0.99530 1.02195 1.20921 0.97265 0.86490 0.93550 1.44044 1.03851 1.03640 1.79883 1.19166 0.94297 0.84592 1.40231 0.91741 1.25027 0.97872 0.98080 0.98540 1.70028 1.21047 1.22449 1.41068 0.86314 0.78898 0.83055 0.78698 1.21502 1.21559 1.20420 1.20679 0.83578 0.97364 0.93639 1.22128 0.99200 0.94108 1.01158 0.91863 0.91946 0.92307 0.89916 0.89591 0.74306 0.91977 0.91447 0.91050 0.93999 0.90049 0.93691 0.94550 0.92633 0.91171 0.96478 0.92532 0.93680 0.89616 0.96198 0.92729 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.83 37.16 0.37 -0.78 16 2 C -0.14 -1.33 5.41 -26.73 -0.14 -1.47 16 3 C 0.08 0.94 3.77 -27.88 -0.11 0.84 16 4 H 0.10 0.87 8.00 -51.93 -0.42 0.45 16 5 F -0.19 -2.59 16.75 2.25 0.04 -2.55 16 6 C 0.49 6.99 7.17 -10.98 -0.08 6.91 16 7 O -0.54 -9.55 16.61 5.56 0.09 -9.45 16 8 N -0.70 -9.66 4.61 -60.29 -0.28 -9.94 16 9 C 0.13 1.91 4.56 -4.04 -0.02 1.89 16 10 C -0.06 -0.89 0.51 -154.47 -0.08 -0.97 16 11 C 0.07 1.02 4.04 37.16 0.15 1.17 16 12 O -0.40 -5.18 6.77 -35.23 -0.24 -5.42 16 13 C 0.03 0.36 11.01 101.05 1.11 1.47 16 14 C -0.12 -1.92 4.91 -26.61 -0.13 -2.05 16 15 C 0.14 2.79 6.05 -3.71 -0.02 2.77 16 16 N -0.59 -14.01 3.00 -172.59 -0.52 -14.53 16 17 C -0.25 -6.73 9.58 -15.06 -0.14 -6.88 16 18 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 19 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 20 N -0.90 -25.44 11.22 55.49 0.62 -24.82 16 21 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.17 3.89 4.81 -3.93 -0.02 3.87 16 26 C -0.13 -2.30 4.57 -26.83 -0.12 -2.42 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.50 7.94 -51.93 -0.41 0.09 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.93 8.05 -51.92 -0.42 0.51 16 32 H 0.41 5.45 4.58 -40.82 -0.19 5.27 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.20 4.99 -51.93 -0.26 0.94 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.02 0.33 6.69 -51.93 -0.35 -0.02 16 43 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 44 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 45 H 0.09 2.23 6.08 -51.93 -0.32 1.91 16 46 H 0.02 0.47 6.70 -51.93 -0.35 0.12 16 47 H 0.05 0.93 6.49 -51.93 -0.34 0.59 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -30.56 372.33 -7.10 -37.66 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.07 Total: 2.77 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 0.68 Total: 4.35 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.17 Total: -49.28 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.15 Total: -14.88 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.56 -7.10 -37.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162414040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.737 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds