Wall clock time and date at job start Tue Mar 31 2020 10:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47210 * 2 1 4 4 H 1.09002 * 109.47204 * 304.99108 * 3 2 1 5 5 F 1.39899 * 109.47499 * 64.99625 * 3 2 1 6 6 C 1.50710 * 109.47175 * 184.99802 * 3 2 1 7 7 O 1.21277 * 119.99626 * 314.99986 * 6 3 2 8 8 N 1.34770 * 119.99789 * 134.99504 * 6 3 2 9 9 C 1.46504 * 119.99809 * 180.02562 * 8 6 3 10 10 C 1.52993 * 109.47334 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.46134 * 299.97056 * 10 9 8 12 12 O 1.42902 * 109.46803 * 60.02672 * 11 10 9 13 13 C 1.42905 * 113.99830 * 179.97438 * 12 11 10 14 14 C 1.53045 * 109.46306 * 179.97438 * 10 9 8 15 15 C 1.53189 * 109.31558 * 178.61512 * 14 10 9 16 16 N 1.46927 * 108.77596 * 54.63264 * 15 14 10 17 17 C 1.36937 * 120.62634 * 126.37089 * 16 15 14 18 18 H 1.07997 * 120.00342 * 332.15811 * 17 16 15 19 19 C 1.38808 * 119.99653 * 151.89331 * 17 16 15 20 20 N 1.31615 * 119.99878 * 343.01147 * 19 17 16 21 21 Si 1.86804 * 120.00113 * 163.02023 * 19 17 16 22 22 H 1.48499 * 109.47394 * 94.07396 * 21 19 17 23 23 H 1.48497 * 109.47180 * 214.07698 * 21 19 17 24 24 H 1.48498 * 109.46774 * 334.07706 * 21 19 17 25 25 C 1.46921 * 118.74117 * 306.64796 * 16 15 14 26 26 C 1.52764 * 109.00826 * 53.30371 * 25 16 15 27 27 H 1.08994 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47496 * 300.00490 * 1 2 3 29 29 H 1.09004 * 109.46814 * 60.00593 * 1 2 3 30 30 H 1.09001 * 109.47260 * 239.99057 * 2 1 3 31 31 H 1.09007 * 109.46585 * 119.99874 * 2 1 3 32 32 H 0.96998 * 120.00733 * 0.02562 * 8 6 3 33 33 H 1.09000 * 109.46785 * 59.99972 * 9 8 6 34 34 H 1.09002 * 109.47221 * 300.00432 * 9 8 6 35 35 H 1.08997 * 109.47481 * 180.02562 * 11 10 9 36 36 H 1.08996 * 109.47594 * 300.03052 * 11 10 9 37 37 H 1.08999 * 109.46907 * 179.97438 * 13 12 11 38 38 H 1.08992 * 109.47199 * 300.00173 * 13 12 11 39 39 H 1.09002 * 109.46827 * 60.00871 * 13 12 11 40 40 H 1.09006 * 109.49266 * 58.66186 * 14 10 9 41 41 H 1.08998 * 109.49738 * 298.56749 * 14 10 9 42 42 H 1.09002 * 109.58362 * 294.84721 * 15 14 10 43 43 H 1.09000 * 109.70426 * 174.49640 * 15 14 10 44 44 H 0.97005 * 120.00167 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.58753 * 173.14526 * 25 16 15 46 46 H 1.09000 * 109.58571 * 293.56740 * 25 16 15 47 47 H 1.09002 * 109.56043 * 185.55481 * 26 25 16 48 48 H 1.08997 * 109.38623 * 65.52180 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 9 1.6699 2.0680 1.1953 6 6 3.5420 1.4442 -0.1238 7 8 4.2064 0.6810 0.5447 8 7 4.1467 2.2939 -0.9774 9 6 5.6068 2.2952 -1.0982 10 6 6.0326 3.3454 -2.1260 11 6 5.4094 3.0124 -3.4831 12 8 3.9852 3.0113 -3.3658 13 6 3.3019 2.7104 -4.5843 14 6 7.5579 3.3471 -2.2515 15 6 7.9784 4.3753 -3.3063 16 7 7.4006 5.6790 -2.9526 17 6 8.1965 6.7878 -2.8415 18 1 9.2353 6.6814 -2.5658 19 6 7.6695 8.0479 -3.0884 20 7 6.5329 8.1696 -3.7408 21 14 8.5736 9.5712 -2.4951 22 1 9.4408 10.0879 -3.5843 23 1 7.5882 10.6133 -2.1104 24 1 9.4107 9.2231 -1.3190 25 6 5.9536 5.7693 -2.7144 26 6 5.5550 4.7265 -1.6717 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.6154 2.9045 -1.5119 33 1 5.9454 1.3111 -1.4220 34 1 6.0511 2.5324 -0.1315 35 1 5.7130 3.7602 -4.2157 36 1 5.7481 2.0283 -3.8068 37 1 2.2259 2.7288 -4.4115 38 1 3.5619 3.4522 -5.3393 39 1 3.5968 1.7200 -4.9312 40 1 7.8992 2.3565 -2.5525 41 1 8.0016 3.6089 -1.2910 42 1 7.6109 4.0661 -4.2848 43 1 9.0654 4.4520 -3.3319 44 1 6.1648 9.0503 -3.9138 45 1 5.7052 6.7650 -2.3471 46 1 5.4176 5.5762 -3.6437 47 1 4.4708 4.7180 -1.5600 48 1 6.0171 4.9752 -0.7163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162414040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:40 Heat of formation + Delta-G solvation = -137.094661 kcal Electronic energy + Delta-G solvation = -28633.219759 eV Core-core repulsion = 24637.304605 eV Total energy + Delta-G solvation = -3995.915153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.91466 -41.29779 -40.02836 -38.04316 -36.34442 -34.93106 -34.65095 -32.62840 -31.65019 -29.45759 -28.57361 -27.62764 -26.09503 -25.66844 -23.94074 -23.13346 -22.31492 -21.48874 -19.90615 -18.96783 -18.34914 -17.89326 -17.23305 -17.05917 -16.85878 -16.73704 -16.27830 -15.98903 -15.78290 -15.36487 -15.34492 -15.19541 -14.77324 -14.71215 -14.40511 -14.04385 -13.92342 -13.80739 -13.39698 -13.24525 -13.14774 -12.97527 -12.84301 -12.60695 -12.55272 -12.37655 -12.21435 -12.00401 -11.97545 -11.83504 -11.80727 -11.46245 -11.27195 -11.10773 -10.78546 -10.55564 -10.44028 -10.05139 -8.63284 -7.86357 -5.30191 1.38432 1.45390 1.48195 1.57087 2.00448 2.51658 2.80430 3.28643 3.45877 3.60940 3.67654 3.72058 3.74759 3.87716 3.95261 3.98329 4.28247 4.42735 4.45319 4.49768 4.53852 4.54091 4.64880 4.65160 4.69110 4.72634 4.77718 4.79335 4.92401 4.93442 5.05021 5.05986 5.15180 5.16899 5.22265 5.25256 5.36157 5.38338 5.44835 5.54504 5.66860 5.80628 6.22489 6.41047 6.55116 7.14221 7.17567 7.89508 8.39690 9.19537 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.019156 B = 0.003362 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.362469 B = 8325.921747 C = 8492.013405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.082 3.918 4 H 0.131 0.869 5 F -0.205 7.205 6 C 0.483 3.517 7 O -0.575 6.575 8 N -0.692 5.692 9 C 0.138 3.862 10 C -0.050 4.050 11 C 0.079 3.921 12 O -0.404 6.404 13 C 0.030 3.970 14 C -0.112 4.112 15 C 0.141 3.859 16 N -0.610 5.610 17 C -0.261 4.261 18 H 0.064 0.936 19 C -0.048 4.048 20 N -0.931 5.931 21 Si 0.961 3.039 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.185 3.815 26 C -0.113 4.113 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.419 0.581 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.032 0.968 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.023 0.977 43 H 0.054 0.946 44 H 0.248 0.752 45 H 0.045 0.955 46 H 0.005 0.995 47 H 0.066 0.934 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 -16.357 0.711 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.043 3.957 4 H 0.148 0.852 5 F -0.186 7.186 6 C 0.267 3.733 7 O -0.455 6.455 8 N -0.349 5.349 9 C 0.014 3.986 10 C -0.050 4.050 11 C 0.003 3.997 12 O -0.323 6.323 13 C -0.066 4.066 14 C -0.151 4.151 15 C 0.016 3.984 16 N -0.333 5.333 17 C -0.392 4.392 18 H 0.082 0.918 19 C -0.244 4.244 20 N -0.577 5.577 21 Si 0.789 3.211 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.060 3.940 26 C -0.152 4.152 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.262 0.738 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.023 0.977 47 H 0.084 0.916 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.613 -16.662 1.299 19.798 hybrid contribution 0.506 1.624 -0.253 1.720 sum -10.107 -15.038 1.046 18.149 Atomic orbital electron populations 1.21769 0.92556 1.03450 1.02896 1.21972 0.98490 0.92392 1.04571 1.21855 0.90465 0.97576 0.85822 0.85174 1.92845 1.91996 1.84327 1.49473 1.21456 0.91457 0.80524 0.79858 1.90679 1.67298 1.41561 1.45949 1.46394 1.08360 1.38586 1.41525 1.21330 0.80149 0.98743 0.98366 1.20664 0.96140 0.94411 0.93816 1.22569 0.80523 1.00133 0.96505 1.87412 1.18609 1.92238 1.34082 1.22888 0.98261 0.99442 0.86046 1.21883 0.92605 1.00052 1.00561 1.21077 0.97058 0.85374 0.94935 1.44290 1.04093 1.04575 1.80382 1.19477 0.94630 0.85842 1.39213 0.91811 1.25712 0.98859 1.00588 0.99230 1.70167 1.22481 1.22482 1.42557 0.85368 0.77679 0.79778 0.78251 1.21279 1.22018 1.19754 1.20401 0.83197 0.96538 0.93880 1.21899 0.99785 0.94665 0.98856 0.90592 0.92748 0.90773 0.88732 0.91422 0.73762 0.90776 0.92646 0.93782 0.91733 0.87590 0.94898 0.92933 0.89081 0.91915 0.95948 0.92702 0.94240 0.93683 0.97709 0.91599 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.83 71.98 0.71 -1.13 16 2 C -0.14 -2.31 5.41 30.59 0.17 -2.14 16 3 C 0.08 1.68 3.77 29.85 0.11 1.79 16 4 H 0.13 1.85 8.00 -2.39 -0.02 1.83 16 5 F -0.21 -5.25 16.75 44.97 0.75 -4.50 16 6 C 0.48 13.07 7.17 87.66 0.63 13.69 16 7 O -0.57 -19.81 16.61 -3.02 -0.05 -19.86 16 8 N -0.69 -17.70 4.61 -463.06 -2.13 -19.83 16 9 C 0.14 3.76 4.56 86.38 0.39 4.15 16 10 C -0.05 -1.45 0.51 -52.16 -0.03 -1.48 16 11 C 0.08 2.11 4.04 71.98 0.29 2.41 16 12 O -0.40 -9.62 6.77 -148.98 -1.01 -10.63 16 13 C 0.03 0.53 11.01 113.37 1.25 1.78 16 14 C -0.11 -3.35 4.91 30.67 0.15 -3.20 16 15 C 0.14 5.36 6.05 86.36 0.52 5.88 16 16 N -0.61 -29.31 3.00 -699.94 -2.10 -31.41 16 17 C -0.26 -14.11 9.58 84.03 0.80 -13.30 16 18 H 0.06 3.38 7.89 -2.91 -0.02 3.35 16 19 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 20 N -0.93 -54.11 11.22 21.65 0.24 -53.86 16 21 Si 0.96 44.67 29.59 68.60 2.03 46.70 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 C 0.19 8.55 4.81 86.22 0.41 8.96 16 26 C -0.11 -4.08 4.57 30.53 0.14 -3.94 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.76 7.94 -2.39 -0.02 0.74 16 29 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.40 8.05 -2.38 -0.02 1.38 16 32 H 0.42 10.01 4.58 -92.71 -0.42 9.59 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.44 4.99 -2.39 -0.01 1.43 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 2.13 8.14 -2.38 -0.02 2.12 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.02 0.84 6.69 -2.39 -0.02 0.83 16 43 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 44 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 45 H 0.04 2.43 6.08 -2.39 -0.01 2.42 16 46 H 0.00 0.24 6.70 -2.39 -0.02 0.22 16 47 H 0.07 2.20 6.49 -2.39 -0.02 2.19 16 48 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -67.79 372.33 4.23 -63.56 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.52 Total: 18.60 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.97 Total: 11.23 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -3.99 Total: -105.11 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.06 Total: -30.49 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.75 Total: -4.50 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -67.79 4.23 -63.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162414040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.531 kcal (2) G-P(sol) polarization free energy of solvation -67.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds